MD15G1081900.v1.1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000351
Physical Location & Seq
Reverse (-)
5621395 .. 5623044
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1081900.v1.1.491

Sequence Viewer

Length: 1287 bp
ATGGAAGCAAATAATGTGAGAAATAAAAATTTAGCGTCCTCGATTCAAGGAAAACTTCAGCAGCAGTCCCCGTTACGCAGTCATCATTCCATATTTAGAGTCCCTAATGTGCTACGTAATGATAACGAAAGAGTTTATGTTCCACGTTTGATCTCAATTGGACCATTGCACCGTGGATCGAAATTGCAAACCATGGAAGGAATTAAATTGTGGTATTTGCATTGCCTGCTTCAGCGAGATCAGACTCGAAAAACTGGTTTAGAGCACTTTGTCGAAGCTATTAGAGATATAGAACAAGATTGTCGGGATAGCTATGAAGAACAAATTGATATGAGCAGTGATGATTTTGTAGAAATGCTGGTGGTTGATGGATGCTTCATTATCGAACTCTTCAGGAAGTCTTCAGGAGAGGTGCCAACAAAGGAGGAAGATCCTGTGTTCCACAAGTCATGGATACACACGCCACTTATAAATGACTTGCTTCTTCTTGAAAACCAGCTTCCTTGGATAGTTCTTGACCGTTTATTTGATCTCACGCTGGAAACCAGTGCAGGTAACAATAACCATATTTCACTTCCTGAGATTACTCTACGATATTTTGAGGTGTATAGCTTGGGGATGCTTTCACGGACCTATCGAGCATCGGGAAGCAAACATTTACTCGACTTCATAAGAAACTCTTTGATCGGATGGTATCAATCAGATGATGCGCATATGCCCTTAAGTCTGTTCAAGATTCCCTCTGCGACGGAGCTTGCAGGATCAGGAATCATTCTTACTACGGGTCGAAAATATGATGGCATGCTCAACATAACCTTCGAAGACGGAGTGTTGCGAATTCCACCAATAAGGGTTTGTAAGAACGGAGAATCGCTGTTTAGAAATCTCGTCGCTTATGAACAGTGTGAAACAACAACCGGTGTGAGTAAATATGCCTCTTATGCTGTGTTGTTGGATCACCTCATTAAGTCCAAGGAAGATGTAGAGCTTCTTGTCAAGAGGGGAGTTATAGAAAATTTTGGCGATGACATGGCCTGGCTCTTGAATAATCTTTCCAATGGTATCATCGTTTACAATTTTACTTACCGAAGAATCTACGAGAATCTGAATACATTTTGTGGGACACGCTGGGACAGGTGGCATGCTTACGTGCGTGCTGCGTTTCGAATTTATTTCAGAAATCCCTTTGAATTGATGAATTTTACTAATGCTGTCTTCATTGTTACACTTTTGACATTGATACAAACAACGTATTCCGTTGCGTCATACTACAAGCCGCAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

429

Amino Acids

49.56

Weight (kDa)

