Rh2AG185500

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000351
Physical Location & Seq
Forward (+)
18114374 .. 18114613
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG185500.1

Sequence Viewer

Length: 240 bp
ATGGAAGAAGCTAAAAAATTGTATTTGCAAGGTCTCCTTGATCGAAAGCCAACTTCAGAGACCAGCTTGCATAACTTTGTCAAAGAAATTAGAAGCATAGTAGAACAAGACTGCCGCAACTGTTATGATGAAAAATTCCATCACTTGTCTATTGACAAGTTTGTGGAAATAATGGTGGTTGATGGTTGCTTTGTTATTGAACTGTTCCGCAAGTTTTCAGGAGAGGTGATCAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

79

Amino Acids

9.34

Weight (kDa)

5.88

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 75 4.9e-18 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 115, 208
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 39
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 2 cut(s) 11, 66
AluI AGCT 2 cut(s) 11, 66
Alw26I GTCTC 2 cut(s) 38, 53
ApoI RAATTY 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 238
BccI CCATC 2 cut(s) 147, 176
BclI TGATCA 1 cut(s) 228
BcoDI GTCTC 2 cut(s) 38, 53
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
BsaI GGTCTC 2 cut(s) 38, 53
BsmAI GTCTC 2 cut(s) 38, 53
Bso31I GGTCTC 2 cut(s) 38, 53
Bsp143I GATC 2 cut(s) 40, 228
BspACI CCGC 2 cut(s) 115, 208
BspTNI GGTCTC 2 cut(s) 38, 53
BssMI GATC 2 cut(s) 40, 228
Bst4CI ACNGT 2 cut(s) 122, 204
BstC8I GCNNGC 1 cut(s) 68
BstKTI GATC 2 cut(s) 43, 231
BstMAI GTCTC 2 cut(s) 38, 53
BstMBI GATC 2 cut(s) 40, 228
Cac8I GCNNGC 1 cut(s) 68
CviJI RGCY 3 cut(s) 11, 49, 66
CviKI_1 RGCY 3 cut(s) 11, 49, 66
DpnI GATC 2 cut(s) 42, 230
DpnII GATC 2 cut(s) 40, 228
Eco31I GGTCTC 2 cut(s) 38, 53
Eco57I CTGAAG 1 cut(s) 39
FaiI YATR 3 cut(s) 72, 98, 126
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FbaI TGATCA 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 115
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 219, 232
HpyCH4III ACNGT 2 cut(s) 122, 204
HpyCH4V TGCA 2 cut(s) 28, 70
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 2 cut(s) 40, 228
LpnPI CCDG 2 cut(s) 76, 204
MalI GATC 2 cut(s) 42, 230
MboI GATC 2 cut(s) 40, 228
MboII GAAGA 1 cut(s) 17
MluCI AATT 4 cut(s) 17, 87, 134, 235
MnlI CCTC 1 cut(s) 217
NdeII GATC 2 cut(s) 40, 228
PkrI GCNGC 1 cut(s) 116
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 2 cut(s) 40, 228
SetI ASST 4 cut(s) 13, 34, 68, 228
SgeI CNNG 9 cut(s) 41, 50, 75, 79, 119, 157, 169, 223, 231
Sse9I AATT 4 cut(s) 17, 87, 134, 235
SsiI CCGC 2 cut(s) 115, 208
TaaI ACNGT 2 cut(s) 122, 204
TaqI TCGA 1 cut(s) 43
TasI AATT 4 cut(s) 17, 87, 134, 235
TauI GCSGC 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 144
XapI RAATTY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.