Rh2DG665500

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000351
Physical Location & Seq
Reverse (-)
89058167 .. 89058445
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG665500.1

Sequence Viewer

Length: 279 bp
ATGGAAGAATATTGTCGCGATTGCTATGATGAAAATATGGATCTCAGTAGCGAAGCATTTTGTGGAAATGACGGTTGCTTTATTATTGAATTCTATCGCGGAATGGCAGGAGAGCTTTTCACCATGGAAAATATGCTTCTGCATACAATCGAAGGCCCAGACTTCCCTCGGTCAGTAGCTGCATCTGACTTGCTTCTACTAGAAAACCTTGGGGAGTTGTTGAATGTTTATTCGAACTCACAAAGGAACCCAATCAAGAACGTTCTTGCAACTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

92

Amino Acids

10.42

Weight (kDa)

4.09

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 69 1.7e-06 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 18, 99
AciI CCGC 1 cut(s) 99
AclI AACGTT 1 cut(s) 261
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 89
AgsI TTSAA 2 cut(s) 89, 223
AluBI AGCT 2 cut(s) 115, 179
AluI AGCT 2 cut(s) 115, 179
AlwI GGATC 1 cut(s) 48
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 233
BbvI GCAGC 1 cut(s) 166
BfaI CTAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 248
BmsI GCATC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 123, 167, 208
BseDI CCNNGG 3 cut(s) 123, 167, 208
BseMII CTCAG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 166
Bsh1236I CGCG 2 cut(s) 18, 99
BshFI GGCC 1 cut(s) 156
BsnI GGCC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 233
Bsp143I GATC 1 cut(s) 40
Bsp19I CCATGG 1 cut(s) 123
Bsp68I TCGCGA 1 cut(s) 18
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 2 cut(s) 18, 99
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 123, 167, 208
BssMI GATC 1 cut(s) 40
BssT1I CCWWGG 2 cut(s) 123, 208
Bst4CI ACNGT 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 123
BstFNI CGCG 2 cut(s) 18, 99
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstUI CGCG 2 cut(s) 18, 99
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 123
BtuMI TCGCGA 1 cut(s) 18
CaiI CAGNNNCTG 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 155
CviAII CATG 1 cut(s) 124
CviJI RGCY 3 cut(s) 115, 156, 179
CviKI_1 RGCY 3 cut(s) 115, 156, 179
DdeI CTNAG 1 cut(s) 44
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 123, 208
EcoRI GAATTC 1 cut(s) 89
EcoT14I CCWWGG 2 cut(s) 123, 208
ErhI CCWWGG 2 cut(s) 123, 208
FaeI CATG 1 cut(s) 127
FaiI YATR 5 cut(s) 27, 38, 125, 134, 144
FatI CATG 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 200
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 156
Hin1II CATG 1 cut(s) 127
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 17, 256
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 3 cut(s) 142, 182, 269
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 2 cut(s) 93, 171
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 261
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 1 cut(s) 17
MflI RGATCY 1 cut(s) 40
MluCI AATT 1 cut(s) 89
MnlI CCTC 1 cut(s) 177
MvnI CGCG 2 cut(s) 18, 99
NcoI CCATGG 1 cut(s) 123
NdeII GATC 1 cut(s) 40
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 248
NruI TCGCGA 1 cut(s) 18
NspV TTCGAA 1 cut(s) 233
PkrI GCNGC 1 cut(s) 181
Psp1406I AACGTT 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 40
RruI TCGCGA 1 cut(s) 18
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 155
SetI ASST 4 cut(s) 117, 181, 210, 264
SfaNI GCATC 1 cut(s) 191
SfuI TTCGAA 1 cut(s) 233
Sse9I AATT 1 cut(s) 89
SsiI CCGC 1 cut(s) 99
SspI AATATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 200
StyI CCWWGG 2 cut(s) 123, 208
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 150, 233
TaqII GACCGA 1 cut(s) 159
TasI AATT 1 cut(s) 89
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 45
XapI RAATTY 1 cut(s) 89
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.