6.33

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 31 - 409 1.1e-100 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 470
Acc16I TGCGCA 1 cut(s) 711
Acc36I ACCTGC 1 cut(s) 542
AccB1I GGYRCC 1 cut(s) 412
AciI CCGC 1 cut(s) 1277
AclWI GGATC 4 cut(s) 184, 425, 769, 963
AcsI RAATTY 5 cut(s) 28, 837, 1015, 1167, 1198
AcuI CTGAAG 4 cut(s) 41, 215, 376, 387
AflII CTTAAG 1 cut(s) 721
AgeI ACCGGT 1 cut(s) 917
AgsI TTSAA 5 cut(s) 47, 491, 733, 1045, 1190
AjnI CCWGG 1 cut(s) 1034
AluBI AGCT 6 cut(s) 278, 312, 499, 612, 754, 988
AluI AGCT 6 cut(s) 278, 312, 499, 612, 754, 988
Alw21I GWGCWC 1 cut(s) 267
AlwI GGATC 4 cut(s) 184, 425, 769, 963
AoxI GGCC 1 cut(s) 1032
ApeKI GCWGC 3 cut(s) 61, 1157, 1279
ApoI RAATTY 5 cut(s) 28, 837, 1015, 1167, 1198
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
AsiGI ACCGGT 1 cut(s) 917
AspLEI GCGC 1 cut(s) 712
AspS9I GGNCC 2 cut(s) 161, 630
AsuHPI GGTGA 1 cut(s) 950
AsuII TTCGAA 2 cut(s) 819, 1165
AvaII GGWCC 2 cut(s) 161, 630
BanI GGYRCC 1 cut(s) 412
BbsI GAAGAC 3 cut(s) 393, 828, 1207
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 73, 1144
BccI CCATC 3 cut(s) 362, 684, 791
BciT130I CCWGG 1 cut(s) 1036
BciVI GTATCC 1 cut(s) 447
BfrI CTTAAG 1 cut(s) 721
BfuAI ACCTGC 1 cut(s) 542
BfuI GTATCC 1 cut(s) 447
BisI GCNGC 4 cut(s) 62, 1158, 1277, 1280
BlsI GCNGC 4 cut(s) 63, 1159, 1278, 1281
Bme1390I CCNGG 1 cut(s) 1036
Bme18I GGWCC 2 cut(s) 161, 630
BmgT120I GGNCC 2 cut(s) 161, 630
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 1036
BmsI GCATC 4 cut(s) 362, 609, 650, 697
BpiI GAAGAC 3 cut(s) 393, 828, 1207
Bpu14I TTCGAA 2 cut(s) 819, 1165
BsaAI YACGTR 2 cut(s) 116, 1150
BsaJI CCNNGG 4 cut(s) 172, 192, 503, 972
BsaWI WCCGGW 1 cut(s) 917
Bse118I RCCGGY 1 cut(s) 917
Bse1I ACTGG 2 cut(s) 259, 546
Bse3DI GCAATG 2 cut(s) 164, 220
BseBI CCWGG 1 cut(s) 1036
BseDI CCNNGG 4 cut(s) 172, 192, 503, 972
BseGI GGATG 3 cut(s) 377, 624, 695
BseMI GCAATG 2 cut(s) 164, 220
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 2 cut(s) 259, 546
BseXI GCAGC 2 cut(s) 73, 1144
BseYI CCCAGC 1 cut(s) 1128
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 1 cut(s) 1034
BshNI GGYRCC 1 cut(s) 412
BshTI ACCGGT 1 cut(s) 917
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 918
BslFI GGGAC 4 cut(s) 52, 86, 1135, 1145
BsmFI GGGAC 4 cut(s) 52, 86, 1135, 1145
BsnI GGCC 1 cut(s) 1034
Bsp119I TTCGAA 2 cut(s) 819, 1165
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 8 cut(s) 150, 176, 238, 430, 529, 684, 761, 955
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 1 cut(s) 1277
BspANI GGCC 1 cut(s) 1034
BspCNI CTCAG 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 414
BspMI ACCTGC 1 cut(s) 542
BspPI GGATC 4 cut(s) 184, 425, 769, 963
BspT104I TTCGAA 2 cut(s) 819, 1165
BspT107I GGYRCC 1 cut(s) 412
BspTI CTTAAG 1 cut(s) 721
BsrDI GCAATG 2 cut(s) 164, 220
BsrFI RCCGGY 1 cut(s) 917
BsrI ACTGG 2 cut(s) 259, 546
BssAI RCCGGY 1 cut(s) 917
BssECI CCNNGG 4 cut(s) 172, 192, 503, 972
