Rh2BG582500

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000351
Physical Location & Seq
Forward (+)
79862664 .. 79863861
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG582500.1

Sequence Viewer

Length: 948 bp
ATGAGTAGTCACCAGTTTGTAGAAATGATGGTGGTTGATGGTTGCCTTGTTATTGAGTTCATGCTCGGAAGGACATACAGCAAGATTCTTCGGAATGATCCTCTGTCCCAAAGTTCATGGATGCGCACCCCACTTATATCAGATTTGTTTCTACGGGAAAACCAGTTGCCTTGGTTAGTTCTTGATTGTTTATTCCAATATCTTGTAAAAGAAAATGCTGACGATGAACCTGTTGGAAAGCATAAGTTTCTGTCTGAGCTTACTCTCAAATTTTGTCAGTTGCACACCATGCGTTTTCTAAAGCCAATTGATGGAGCATCCGAAATCAGGCATTTACTTGACCACATAAGAATTGGTATAGTTGGACCAGAAAAGCTAACCTTCAGTTCACGTCGTTATTTGGTTCCCTCTGTGACAGAACTCCGGCAAATTGGAGTCATATTTAAACGTGGAGACATGTCTGCTTGCCACACACTCAACATAGCCTTCCACAATGGAGTGATGGAGATTCCGGAAATATGTATTGGCAATAATCGATCTCTCTTTATCAACCTCATTGCCCTCGAAGAATGCCAACAAGGCCTCATAGGTTATGCATTTACCTCTTATGCCAGGGTCTTGCATTATATTATTAAATCTAACAAAGATGCAGAATTTCTCATGCAGAAAGGAATTATACATACCACTTTGAGCAAGGAGGACATAACTTGTCTCTTCAATAGCATTCATGATAACGCAACACCGACCTCTGAATCTGTTGTAATTCTCACCAGGAATGTGCATTTGTATTGTAAGCGTCGTTGGCTCAGGAGATGCCTTATAAGTATCAAACAGGATTATCTATACAATCCATCTTCAGTCTGGTCCCTTTCTAATGCGGTCATCATTATTGTAATTCTCGGCATCGCACAAACCATATACACTCTTCTCTCTTACTACAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

315

Amino Acids

36.25

Weight (kDa)

8.51

Isoelectric Point (pI)

