Rorug02G0442400

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000351
Physical Location & Seq
Reverse (-)
56809664 .. 56812053
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0442400.1

Sequence Viewer

Length: 477 bp
ATGTCTACAACTATAATCAGCGACCCAATGGGAGGTCTATCAGCCCCAGAAAGCCAAGCAGCAGCCCCAAAACTCAATCCCCAATCAGAGATTGAGTCTGCAAAGTGTGACTGCTGTGGGCTCACAGAGGAGTGCACCCCCGCCTATATAGAACATGTCCGAGAGAGAAACATGGGCCATTGGATTTGTGGGTTGTGTTCTGAGGCTATAAAAGATGAGATTGTGAGGTCTGAGAGGCTAGTTAGCACTGAAGAAGCCATGGCTACACATATGAACTTTTGCAAGAAATTTAAGGCATCCGGGCCTCCTTTGAACCCTGCTATTCATTTGATATCTGCCATGAAACAGATTCTCCGGCGTAGTTTGGACTCTCCGAGGGGCTCGAATTCAACTCCGAATAGTCCGATGAGGATGGGTGGCCGCGCGGCGCTTACTAGGTCCGGGAGTTGCTTTCCTGCCCTGACCGGAGTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

158

Amino Acids

17.01

Weight (kDa)

6.89

Isoelectric Point (pI)

