Rorug02G0560600

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000351
Physical Location & Seq
Forward (+)
68625748 .. 68626345
598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0560600.1

Sequence Viewer

Length: 273 bp
ATGATCGGAGAGCACGACGTTGAAATAGAACCCCTCGTTGCGCTCGGAAAATCTGAGGCCGATGAAGGCGTGCTTGTCGGTGCCGTCCTCGATCTTAAGGACGAAGTAGCTCGACGAGTCGAGCACGGTCTCGATGGAGGTCGCTGGAGTTCGGATCCTCAAGTCGGATCTCGCACTGGTCGATTGATTTGTGTGATCGCGGTGGTGAAGATGTTGACAAAGTTTGAGACGAAGAGTAATAAGAGTGAAGGGAGTACTGCGCTTCCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

90

Amino Acids

9.66

Weight (kDa)

5.08

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AccII CGCG 1 cut(s) 200
AciI CCGC 1 cut(s) 200
AclWI GGATC 3 cut(s) 149, 162, 175
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 164
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw21I GWGCWC 2 cut(s) 15, 126
Alw26I GTCTC 2 cut(s) 134, 221
AlwI GGATC 3 cut(s) 149, 162, 175
AoxI GGCC 1 cut(s) 57
AspLEI GCGC 2 cut(s) 43, 262
AsuHPI GGTGA 1 cut(s) 217
BamHI GGATCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 80
Bbv12I GWGCWC 2 cut(s) 15, 126
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 134, 221
BfrI CTTAAG 1 cut(s) 95
BmcAI AGTACT 1 cut(s) 256
BmiI GGNNCC 2 cut(s) 82, 156
BpmI CTGGAG 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 80
BsiHKAI GWGCWC 2 cut(s) 15, 126
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 134, 221
BsmBI CGTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 59
Bso31I GGTCTC 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 15, 126
Bsp143I GATC 5 cut(s) 3, 91, 154, 167, 195
BspACI CCGC 1 cut(s) 200
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 82, 156
BspPI GGATC 3 cut(s) 149, 162, 175
BspT107I GGYRCC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 181
BssMI GATC 5 cut(s) 3, 91, 154, 167, 195
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 227
BstAFI CTTAAG 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 200
BstHHI GCGC 2 cut(s) 43, 262
BstKTI GATC 5 cut(s) 6, 94, 157, 170, 198
BstMAI GTCTC 2 cut(s) 134, 221
BstMBI GATC 5 cut(s) 3, 91, 154, 167, 195
BstUI CGCG 1 cut(s) 200
BstX2I RGATCY 2 cut(s) 154, 167
BstYI RGATCY 2 cut(s) 154, 167
BsuRI GGCC 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 71
CfoI GCGC 2 cut(s) 43, 262
Csp6I GTAC 1 cut(s) 255
CviJI RGCY 2 cut(s) 59, 110
CviKI_1 RGCY 2 cut(s) 59, 110
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 54
DpnI GATC 5 cut(s) 5, 93, 156, 169, 197
DpnII GATC 5 cut(s) 3, 91, 154, 167, 195
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco31I GGTCTC 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 221
FaiI YATR 1 cut(s) 268
FalI AAGNNNNNCTT 2 cut(s) 57, 89
GlaI GCGC 2 cut(s) 42, 261
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 1 cut(s) 59
HhaI GCGC 2 cut(s) 43, 262
Hin6I GCGC 2 cut(s) 41, 260
HinP1I GCGC 2 cut(s) 41, 260
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 1 cut(s) 117
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 5 cut(s) 8, 47, 55, 154, 167
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 216
Hpy99I CGWCG 2 cut(s) 20, 117
HpyAV CCTTC 2 cut(s) 59, 242
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 18
HspAI GCGC 2 cut(s) 41, 260
Kzo9I GATC 5 cut(s) 3, 91, 154, 167, 195
LpnPI CCDG 2 cut(s) 130, 162
MaeII ACGT 1 cut(s) 18
MalI GATC 5 cut(s) 5, 93, 156, 169, 197
MboI GATC 5 cut(s) 3, 91, 154, 167, 195
MboII GAAGA 2 cut(s) 220, 244
MflI RGATCY 2 cut(s) 154, 167
MhlI GDGCHC 2 cut(s) 15, 126
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 5 cut(s) 44, 49, 98, 131, 168
MseI TTAA 1 cut(s) 96
MspCI CTTAAG 1 cut(s) 95
MvnI CGCG 1 cut(s) 200
NdeII GATC 5 cut(s) 3, 91, 154, 167, 195
NlaIV GGNNCC 2 cut(s) 82, 156
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 178
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PspN4I GGNNCC 2 cut(s) 82, 156
PsuI RGATCY 2 cut(s) 154, 167
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 5 cut(s) 3, 91, 154, 167, 195
ScaI AGTACT 1 cut(s) 256
SchI GAGTC 1 cut(s) 126
SduI GDGCHC 2 cut(s) 15, 126
SetI ASST 3 cut(s) 21, 112, 142
SmlI CTYRAG 2 cut(s) 95, 159
SmoI CTYRAG 2 cut(s) 95, 159
SsiI CCGC 1 cut(s) 200
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 21
TaqI TCGA 5 cut(s) 90, 112, 120, 132, 181
TatI WGTACW 1 cut(s) 254
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 1 cut(s) 181
Vha464I CTTAAG 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.