Rmu_sc0002053.1_g000011

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002053.1
OG0000351
Physical Location & Seq
Reverse (-)
49599 .. 50087
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002053.1_g000011.1.cds

Sequence Viewer

Length: 489 bp
atggaagaatattgtcgcgattgctatgatgaaaatctggatctcagtagcgaagcattttgtggaaatgatggttgctttattattgaattctatcgcggaatggcaggagagtttttcaccatggaaaatatgcttctgcatgcaattgaagacccagacttccctcggtcagtagctgcatctgacttgcttctactagaaaaccagctaccttggggagttgttgaatgtttattcgaactcacaaaggaacccaatcaagaacgttcttgcaactctctaatagagctttgtggtagagtgtggagggatccgattgagactgtagtttgtggtagaccacttgggattgtagaggagaaattgagaagccgacatctacttgacacttggcgactcttctcatctggaccagaccacagatgtgaagtttatccacggttctcgctcccttcttttgcaacggagcttttgcaaattgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

162

Amino Acids

18.74

Weight (kDa)

4.48

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 340
AccII CGCG 2 cut(s) 18, 99
AciI CCGC 1 cut(s) 99
AclI AACGTT 1 cut(s) 268
AclWI GGATC 3 cut(s) 48, 308, 321
AcsI RAATTY 1 cut(s) 89
AgsI TTSAA 4 cut(s) 89, 152, 230, 485
AleI CACNNNNGTG 1 cut(s) 426
AluBI AGCT 4 cut(s) 179, 211, 292, 472
AluI AGCT 4 cut(s) 179, 211, 292, 472
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 3 cut(s) 48, 308, 321
AlwNI CAGNNNCTG 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 240
AvaII GGWCC 1 cut(s) 413
BamHI GGATCC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 327
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 255, 315
BmsI GCATC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 33
BsaJI CCNNGG 4 cut(s) 123, 167, 215, 440
Bse8I GATNNNNATC 1 cut(s) 33
BseDI CCNNGG 4 cut(s) 123, 167, 215, 440
BseJI GATNNNNATC 1 cut(s) 33
BseMII CTCAG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 166
Bsh1236I CGCG 2 cut(s) 18, 99
BsmAI GTCTC 1 cut(s) 317
Bsp119I TTCGAA 1 cut(s) 240
Bsp143I GATC 2 cut(s) 40, 313
Bsp19I CCATGG 1 cut(s) 123
Bsp68I TCGCGA 1 cut(s) 18
BspACI CCGC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 2 cut(s) 18, 99
BspLI GGNNCC 2 cut(s) 255, 315
BspPI GGATC 3 cut(s) 48, 308, 321
BspT104I TTCGAA 1 cut(s) 240
BssECI CCNNGG 4 cut(s) 123, 167, 215, 440
BssMI GATC 2 cut(s) 40, 313
BssT1I CCWWGG 2 cut(s) 123, 215
Bst4CI ACNGT 2 cut(s) 328, 444
Bst6I CTCTTC 1 cut(s) 407
BstBI TTCGAA 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 2 cut(s) 123, 440
BstFNI CGCG 2 cut(s) 18, 99
BstKTI GATC 2 cut(s) 43, 316
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 2 cut(s) 40, 313
BstNSI RCATGY 1 cut(s) 146
BstSFI CTRYAG 1 cut(s) 327
BstUI CGCG 2 cut(s) 18, 99
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 2 cut(s) 40, 313
BstYI RGATCY 2 cut(s) 40, 313
BtgI CCRYGG 2 cut(s) 123, 440
BtuMI TCGCGA 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 413
CviAII CATG 2 cut(s) 124, 143
CviJI RGCY 5 cut(s) 179, 211, 292, 375, 472
CviKI_1 RGCY 5 cut(s) 179, 211, 292, 375, 472
DdeI CTNAG 1 cut(s) 44
DpnI GATC 2 cut(s) 42, 315
DpnII GATC 2 cut(s) 40, 313
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 2 cut(s) 123, 215
Eco47I GGWCC 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 89
EcoT14I CCWWGG 2 cut(s) 123, 215
ErhI CCWWGG 2 cut(s) 123, 215
FaeI CATG 2 cut(s) 127, 146
FaiI YATR 4 cut(s) 27, 125, 134, 144
FatI CATG 2 cut(s) 123, 142
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 200
GluI GCNGC 1 cut(s) 180
Hin1II CATG 2 cut(s) 127, 146
HinfI GANTC 1 cut(s) 399
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 187, 318
Hpy188III TCNNGA 4 cut(s) 17, 38, 263, 411
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 465
HpyCH4III ACNGT 2 cut(s) 328, 444
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 6 cut(s) 142, 146, 182, 276, 464, 478
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 2 cut(s) 127, 146
Kzo9I GATC 2 cut(s) 40, 313
LmnI GCTCC 2 cut(s) 456, 469
LpnPI CCDG 6 cut(s) 23, 93, 171, 221, 396, 429
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 268
MalI GATC 2 cut(s) 42, 315
MboI GATC 2 cut(s) 40, 313
MboII GAAGA 3 cut(s) 17, 164, 394
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 2 cut(s) 40, 313
MluCI AATT 4 cut(s) 89, 147, 365, 480
MlyI GAGTC 1 cut(s) 393
MnlI CCTC 3 cut(s) 177, 303, 352
MslI CAYNNNNRTG 1 cut(s) 426
MunI CAATTG 1 cut(s) 147
MvnI CGCG 2 cut(s) 18, 99
NcoI CCATGG 1 cut(s) 123
NdeII GATC 2 cut(s) 40, 313
NlaIII CATG 2 cut(s) 127, 146
NlaIV GGNNCC 2 cut(s) 255, 315
NruI TCGCGA 1 cut(s) 18
NspI RCATGY 1 cut(s) 146
NspV TTCGAA 1 cut(s) 240
OliI CACNNNNGTG 1 cut(s) 426
PaeI GCATGC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 393
Psp1406I AACGTT 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 255, 315
PspPI GGNCC 1 cut(s) 413
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 2 cut(s) 40, 313
RruI TCGCGA 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 426
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 40, 313
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 393
SetI ASST 6 cut(s) 181, 213, 217, 271, 294, 474
SfaNI GCATC 1 cut(s) 191
SfcI CTRYAG 1 cut(s) 327
SfuI TTCGAA 1 cut(s) 240
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 426
SphI GCATGC 1 cut(s) 146
Sse9I AATT 4 cut(s) 89, 147, 365, 480
SsiI CCGC 1 cut(s) 99
SspI AATATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 200
StyI CCWWGG 2 cut(s) 123, 215
TaaI ACNGT 2 cut(s) 328, 444
TaiI ACGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 240
TaqII GACCGA 1 cut(s) 159
TasI AATT 4 cut(s) 89, 147, 365, 480
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 340
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.