75.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 31 - 124 1e-40 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 423, 425
AciI CCGC 3 cut(s) 141, 421, 425
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 2 cut(s) 287, 385
AcuI CTGAAG 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 154
AgsI TTSAA 2 cut(s) 313, 390
Alw21I GWGCWC 1 cut(s) 137
Alw44I GTGCAC 1 cut(s) 133
AoxI GGCC 3 cut(s) 175, 302, 418
ApaLI GTGCAC 1 cut(s) 133
ApeKI GCWGC 2 cut(s) 59, 62
ApoI RAATTY 2 cut(s) 287, 385
AspLEI GCGC 2 cut(s) 425, 430
AspS9I GGNCC 3 cut(s) 175, 302, 438
AsuC2I CCSGG 2 cut(s) 301, 442
AvaII GGWCC 1 cut(s) 438
BaeGI GKGCMC 1 cut(s) 137
BanII GRGCYC 2 cut(s) 123, 383
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 71, 74
BccI CCATC 1 cut(s) 406
BcnI CCSGG 2 cut(s) 301, 442
BfaI CTAG 2 cut(s) 239, 435
BfoI RGCGCY 1 cut(s) 431
BisI GCNGC 4 cut(s) 60, 63, 421, 426
BlsI GCNGC 4 cut(s) 61, 64, 422, 427
Bme1390I CCNGG 2 cut(s) 301, 442
Bme18I GGWCC 1 cut(s) 438
BmgT120I GGNCC 3 cut(s) 175, 302, 438
BmrFI CCNGG 2 cut(s) 301, 442
BmsI GCATC 1 cut(s) 305
BpuMI CCSGG 2 cut(s) 301, 442
BsaJI CCNNGG 2 cut(s) 258, 374
BsaWI WCCGGW 1 cut(s) 464
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 258, 374
BseGI GGATG 2 cut(s) 296, 417
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 2 cut(s) 192, 222
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 137
BseXI GCAGC 2 cut(s) 71, 74
Bsh1236I CGCG 2 cut(s) 423, 425
BshFI GGCC 3 cut(s) 177, 304, 420
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 4 cut(s) 300, 355, 441, 465
BslI CCNNNNNNNGG 1 cut(s) 32
BsnI GGCC 3 cut(s) 177, 304, 420
Bsp1286I GDGCHC 3 cut(s) 123, 137, 383
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 3 cut(s) 141, 421, 425
BspANI GGCC 3 cut(s) 177, 304, 420
BspCNI CTCAG 2 cut(s) 193, 223
BspFNI CGCG 2 cut(s) 423, 425
BssECI CCNNGG 2 cut(s) 258, 374
BssT1I CCWWGG 1 cut(s) 258
BstDEI CTNAG 2 cut(s) 201, 231
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 296, 417
BstFNI CGCG 2 cut(s) 423, 425
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 2 cut(s) 425, 430
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 299, 440
BstSLI GKGCMC 1 cut(s) 137
BstUI CGCG 2 cut(s) 423, 425
BstV1I GCAGC 2 cut(s) 71, 74
BsuRI GGCC 3 cut(s) 177, 304, 420
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 296, 417
BtsIMutI CAGTG 1 cut(s) 246
CfoI GCGC 2 cut(s) 425, 430
Cfr13I GGNCC 3 cut(s) 175, 302, 438
CviAII CATG 4 cut(s) 155, 172, 259, 340
DdeI CTNAG 2 cut(s) 201, 231
EaeI YGGCCR 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 2 cut(s) 123, 383
Eco32I GATATC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 438
Eco57I CTGAAG 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 385
EcoRV GATATC 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 2 cut(s) 123, 383
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 4 cut(s) 158, 175, 262, 343
FatI CATG 4 cut(s) 154, 171, 258, 339
FauI CCCGC 1 cut(s) 148
FauNDI CATATG 1 cut(s) 270
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 60, 63, 421, 426
FokI GGATG 2 cut(s) 283, 424
FriOI GRGCYC 2 cut(s) 123, 383
Fsp4HI GCNGC 4 cut(s) 60, 63, 421, 426
FspBI CTAG 2 cut(s) 239, 435
GlaI GCGC 2 cut(s) 424, 429
GluI GCNGC 4 cut(s) 60, 63, 421, 426
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 3 cut(s) 177, 304, 420
HapII CCGG 4 cut(s) 300, 355, 441, 465
HhaI GCGC 2 cut(s) 425, 430
Hin1II CATG 4 cut(s) 158, 175, 262, 343
Hin6I GCGC 2 cut(s) 423, 428
HinP1I GCGC 2 cut(s) 423, 428
HinfI GANTC 3 cut(s) 95, 349, 368
HpaII CCGG 4 cut(s) 300, 355, 441, 465
Hpy166II GTNNAC 2 cut(s) 6, 135
Hpy188I TCNGA 7 cut(s) 88, 161, 202, 232, 375, 396, 405
Hpy8I GTNNAC 2 cut(s) 6, 135
HpyCH4V TGCA 3 cut(s) 101, 135, 282
HpyF3I CTNAG 2 cut(s) 201, 231
Hsp92II CATG 4 cut(s) 158, 175, 262, 343
HspAI GCGC 2 cut(s) 423, 428
LpnPI CCDG 7 cut(s) 60, 313, 330, 368, 454, 468, 473
Lsp1109I GCAGC 2 cut(s) 71, 74
LweI GCATC 1 cut(s) 305
MaeI CTAG 2 cut(s) 239, 435
MaeIII GTNAC 1 cut(s) 107
MboII GAAGA 1 cut(s) 263
MhlI GDGCHC 3 cut(s) 123, 137, 383
MluCI AATT 2 cut(s) 287, 385
MlyI GAGTC 2 cut(s) 104, 362
MnlI CCTC 8 cut(s) 26, 121, 196, 219, 228, 315, 369, 402
MseI TTAA 1 cut(s) 291
MspI CCGG 4 cut(s) 300, 355, 441, 465
MspR9I CCNGG 2 cut(s) 301, 442
MteI GCGCNGCGC 1 cut(s) 426
MvnI CGCG 2 cut(s) 423, 425
NciI CCSGG 2 cut(s) 301, 442
NcoI CCATGG 1 cut(s) 258
NdeI CATATG 1 cut(s) 270
NlaIII CATG 4 cut(s) 158, 175, 262, 343
NmuCI GTSAC 1 cut(s) 107
NspI RCATGY 1 cut(s) 158
PciI ACATGT 1 cut(s) 154
PfeI GAWTC 1 cut(s) 349
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 4 cut(s) 61, 64, 422, 427
PleI GAGTC 2 cut(s) 103, 362
PpsI GAGTC 2 cut(s) 103, 362
PscI ACATGT 1 cut(s) 154
PspPI GGNCC 3 cut(s) 175, 302, 438
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 4 cut(s) 60, 63, 421, 426
Sau96I GGNCC 3 cut(s) 175, 302, 438
SchI GAGTC 2 cut(s) 104, 362
ScrFI CCNGG 2 cut(s) 301, 442
SduI GDGCHC 3 cut(s) 123, 137, 383
SetI ASST 3 cut(s) 37, 230, 440
SfaNI GCATC 1 cut(s) 305
SinI GGWCC 1 cut(s) 438
Sse9I AATT 2 cut(s) 287, 385
SsiI CCGC 3 cut(s) 141, 421, 425
SspMI CTAG 2 cut(s) 239, 435
StyD4I CCNGG 2 cut(s) 299, 440
StyI CCWWGG 1 cut(s) 258
TaqI TCGA 1 cut(s) 383
TasI AATT 2 cut(s) 287, 385
TauI GCSGC 2 cut(s) 423, 428
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 2 cut(s) 59, 62
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 3 cut(s) 287, 314, 356
TspRI CASTG 1 cut(s) 253
VneI GTGCAC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 438
XapI RAATTY 2 cut(s) 287, 385
XceI RCATGY 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 239, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.