RchiOBHm_Chr7g0229231

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000351
Physical Location & Seq
Forward (+)
52677430 .. 52677924
495 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20534

Sequence Viewer

Length: 495 bp
ATGGAAGGAATGAAACTATGGTACTTGCACAACCTTCTTATTCAAAAAGCCACTCCCGAGACCAACATGGAACACATTGTTGAAAAAATTAGAAGTATGGAGGAATATTGTTGTGATTGCTATGATGAAAAAATTGATTTGAGTAGTCAAAAATTTATAGAGATGTTGGTGGTTGCTGGTTTCTTTATTATTGAACTCTTCCGCAAGATGATAGGAGACATGCCCAGAGGCATGGACGATCCTCTGTTCAATAGGTTAGGGATGTTGCCAACAGTACTAAATGATTTGCTTCTACTAGAAAACCAATTGCCTTGGAGAGTTCTTGGCTGCTTATTCCATCAAGTACCTGTTGGAAAATTCAAGTCCTTTTGGGAGCTTACTCAAAGAGTCCTTCCGAGTTGGAGAGGTTTAGAATATTTTGTTTCTCATTTTCCAAATACATTCCAAAGCAAACATTTTGATGGGGAAAAGGTATCGAACAAAGGCCTCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

164

Amino Acids

19.34

Weight (kDa)

5.95

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 118 9e-28 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 2 cut(s) 152, 356
AfaI GTAC 3 cut(s) 23, 276, 345
AgsI TTSAA 5 cut(s) 44, 83, 194, 250, 361
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw26I GTCTC 2 cut(s) 53, 210
AlwI GGATC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 484
ApeKI GCWGC 1 cut(s) 327
ApoI RAATTY 2 cut(s) 152, 356
AvaI CYCGRG 1 cut(s) 56
BbvI GCAGC 1 cut(s) 314
BccI CCATC 2 cut(s) 345, 455
BcoDI GTCTC 2 cut(s) 53, 210
BfaI CTAG 1 cut(s) 296
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
BmcAI AGTACT 1 cut(s) 276
BmeT110I CYCGRG 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 314
BshFI GGCC 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 56
BsmAI GTCTC 2 cut(s) 53, 210
BsnI GGCC 1 cut(s) 486
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 56
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 486
BspPI GGATC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 203
BstF5I GGATG 1 cut(s) 267
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 2 cut(s) 53, 210
BstMBI GATC 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 232
BsuRI GGCC 1 cut(s) 486
BtsCI GGATG 1 cut(s) 267
Csp6I GTAC 3 cut(s) 22, 275, 344
CviAII CATG 3 cut(s) 67, 220, 232
CviJI RGCY 4 cut(s) 50, 327, 376, 486
CviKI_1 RGCY 4 cut(s) 50, 327, 376, 486
CviQI GTAC 3 cut(s) 22, 275, 344
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 311
Eco147I AGGCCT 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 3 cut(s) 70, 223, 235
FaiI YATR 7 cut(s) 19, 68, 98, 123, 158, 221, 233
FatI CATG 3 cut(s) 66, 219, 231
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 1 cut(s) 274
Fsp4HI GCNGC 1 cut(s) 328
FspBI CTAG 1 cut(s) 296
GluI GCNGC 1 cut(s) 328
HaeIII GGCC 1 cut(s) 486
Hin1II CATG 3 cut(s) 70, 223, 235
HinfI GANTC 1 cut(s) 387
Hpy188I TCNGA 1 cut(s) 396
Hpy188III TCNNGA 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 44, 401
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 28
Hsp92II CATG 3 cut(s) 70, 223, 235
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 3 cut(s) 162, 238, 360
Lsp1109I GCAGC 1 cut(s) 314
MaeI CTAG 1 cut(s) 296
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 1 cut(s) 190
MfeI CAATTG 1 cut(s) 305
MluCI AATT 5 cut(s) 87, 132, 152, 305, 356
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 2 cut(s) 331, 380
MnlI CCTC 4 cut(s) 94, 221, 252, 398
MslI CAYNNNNRTG 1 cut(s) 459
MunI CAATTG 1 cut(s) 305
NdeII GATC 1 cut(s) 238
NlaIII CATG 3 cut(s) 70, 223, 235
NspI RCATGY 1 cut(s) 223
PceI AGGCCT 1 cut(s) 486
PkrI GCNGC 1 cut(s) 329
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
RsaI GTAC 3 cut(s) 23, 276, 345
RsaNI GTAC 3 cut(s) 22, 275, 344
RseI CAYNNNNRTG 1 cut(s) 459
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 1 cut(s) 238
ScaI AGTACT 1 cut(s) 276
SchI GAGTC 1 cut(s) 396
SetI ASST 6 cut(s) 36, 257, 349, 378, 409, 474
SmiMI CAYNNNNRTG 1 cut(s) 459
Sse9I AATT 5 cut(s) 87, 132, 152, 305, 356
SseBI AGGCCT 1 cut(s) 486
SsiI CCGC 1 cut(s) 202
SspI AATATT 2 cut(s) 107, 416
SspMI CTAG 1 cut(s) 296
StuI AGGCCT 1 cut(s) 486
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 476
TasI AATT 5 cut(s) 87, 132, 152, 305, 356
TatI WGTACW 1 cut(s) 274
TseI GCWGC 1 cut(s) 327
TspDTI ATGAA 2 cut(s) 26, 141
XapI RAATTY 2 cut(s) 152, 356
XceI RCATGY 1 cut(s) 223
XspI CTAG 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.