MD17G1242800.v1.1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000351
Physical Location & Seq
Forward (+)
29194897 .. 29196588
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1242800.v1.1.491

Sequence Viewer

Length: 798 bp
ATGACAGACTTAGCTGAGGAGAGCAATAGTGCAAATAGAGATCACACTGTAATTCAAGTAAGAGAGGAGGGAGAGAGATGTAAGATAGAAACGAGTGATGTGGTTAACCAAAAAACAAATAAAGACGAATTATTAGCGTCCCTCATAAAAAAAAAGCTTCCGCAGGAATTTCCAAAGCCAGATCCTACTTGCATATTCAGAGTCCCTAATAAACTTGGCAGGGACAATGAAAATGCTTTTGTCCCACAAGCGGTTCCAATCGGGCCCTATCACCACGGAGGAAAAAAGTTCGAAGCCATGGAACAAATTAAGCTATGGAATTTGCAATGCCTCCTCAAACGCAAACCAACTCCAGACACCAGTTTGGTGAAGTTTGTCAAGGAAATTCGAAGCAAAGAAGAGTTACTTCGTAACTGCTATGACGAAAAGCTTGGTGATCATCTCAGTAGCGATCAGTTTGTAGAAATGATGGTGGTCGATGGTTGCTTTACTTTAGAACTTATCCGCAAAAGGAATCCGATTTCCAGAGATCATGATGTTTTCAGTATGCCAGAGATGTTGTGGATGGTTGAAAAAGACTTGTTCCTGCTTGAAAACCAGCTCCCGTGGAAAGTTCTCGACTGTTTATTCAACCTCACAAGAACTTCAATAGAGATTTCTCTACAACAACTTACTTCGGAATTAATTTGCCAAGTCATGGATAATTCGTGTATGCACACTTACTTCATTTTACTAATTATGGATAATGAAAGGGAGACATGGCAATTCAGACATTTACTTGACAATGCAAGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

266

Amino Acids

31.04

Weight (kDa)