BssMI GATC 8 cut(s) 150, 176, 238, 430, 529, 684, 761, 955
BssT1I CCWWGG 3 cut(s) 192, 503, 972
Bst2UI CCWGG 1 cut(s) 1036
Bst4CI ACNGT 3 cut(s) 173, 521, 903
Bst6I CTCTTC 1 cut(s) 395
BstAFI CTTAAG 1 cut(s) 721
BstAPI GCANNNNNTGC 1 cut(s) 226
BstBAI YACGTR 2 cut(s) 116, 1150
BstBI TTCGAA 2 cut(s) 819, 1165
BstC8I GCNNGC 5 cut(s) 227, 756, 803, 1143, 1155
BstDEI CTNAG 1 cut(s) 579
BstDSI CCRYGG 2 cut(s) 172, 192
BstF5I GGATG 3 cut(s) 377, 624, 695
BstHHI GCGC 1 cut(s) 712
BstKTI GATC 8 cut(s) 153, 179, 241, 433, 532, 687, 764, 958
BstMBI GATC 8 cut(s) 150, 176, 238, 430, 529, 684, 761, 955
BstMWI GCNNNNNNNGC 2 cut(s) 226, 941
BstNI CCWGG 1 cut(s) 1036
BstNSI RCATGY 2 cut(s) 805, 1145
BstSCI CCNGG 1 cut(s) 1034
BstSNI TACGTA 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 73, 1144
BstV2I GAAGAC 3 cut(s) 393, 828, 1207
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuI GTATCC 1 cut(s) 447
BsuRI GGCC 1 cut(s) 1034
BtgI CCRYGG 2 cut(s) 172, 192
BtgZI GCGATG 1 cut(s) 1038
BtsCI GGATG 3 cut(s) 377, 624, 695
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 3 cut(s) 343, 553, 908
BveI ACCTGC 1 cut(s) 542
Cac8I GCNNGC 5 cut(s) 227, 756, 803, 1143, 1155
CfoI GCGC 1 cut(s) 712
Cfr10I RCCGGY 1 cut(s) 917
Cfr13I GGNCC 2 cut(s) 161, 630
CseI GACGC 2 cut(s) 24, 1251
CspAI ACCGGT 1 cut(s) 917
CviAII CATG 5 cut(s) 193, 450, 802, 1030, 1142
CviJI RGCY 9 cut(s) 278, 312, 499, 612, 754, 988, 1034, 1039, 1276
CviKI_1 RGCY 9 cut(s) 278, 312, 499, 612, 754, 988, 1034, 1039, 1276
DdeI CTNAG 1 cut(s) 579
DpnI GATC 8 cut(s) 152, 178, 240, 432, 531, 686, 763, 957
DpnII GATC 8 cut(s) 150, 176, 238, 430, 529, 684, 761, 955
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Eco105I TACGTA 1 cut(s) 116
Eco130I CCWWGG 3 cut(s) 192, 503, 972
Eco47I GGWCC 2 cut(s) 161, 630
Eco57I CTGAAG 4 cut(s) 41, 215, 376, 387
EcoRI GAATTC 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 1034
EcoT14I CCWWGG 3 cut(s) 192, 503, 972
ErhI CCWWGG 3 cut(s) 192, 503, 972
FaeI CATG 5 cut(s) 196, 453, 805, 1033, 1145
FalI AAGNNNNNCTT 4 cut(s) 39, 71, 664, 696
FaqI GGGAC 4 cut(s) 52, 86, 1135, 1145
FatI CATG 5 cut(s) 192, 449, 801, 1029, 1141
FauNDI CATATG 1 cut(s) 714
Fnu4HI GCNGC 4 cut(s) 62, 1158, 1277, 1280
FokI GGATG 3 cut(s) 384, 631, 702
Fsp4HI GCNGC 4 cut(s) 62, 1158, 1277, 1280
FspAI RTGCGCAY 1 cut(s) 711
FspI TGCGCA 1 cut(s) 711
GlaI GCGC 1 cut(s) 711
GluI GCNGC 4 cut(s) 62, 1158, 1277, 1280
GsaI CCCAGC 1 cut(s) 1132
HaeIII GGCC 1 cut(s) 1034
HapII CCGG 1 cut(s) 918
HgaI GACGC 2 cut(s) 24, 1251
HhaI GCGC 1 cut(s) 712
Hin1II CATG 5 cut(s) 196, 453, 805, 1033, 1145
Hin6I GCGC 1 cut(s) 710
HinP1I GCGC 1 cut(s) 710
HinfI GANTC 8 cut(s) 43, 99, 244, 736, 768, 869, 1092, 1102
HpaII CCGG 1 cut(s) 918
HphI GGTGA 1 cut(s) 950
Hpy166II GTNNAC 1 cut(s) 1072
Hpy188I TCNGA 5 cut(s) 243, 689, 703, 1107, 1178
Hpy8I GTNNAC 1 cut(s) 1072
Hpy99I CGWCG 2 cut(s) 751, 893
HpyAV CCTTC 2 cut(s) 191, 826
HpyCH4III ACNGT 3 cut(s) 173, 521, 903
HpyCH4IV ACGT 4 cut(s) 115, 145, 1149, 1250
