Rorug05G0355000

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000351
Physical Location & Seq
Forward (+)
44420452 .. 44420874
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0355000.1

Sequence Viewer

Length: 423 bp
ATGATAGATCCATTCTATCGTGGAAAGATCACAGAACAACAGTTGATAAAGAATGAGGTGGATCTGGAAACCATTCTGAATTGTTTTGACACAAGCAAGAAGAAGTTCGTATTTGGAGAAATGGAAATGAGTATTACAGAAGATGATGTGAAGGAAATATTCGATCTCCCTACTGAGGGAGAAGAACTAAAATTCAACAAGAAGCTGGAAAAAAAAGATGAGAAGGTCACTCGACTCTTGAAAACTGTGAACCTGGATTATGCGCTGAAAGCAGAAGTACAAAGTGCATTGACAGAAGAGCTGGCCAAGGAGAAAGAGAAAAATAAAAAAGATGGAGCTGGAAAGGCAAATAGAAAAAAAAAAGGGACAGATCAAGAATCGGAAATGCCATTTGCTGATATTTTCGCATCCTTGTTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

140

Amino Acids

16.12

Weight (kDa)

5.15

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 2, 69
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 2 cut(s) 175, 176
AgsI TTSAA 2 cut(s) 196, 241
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 3 cut(s) 205, 301, 338
AluI AGCT 3 cut(s) 205, 301, 338
AlwI GGATC 2 cut(s) 2, 69
AoxI GGCC 1 cut(s) 303
ApoI RAATTY 1 cut(s) 191
Asp700I GAANNNNTTC 2 cut(s) 72, 104
AspLEI GCGC 1 cut(s) 265
BalI TGGCCA 1 cut(s) 305
BccI CCATC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 176
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 407
BseLI CCNNNNNNNGG 2 cut(s) 175, 176
BseMII CTCAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 305
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 2 cut(s) 175, 176
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 1 cut(s) 305
Bsp143I GATC 5 cut(s) 7, 27, 61, 163, 370
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 166
BspHI TCATGA 1 cut(s) 419
BspPI GGATC 2 cut(s) 2, 69
BspQI GCTCTTC 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 5 cut(s) 7, 27, 61, 163, 370
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 42, 247
Bst6I CTCTTC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 407
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 5 cut(s) 10, 30, 64, 166, 373
BstMBI GATC 5 cut(s) 7, 27, 61, 163, 370
BstMWI GCNNNNNNNGC 2 cut(s) 269, 344
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 7, 61
BstYI RGATCY 2 cut(s) 7, 61
BsuRI GGCC 1 cut(s) 305
BtsCI GGATG 1 cut(s) 407
Cac8I GCNNGC 1 cut(s) 303
CciI TCATGA 1 cut(s) 419
CfoI GCGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 278
CviAII CATG 1 cut(s) 420
CviJI RGCY 4 cut(s) 205, 301, 305, 338
CviKI_1 RGCY 4 cut(s) 205, 301, 305, 338
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 1 cut(s) 174
DpnI GATC 5 cut(s) 9, 29, 63, 165, 372
DpnII GATC 5 cut(s) 7, 27, 61, 163, 370
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 423
FaiI YATR 2 cut(s) 261, 421
FaqI GGGAC 1 cut(s) 379
FatI CATG 1 cut(s) 419
FokI GGATG 1 cut(s) 394
GlaI GCGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 305
HhaI GCGC 1 cut(s) 265
Hin1II CATG 1 cut(s) 423
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 2 cut(s) 234, 377
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 78, 382
Hpy188III TCNNGA 4 cut(s) 65, 238, 374, 420
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 145, 217
HpyCH4III ACNGT 2 cut(s) 42, 247
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 344
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 1 cut(s) 423
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 5 cut(s) 7, 27, 61, 163, 370
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 6 cut(s) 50, 191, 239, 266, 287, 324
LweI GCATC 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 226
MalI GATC 5 cut(s) 9, 29, 63, 165, 372
MboI GATC 5 cut(s) 7, 27, 61, 163, 370
MboII GAAGA 4 cut(s) 112, 152, 194, 308
MflI RGATCY 2 cut(s) 7, 61
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 2 cut(s) 79, 191
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 2 cut(s) 49, 169
Mox20I TGGCCA 1 cut(s) 305
MroXI GAANNNNTTC 2 cut(s) 72, 104
MscI TGGCCA 1 cut(s) 305
Msp20I TGGCCA 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 269, 344
NdeII GATC 5 cut(s) 7, 27, 61, 163, 370
NlaIII CATG 1 cut(s) 423
NmuCI GTSAC 1 cut(s) 226
PagI TCATGA 1 cut(s) 419
PciSI GCTCTTC 1 cut(s) 291
PdmI GAANNNNTTC 2 cut(s) 72, 104
PfeI GAWTC 1 cut(s) 377
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PsuI RGATCY 2 cut(s) 7, 61
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 291
Sau3AI GATC 5 cut(s) 7, 27, 61, 163, 370
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 1 cut(s) 254
SetI ASST 6 cut(s) 60, 207, 228, 255, 303, 340
SfaNI GCATC 1 cut(s) 416
Sse9I AATT 2 cut(s) 79, 191
SspI AATATT 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 42, 247
TaqI TCGA 2 cut(s) 162, 232
TasI AATT 2 cut(s) 79, 191
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 1 cut(s) 377
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 408
XapI RAATTY 1 cut(s) 191
XmnI GAANNNNTTC 2 cut(s) 72, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.