5.49

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 65 - 263 6.9e-47 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 697
AciI CCGC 3 cut(s) 161, 251, 505
AclWI GGATC 1 cut(s) 176
AcsI RAATTY 3 cut(s) 167, 319, 384
AfiI CCNNNNNNNGG 2 cut(s) 250, 697
AgsI TTSAA 5 cut(s) 56, 572, 593, 631, 648
AluBI AGCT 5 cut(s) 14, 157, 313, 430, 601
AluI AGCT 5 cut(s) 14, 157, 313, 430, 601
Alw26I GTCTC 1 cut(s) 749
AlwI GGATC 1 cut(s) 176
AoxI GGCC 1 cut(s) 263
ApaI GGGCCC 1 cut(s) 267
ApoI RAATTY 3 cut(s) 167, 319, 384
AseI ATTAAT 1 cut(s) 683
AspS9I GGNCC 2 cut(s) 263, 264
AsuHPI GGTGA 3 cut(s) 263, 379, 446
AsuII TTCGAA 2 cut(s) 291, 388
BaeGI GKGCMC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 267
BbvCI CCTCAGC 1 cut(s) 15
BccI CCATC 3 cut(s) 463, 473, 559
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 749
BmgT120I GGNCC 2 cut(s) 263, 264
BmiI GGNNCC 2 cut(s) 255, 265
BpmI CTGGAG 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 15
Bpu14I TTCGAA 2 cut(s) 291, 388
BsaJI CCNNGG 3 cut(s) 274, 297, 605
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 697
Bse1I ACTGG 1 cut(s) 360
Bse3DI GCAATG 1 cut(s) 332
BseDI CCNNGG 3 cut(s) 274, 297, 605
BseGI GGATG 1 cut(s) 570
BseLI CCNNNNNNNGG 2 cut(s) 250, 697
BseMI GCAATG 1 cut(s) 332
BseMII CTCAG 2 cut(s) 6, 457
BseNI ACTGG 1 cut(s) 360
BseRI GAGGAG 3 cut(s) 32, 80, 323
BseSI GKGCMC 1 cut(s) 267
BshFI GGCC 1 cut(s) 265
BslFI GGGAC 4 cut(s) 124, 188, 227, 236
BslI CCNNNNNNNGG 2 cut(s) 250, 697
BsmAI GTCTC 1 cut(s) 749
BsmFI GGGAC 4 cut(s) 124, 188, 227, 236
BsnI GGCC 1 cut(s) 265
Bsp119I TTCGAA 2 cut(s) 291, 388
Bsp120I GGGCCC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 5 cut(s) 40, 181, 436, 451, 529
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 3 cut(s) 161, 251, 505
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 2 cut(s) 7, 456
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 2 cut(s) 255, 265
BspPI GGATC 1 cut(s) 176
BspT104I TTCGAA 2 cut(s) 291, 388
BsrDI GCAATG 1 cut(s) 332
BsrI ACTGG 1 cut(s) 360
BssECI CCNNGG 3 cut(s) 274, 297, 605
BssMI GATC 5 cut(s) 40, 181, 436, 451, 529
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 49, 623
Bst6I CTCTTC 1 cut(s) 393
BstBI TTCGAA 2 cut(s) 291, 388
BstDEI CTNAG 3 cut(s) 10, 15, 443
BstDSI CCRYGG 3 cut(s) 274, 297, 605
BstF5I GGATG 1 cut(s) 570
BstKTI GATC 5 cut(s) 43, 184, 439, 454, 532
BstMAI GTCTC 1 cut(s) 749
BstMBI GATC 5 cut(s) 40, 181, 436, 451, 529
BstSLI GKGCMC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 265
BtgI CCRYGG 3 cut(s) 274, 297, 605
BtsCI GGATG 1 cut(s) 570
BtsIMutI CAGTG 1 cut(s) 45
CciI TCATGA 1 cut(s) 532
Cfr13I GGNCC 2 cut(s) 263, 264
CseI GACGC 1 cut(s) 126
CviAII CATG 4 cut(s) 298, 533, 697, 759
CviJI RGCY 8 cut(s) 14, 157, 178, 265, 296, 313, 430, 601
CviKI_1 RGCY 8 cut(s) 14, 157, 178, 265, 296, 313, 430, 601
DdeI CTNAG 3 cut(s) 10, 15, 443
DpnI GATC 5 cut(s) 42, 183, 438, 453, 531
DpnII GATC 5 cut(s) 40, 181, 436, 451, 529
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 4 cut(s) 301, 536, 700, 762
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 4 cut(s) 124, 188, 227, 236
FatI CATG 4 cut(s) 297, 532, 696, 758
FbaI TGATCA 1 cut(s) 436
FokI GGATG 1 cut(s) 577
FriOI GRGCYC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 1 cut(s) 265
HgaI GACGC 1 cut(s) 126
Hin1II CATG 4 cut(s) 301, 536, 700, 762
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 2 cut(s) 155, 428
HinfI GANTC 2 cut(s) 201, 514
HpaI GTTAAC 1 cut(s) 106
HphI GGTGA 3 cut(s) 263, 379, 446
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 4 cut(s) 200, 519, 679, 770
Hpy188III TCNNGA 4 cut(s) 353, 525, 533, 617
Hpy8I GTNNAC 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 49, 623
HpyCH4V TGCA 5 cut(s) 32, 192, 325, 715, 788
HpyF3I CTNAG 3 cut(s) 10, 15, 443
Hsp92II CATG 4 cut(s) 301, 536, 700, 762
Ksp22I TGATCA 1 cut(s) 436
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 5 cut(s) 40, 181, 436, 451, 529
LmnI GCTCC 1 cut(s) 606
LpnPI CCDG 9 cut(s) 149, 192, 205, 366, 373, 538, 564, 599, 611
MaeIII GTNAC 2 cut(s) 402, 410
MalI GATC 5 cut(s) 42, 183, 438, 453, 531
MboI GATC 5 cut(s) 40, 181, 436, 451, 529
MboII GAAGA 1 cut(s) 410
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 8 cut(s) 10, 58, 61, 152, 272, 341, 344, 644
MseI TTAA 3 cut(s) 105, 309, 683
NcoI CCATGG 1 cut(s) 297
NdeII GATC 5 cut(s) 40, 181, 436, 451, 529
NlaIII CATG 4 cut(s) 301, 536, 700, 762
NlaIV GGNNCC 2 cut(s) 255, 265
NspV TTCGAA 2 cut(s) 291, 388
PagI TCATGA 1 cut(s) 532
PfeI GAWTC 1 cut(s) 514
PflMI CCANNNNNTGG 1 cut(s) 697
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PshBI ATTAAT 1 cut(s) 683
PspN4I GGNNCC 2 cut(s) 255, 265
PspOMI GGGCCC 1 cut(s) 263
PspPI GGNCC 2 cut(s) 263, 264
PsuI RGATCY 1 cut(s) 181
SaqAI TTAA 3 cut(s) 105, 309, 683
Sau3AI GATC 5 cut(s) 40, 181, 436, 451, 529
Sau96I GGNCC 2 cut(s) 263, 264
SchI GAGTC 1 cut(s) 210
SduI GDGCHC 1 cut(s) 267
SetI ASST 6 cut(s) 16, 159, 315, 432, 603, 636
SfuI TTCGAA 2 cut(s) 291, 388
SsiI CCGC 3 cut(s) 161, 251, 505
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 49, 623
TaqI TCGA 4 cut(s) 291, 388, 477, 618
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 3 cut(s) 105, 309, 683
Tru9I TTAA 3 cut(s) 105, 309, 683
TscAI CASTG 1 cut(s) 52
TspDTI ATGAA 3 cut(s) 243, 715, 762
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 697
VspI ATTAAT 1 cut(s) 683
XapI RAATTY 3 cut(s) 167, 319, 384
XcmI CCANNNNNNNNNTGG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.