HpyCH4V TGCA 5 cut(s) 169, 187, 220, 551, 758
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 941
HpyF3I CTNAG 1 cut(s) 579
HpySE526I ACGT 4 cut(s) 115, 145, 1149, 1250
Hsp92II CATG 5 cut(s) 196, 453, 805, 1033, 1145
HspAI GCGC 1 cut(s) 710
Kzo9I GATC 8 cut(s) 150, 176, 238, 430, 529, 684, 761, 955
LmnI GCTCC 1 cut(s) 751
Lsp1109I GCAGC 2 cut(s) 73, 1144
LweI GCATC 4 cut(s) 362, 609, 650, 697
MaeII ACGT 4 cut(s) 115, 145, 1149, 1250
MaeIII GTNAC 3 cut(s) 72, 554, 1222
MalI GATC 8 cut(s) 152, 178, 240, 432, 531, 686, 763, 957
MboI GATC 8 cut(s) 150, 176, 238, 430, 529, 684, 761, 955
MboII GAAGA 9 cut(s) 329, 382, 393, 440, 476, 833, 989, 1101, 1207
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 267
MlyI GAGTC 2 cut(s) 108, 238
MmeI TCCRAC 1 cut(s) 933
MnlI CCTC 8 cut(s) 49, 403, 418, 595, 751, 946, 971, 993
MseI TTAA 3 cut(s) 204, 722, 966
MspCI CTTAAG 1 cut(s) 721
MspI CCGG 1 cut(s) 918
MspR9I CCNGG 1 cut(s) 1036
MunI CAATTG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 1036
MwoI GCNNNNNNNGC 2 cut(s) 226, 941
NcoI CCATGG 1 cut(s) 192
NdeI CATATG 1 cut(s) 714
NdeII GATC 8 cut(s) 150, 176, 238, 430, 529, 684, 761, 955
NlaIII CATG 5 cut(s) 196, 453, 805, 1033, 1145
NlaIV GGNNCC 1 cut(s) 414
NsbI TGCGCA 1 cut(s) 711
NspI RCATGY 2 cut(s) 805, 1145
NspV TTCGAA 2 cut(s) 819, 1165
PaeI GCATGC 2 cut(s) 805, 1145
PcsI WCGNNNNNNNCGW 1 cut(s) 634
PfeI GAWTC 6 cut(s) 43, 736, 768, 869, 1092, 1102
PinAI ACCGGT 1 cut(s) 917
PkrI GCNGC 4 cut(s) 63, 1159, 1278, 1281
PleI GAGTC 2 cut(s) 107, 238
PpsI GAGTC 2 cut(s) 107, 238
Ppu21I YACGTR 2 cut(s) 116, 1150
PsiI TTATAA 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 1034
PspFI CCCAGC 1 cut(s) 1128
PspGI CCWGG 1 cut(s) 1034
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 2 cut(s) 161, 630
PsuI RGATCY 1 cut(s) 430
SaqAI TTAA 3 cut(s) 204, 722, 966
SatI GCNGC 4 cut(s) 62, 1158, 1277, 1280
Sau3AI GATC 8 cut(s) 150, 176, 238, 430, 529, 684, 761, 955
Sau96I GGNCC 2 cut(s) 161, 630
SchI GAGTC 2 cut(s) 108, 238
ScrFI CCNGG 1 cut(s) 1036
SduI GDGCHC 1 cut(s) 267
SfaNI GCATC 4 cut(s) 362, 609, 650, 697
SfuI TTCGAA 2 cut(s) 819, 1165
SinI GGWCC 2 cut(s) 161, 630
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
SnaBI TACGTA 1 cut(s) 116
SphI GCATGC 2 cut(s) 805, 1145
SsiI CCGC 1 cut(s) 1277
StyD4I CCNGG 1 cut(s) 1034
StyI CCWWGG 3 cut(s) 192, 503, 972
TaaI ACNGT 3 cut(s) 173, 521, 903
TaiI ACGT 4 cut(s) 118, 148, 1152, 1253
TauI GCSGC 1 cut(s) 1279
TfiI GAWTC 6 cut(s) 43, 736, 768, 869, 1092, 1102
Tru1I TTAA 3 cut(s) 204, 722, 966
Tru9I TTAA 3 cut(s) 204, 722, 966
TscAI CASTG 3 cut(s) 343, 553, 908
TseI GCWGC 3 cut(s) 61, 1157, 1279
TspDTI ATGAA 6 cut(s) 330, 367, 658, 912, 1207, 1211
TspGWI ACGGA 5 cut(s) 643, 764, 840, 879, 1246
TspRI CASTG 3 cut(s) 343, 553, 908
Vha464I CTTAAG 1 cut(s) 721
VpaK11BI GGWCC 2 cut(s) 161, 630
XapI RAATTY 5 cut(s) 28, 837, 1015, 1167, 1198
XceI RCATGY 2 cut(s) 805, 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.