55.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 3 - 298 1.3e-58 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 821
Acc16I TGCGCA 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 311
AccIII TCCGGA 1 cut(s) 511
AciI CCGC 1 cut(s) 878
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 2 cut(s) 269, 653
AcuI CTGAAG 2 cut(s) 367, 840
AfiI CCNNNNNNNGG 2 cut(s) 311, 327
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 1 cut(s) 718
AjiI CACGTC 1 cut(s) 392
AjnI CCWGG 2 cut(s) 611, 770
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AluBI AGCT 2 cut(s) 259, 376
AluI AGCT 2 cut(s) 259, 376
Alw26I GTCTC 2 cut(s) 447, 716
AlwI GGATC 1 cut(s) 92
Aor13HI TCCGGA 1 cut(s) 511
AoxI GGCC 1 cut(s) 580
ApoI RAATTY 2 cut(s) 269, 653
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 365, 864
AsuHPI GGTGA 1 cut(s) 760
AvaII GGWCC 2 cut(s) 365, 864
BccI CCATC 5 cut(s) 22, 32, 305, 496, 859
BciT130I CCWGG 2 cut(s) 613, 772
BcoDI GTCTC 2 cut(s) 447, 716
BglI GCCNNNNNGGC 1 cut(s) 579
Bme1390I CCNGG 2 cut(s) 613, 772
Bme18I GGWCC 2 cut(s) 365, 864
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 365, 864
BmiI GGNNCC 2 cut(s) 405, 866
BmrFI CCNGG 2 cut(s) 613, 772
BmsI GCATC 5 cut(s) 111, 326, 637, 803, 912
Bpu10I CCTNAGC 1 cut(s) 806
Bsa29I ATCGAT 1 cut(s) 535
BsaJI CCNNGG 2 cut(s) 170, 612
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 327
Bse1I ACTGG 2 cut(s) 13, 163
Bse3DI GCAATG 1 cut(s) 555
BseAI TCCGGA 1 cut(s) 511
BseBI CCWGG 2 cut(s) 613, 772
BseCI ATCGAT 1 cut(s) 535
BseDI CCNNGG 2 cut(s) 170, 612
BseGI GGATG 2 cut(s) 126, 317
BseLI CCNNNNNNNGG 2 cut(s) 311, 327
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 2 cut(s) 246, 820
BseNI ACTGG 2 cut(s) 13, 163
BshFI GGCC 1 cut(s) 582
BshVI ATCGAT 1 cut(s) 535
BsiSI CCGG 2 cut(s) 424, 512
BslFI GGGAC 2 cut(s) 91, 850
BslI CCNNNNNNNGG 2 cut(s) 311, 327
BsmAI GTCTC 2 cut(s) 447, 716
BsmFI GGGAC 2 cut(s) 91, 850
BsmI GAATGC 2 cut(s) 575, 723
BsnI GGCC 1 cut(s) 582
Bsp13I TCCGGA 1 cut(s) 511
Bsp143I GATC 2 cut(s) 97, 536
BspACI CCGC 1 cut(s) 878
BspANI GGCC 1 cut(s) 582
BspCNI CTCAG 2 cut(s) 247, 819
BspDI ATCGAT 1 cut(s) 535
BspEI TCCGGA 1 cut(s) 511
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 2 cut(s) 405, 866
BspPI GGATC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 555
BsrI ACTGG 2 cut(s) 13, 163
BssECI CCNNGG 2 cut(s) 170, 612
BssMI GATC 2 cut(s) 97, 536
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 2 cut(s) 613, 772
Bst6I CTCTTC 2 cut(s) 719, 930
BstAPI GCANNNNNTGC 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 2 cut(s) 255, 806
BstF5I GGATG 2 cut(s) 126, 317
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 100, 539
BstMAI GTCTC 2 cut(s) 447, 716
BstMBI GATC 2 cut(s) 97, 536
BstMWI GCNNNNNNNGC 3 cut(s) 289, 579, 802
BstNI CCWGG 2 cut(s) 613, 772
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 2 cut(s) 611, 770
Bsu15I ATCGAT 1 cut(s) 535
BsuRI GGCC 1 cut(s) 582
BsuTUI ATCGAT 1 cut(s) 535
BtgZI GCGATG 1 cut(s) 889
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 2 cut(s) 126, 317
Cac8I GCNNGC 1 cut(s) 466
CciI TCATGA 1 cut(s) 727
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 365, 864
ClaI ATCGAT 1 cut(s) 535
CseI GACGC 1 cut(s) 785
CviAII CATG 6 cut(s) 61, 117, 289, 457, 661, 728
CviJI RGCY 6 cut(s) 259, 304, 376, 485, 582, 805
CviKI_1 RGCY 6 cut(s) 259, 304, 376, 485, 582, 805
DdeI CTNAG 2 cut(s) 255, 806
DpnI GATC 2 cut(s) 99, 538
DpnII GATC 2 cut(s) 97, 536
DraI TTTAAA 1 cut(s) 445
Eam1104I CTCTTC 2 cut(s) 719, 930
EarI CTCTTC 2 cut(s) 719, 930
Eco130I CCWWGG 1 cut(s) 170
Eco147I AGGCCT 1 cut(s) 582
