Rroxscaffold_2G00087170

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000351
Physical Location & Seq
Reverse (-)
9257287 .. 9258055
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087170.1

Sequence Viewer

Length: 318 bp
ATGGAGATTCCAAGAATACGTATTTACAGTAATCAATCTCTCTTCATAAACTTCATCGCCCTTGAACAGTGTAAACAAGGGCGCATTGGATATGACTTTACCTCTTATGCCAAGACCTTGCATTACCTTATTAAGTCTAGCAAAGATGTGGACTTTCTCATGCAGAATGGAATTATAAGTACAAATTTGAGCAAGGAGGACATAGCATGCCCTTCAACAGTGTTTGCAGTAATTACGCCACAGCCACCTCTGAGTCTTTTGATAAACTTACCAGGGAAGCAGGAACCGCGAACAATGAAAATTGGATTCCTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

105

Amino Acids

11.9

Weight (kDa)

8.62

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 67 2.2e-14 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AccII CGCG 1 cut(s) 289
AciI CCGC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 184
AfaI GTAC 1 cut(s) 181
AgsI TTSAA 2 cut(s) 65, 216
AjnI CCWGG 1 cut(s) 271
ApoI RAATTY 1 cut(s) 184
AspLEI GCGC 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 273
BfaI CTAG 2 cut(s) 138, 311
Bme1390I CCNGG 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 272
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 242
Bsh1236I CGCG 1 cut(s) 289
BspACI CCGC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 243
BspFNI CGCG 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 3 cut(s) 29, 69, 220
Bst6I CTCTTC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 271
BstSNI TACGTA 1 cut(s) 20
BstUI CGCG 1 cut(s) 289
BtgZI GCGATG 1 cut(s) 40
BtsIMutI CAGTG 2 cut(s) 74, 225
Cac8I GCNNGC 1 cut(s) 208
CfoI GCGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 180
CviAII CATG 2 cut(s) 160, 207
CviJI RGCY 1 cut(s) 244
CviKI_1 RGCY 1 cut(s) 244
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco105I TACGTA 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 2 cut(s) 163, 210
FaiI YATR 7 cut(s) 47, 93, 108, 161, 176, 203, 208
FatI CATG 2 cut(s) 159, 206
FspBI CTAG 2 cut(s) 138, 311
GlaI GCGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 163, 210
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 3 cut(s) 7, 253, 306
Hpy166II GTNNAC 2 cut(s) 74, 151
Hpy188I TCNGA 1 cut(s) 252
Hpy8I GTNNAC 2 cut(s) 74, 151
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 3 cut(s) 29, 69, 220
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 121, 163, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 2 cut(s) 163, 210
HspAI GCGC 1 cut(s) 82
LpnPI CCDG 3 cut(s) 258, 266, 285
MaeI CTAG 2 cut(s) 138, 311
MaeII ACGT 1 cut(s) 19
MboII GAAGA 1 cut(s) 34
MluCI AATT 4 cut(s) 171, 184, 231, 300
MlyI GAGTC 1 cut(s) 262
MnlI CCTC 3 cut(s) 112, 190, 258
MseI TTAA 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 286
NlaIII CATG 2 cut(s) 163, 210
NlaIV GGNNCC 1 cut(s) 285
NspI RCATGY 1 cut(s) 210
PaeI GCATGC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 7, 306
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
Ppu21I YACGTR 1 cut(s) 20
PsiI TTATAA 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 285
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 132
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 273
SetI ASST 5 cut(s) 22, 104, 119, 129, 250
SnaBI TACGTA 1 cut(s) 20
SphI GCATGC 1 cut(s) 210
Sse9I AATT 4 cut(s) 171, 184, 231, 300
SsiI CCGC 1 cut(s) 287
SspMI CTAG 2 cut(s) 138, 311
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 3 cut(s) 29, 69, 220
TaiI ACGT 1 cut(s) 22
TasI AATT 4 cut(s) 171, 184, 231, 300
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 2 cut(s) 7, 306
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 2 cut(s) 74, 225
TspDTI ATGAA 3 cut(s) 34, 43, 311
TspRI CASTG 2 cut(s) 74, 225
XapI RAATTY 1 cut(s) 184
XceI RCATGY 1 cut(s) 210
XspI CTAG 2 cut(s) 138, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.