Eco47I GGWCC 2 cut(s) 365, 864
Eco57I CTGAAG 2 cut(s) 367, 840
EcoRII CCWGG 2 cut(s) 611, 770
EcoT14I CCWWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 6 cut(s) 64, 120, 292, 460, 664, 731
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FaqI GGGAC 2 cut(s) 91, 850
FatI CATG 6 cut(s) 60, 116, 288, 456, 660, 727
FokI GGATG 2 cut(s) 133, 304
FspAI RTGCGCAY 1 cut(s) 125
FspI TGCGCA 1 cut(s) 125
GlaI GCGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 582
HapII CCGG 2 cut(s) 424, 512
HgaI GACGC 1 cut(s) 785
HhaI GCGC 1 cut(s) 126
Hin1II CATG 6 cut(s) 64, 120, 292, 460, 664, 731
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 4 cut(s) 85, 435, 508, 752
HpaII CCGG 2 cut(s) 424, 512
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 6 cut(s) 68, 93, 142, 256, 322, 751
Hpy188III TCNNGA 4 cut(s) 182, 512, 728, 808
Hpy8I GTNNAC 1 cut(s) 389
Hpy99I CGWCG 2 cut(s) 396, 801
HpyAV CCTTC 3 cut(s) 63, 391, 496
HpyCH4IV ACGT 2 cut(s) 391, 448
HpyCH4V TGCA 6 cut(s) 283, 596, 622, 650, 664, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 289, 579, 802
HpyF3I CTNAG 2 cut(s) 255, 806
HpySE526I ACGT 2 cut(s) 391, 448
Hsp92II CATG 6 cut(s) 64, 120, 292, 460, 664, 731
HspAI GCGC 1 cut(s) 124
Kpn2I TCCGGA 1 cut(s) 511
Kzo9I GATC 2 cut(s) 97, 536
LmnI GCTCC 1 cut(s) 314
LweI GCATC 5 cut(s) 111, 326, 637, 803, 912
MaeII ACGT 2 cut(s) 391, 448
MaeIII GTNAC 2 cut(s) 8, 412
MalI GATC 2 cut(s) 99, 538
MboI GATC 2 cut(s) 97, 536
MboII GAAGA 5 cut(s) 80, 578, 706, 846, 917
MfeI CAATTG 1 cut(s) 306
MluCI AATT 8 cut(s) 269, 306, 351, 429, 653, 672, 762, 894
MlyI GAGTC 1 cut(s) 444
MmeI TCCRAC 2 cut(s) 214, 343
MnlI CCTC 8 cut(s) 111, 418, 563, 572, 593, 613, 691, 757
Mph1103I ATGCAT 1 cut(s) 598
MroI TCCGGA 1 cut(s) 511
MseI TTAA 2 cut(s) 444, 633
MspI CCGG 2 cut(s) 424, 512
MspR9I CCNGG 2 cut(s) 613, 772
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 2 cut(s) 575, 723
MvaI CCWGG 2 cut(s) 613, 772
MwoI GCNNNNNNNGC 3 cut(s) 289, 579, 802
NdeII GATC 2 cut(s) 97, 536
NlaIII CATG 6 cut(s) 64, 120, 292, 460, 664, 731
NlaIV GGNNCC 2 cut(s) 405, 866
NmeAIII GCCGAG 1 cut(s) 879
NmuCI GTSAC 2 cut(s) 8, 412
NsbI TGCGCA 1 cut(s) 125
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 1 cut(s) 460
PagI TCATGA 1 cut(s) 727
PceI AGGCCT 1 cut(s) 582
PciI ACATGT 1 cut(s) 456
PctI GAATGC 2 cut(s) 575, 723
PfeI GAWTC 3 cut(s) 85, 508, 752
PflMI CCANNNNNTGG 1 cut(s) 311
PleI GAGTC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 443
PscI ACATGT 1 cut(s) 456
PsiI TTATAA 1 cut(s) 821
Psp6I CCWGG 2 cut(s) 611, 770
PspGI CCWGG 2 cut(s) 611, 770
PspN4I GGNNCC 2 cut(s) 405, 866
PspPI GGNCC 2 cut(s) 365, 864
SaqAI TTAA 2 cut(s) 444, 633
Sau3AI GATC 2 cut(s) 97, 536
Sau96I GGNCC 2 cut(s) 365, 864
SchI GAGTC 1 cut(s) 444
ScrFI CCNGG 2 cut(s) 613, 772
SfaNI GCATC 5 cut(s) 111, 326, 637, 803, 912
SinI GGWCC 2 cut(s) 365, 864
Sse9I AATT 8 cut(s) 269, 306, 351, 429, 653, 672, 762, 894
SseBI AGGCCT 1 cut(s) 582
SsiI CCGC 1 cut(s) 878
StuI AGGCCT 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 611, 770
StyI CCWWGG 1 cut(s) 170
TaiI ACGT 2 cut(s) 394, 451
TaqI TCGA 2 cut(s) 535, 564
TasI AATT 8 cut(s) 269, 306, 351, 429, 653, 672, 762, 894
TfiI GAWTC 3 cut(s) 85, 508, 752
Tru1I TTAA 2 cut(s) 444, 633
Tru9I TTAA 2 cut(s) 444, 633
TseFI GTSAC 2 cut(s) 8, 412
Tsp45I GTSAC 2 cut(s) 8, 412
TspDTI ATGAA 4 cut(s) 49, 105, 240, 716
Van91I CCANNNNNTGG 1 cut(s) 311
VpaK11BI GGWCC 2 cut(s) 365, 864
XapI RAATTY 2 cut(s) 269, 653
XceI RCATGY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 2 cut(s) 350, 858
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.