Rroxscaffold_3G00230460

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000351
Physical Location & Seq
Reverse (-)
15300570 .. 15319375
18806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230460.1

Sequence Viewer

Length: 573 bp
ATGCGACGAGAGTTGACTAAGGTTTTGAAAGAATATTGGATGACCAAGAAATTGGATTGCTACGTGGTGGAACCACTTTCTAATGCGAGTGTTGTGGTTGATGCATGCGACGAGTTGACTAAGGTTTTGAAAGAATATTGGATGACCAAGAGGACGATTGCCACTGTTTCAAAGCTAGAAAAGAATTGCATTATGACAGAGAGTAATGTGAACGGCGAATGCTTGATCGAAATTAGAGACGAGGAAGAGAATGGGATTGCAACAAATAATGTGAATAGCCAAACTTTGAGTGAATATATTCGAAATGAAGATCAAGTCATAGCATACTCCATTCTAGGAAAACTTCGTCCGCAAGCTCCATCACCACCTAGTGCTTGCATATATAGAATCCCCGATCTACAACTACAAAAGAGGCTGCACGAAAAGGATTTTGTTCCGATTTTAGTTTCAATTGGACCATTTCACCATGGAAAAAAGAACCTGCAAGCAATGGAAAGAATGAAACTATGGTACCTGCACAACCTCCTTATTCGAAAAGCCACTCCCCGAGACCAACATGGAACACATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

190

Amino Acids

22.01

Weight (kDa)

8.48

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 127 - 180 1.4e-11 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 489, 522
Acc65I GGTACC 1 cut(s) 510
AccB1I GGYRCC 1 cut(s) 510
AciI CCGC 1 cut(s) 350
AdeI CACNNNGTG 1 cut(s) 371
AfaI GTAC 1 cut(s) 512
AgsI TTSAA 4 cut(s) 28, 130, 171, 450
AluBI AGCT 2 cut(s) 175, 356
AluI AGCT 2 cut(s) 175, 356
Alw26I GTCTC 2 cut(s) 231, 543
Ama87I CYCGRG 1 cut(s) 546
ApeKI GCWGC 1 cut(s) 415
ArsI GACNNNNNNTTYG 4 cut(s) 7, 39, 109, 141
Asp700I GAANNNNTTC 1 cut(s) 297
Asp718I GGTACC 1 cut(s) 510
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 2 cut(s) 354, 455
AsuII TTCGAA 2 cut(s) 301, 532
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 1 cut(s) 455
BaeI ACNNNNGTAYC 2 cut(s) 494, 527
BanI GGYRCC 1 cut(s) 510
BbvI GCAGC 1 cut(s) 402
BccI CCATC 1 cut(s) 367
BceAI ACGGC 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 231, 543
BfaI CTAG 3 cut(s) 176, 335, 369
BfuAI ACCTGC 2 cut(s) 489, 522
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme18I GGWCC 1 cut(s) 455
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 2 cut(s) 72, 512
BmsI GCATC 1 cut(s) 91
Bpu14I TTCGAA 2 cut(s) 301, 532
BsaAI YACGTR 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 543
BsaJI CCNNGG 1 cut(s) 466
Bse3DI GCAATG 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 2 cut(s) 45, 147
BseMI GCAATG 1 cut(s) 495
BseXI GCAGC 1 cut(s) 402
BsgI GTGCAG 2 cut(s) 401, 500
BshNI GGYRCC 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 546
BsmAI GTCTC 2 cut(s) 231, 543
BsmBI CGTCTC 1 cut(s) 231
BsmI GAATGC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 543
BsoBI CYCGRG 1 cut(s) 546
Bsp119I TTCGAA 2 cut(s) 301, 532
Bsp143I GATC 3 cut(s) 225, 310, 394
Bsp19I CCATGG 1 cut(s) 466
BspACI CCGC 1 cut(s) 350
BspLI GGNNCC 2 cut(s) 72, 512
BspMI ACCTGC 2 cut(s) 489, 522
BspT104I TTCGAA 2 cut(s) 301, 532
BspT107I GGYRCC 1 cut(s) 510
BspTNI GGTCTC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 495
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 3 cut(s) 225, 310, 394
BssT1I CCWWGG 1 cut(s) 466
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 64
BstBI TTCGAA 2 cut(s) 301, 532
BstC8I GCNNGC 4 cut(s) 106, 354, 376, 486
BstDEI CTNAG 2 cut(s) 18, 120
BstDSI CCRYGG 1 cut(s) 466
BstF5I GGATG 2 cut(s) 45, 147
BstKTI GATC 3 cut(s) 228, 313, 397
BstMAI GTCTC 2 cut(s) 231, 543
BstMBI GATC 3 cut(s) 225, 310, 394
BstNSI RCATGY 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 402
BstXI CCANNNNNNTGG 1 cut(s) 52
BtgI CCRYGG 1 cut(s) 466
BtsCI GGATG 2 cut(s) 45, 147
BtsIMutI CAGTG 1 cut(s) 162
BveI ACCTGC 2 cut(s) 489, 522
Cac8I GCNNGC 4 cut(s) 106, 354, 376, 486
Cfr13I GGNCC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 511
CviAII CATG 3 cut(s) 105, 467, 557
CviJI RGCY 5 cut(s) 175, 279, 356, 415, 539
CviKI_1 RGCY 5 cut(s) 175, 279, 356, 415, 539
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 2 cut(s) 18, 120
DpnI GATC 3 cut(s) 227, 312, 396
DpnII GATC 3 cut(s) 225, 310, 394
DraIII CACNNNGTG 1 cut(s) 371
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 466
Eco31I GGTCTC 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 546
EcoT14I CCWWGG 1 cut(s) 466
EcoT22I ATGCAT 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 466
Esp3I CGTCTC 1 cut(s) 231
FaeI CATG 3 cut(s) 108, 470, 560
FatI CATG 3 cut(s) 104, 466, 556
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 2 cut(s) 52, 154
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 3 cut(s) 176, 335, 369
GluI GCNGC 1 cut(s) 416
Hin1II CATG 3 cut(s) 108, 470, 560
HincII GTYRAC 2 cut(s) 15, 117
HindII GTYRAC 2 cut(s) 15, 117
HinfI GANTC 1 cut(s) 387
HphI GGTGA 2 cut(s) 354, 455
Hpy166II GTNNAC 3 cut(s) 15, 117, 211
Hpy188I TCNGA 1 cut(s) 438
Hpy8I GTNNAC 3 cut(s) 15, 117, 211
Hpy99I CGWCG 2 cut(s) 9, 113
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 7 cut(s) 104, 189, 260, 378, 418, 484, 517
HpyF3I CTNAG 2 cut(s) 18, 120
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 3 cut(s) 108, 470, 560
KpnI GGTACC 1 cut(s) 514
Kzo9I GATC 3 cut(s) 225, 310, 394
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 2 cut(s) 494, 527
Lsp1109I GCAGC 1 cut(s) 402
LweI GCATC 1 cut(s) 91
MaeI CTAG 3 cut(s) 176, 335, 369
MaeII ACGT 1 cut(s) 63
MalI GATC 3 cut(s) 227, 312, 396
MboI GATC 3 cut(s) 225, 310, 394
MboII GAAGA 2 cut(s) 257, 320
MfeI CAATTG 1 cut(s) 450
MluCI AATT 4 cut(s) 50, 184, 231, 450
MnlI CCTC 4 cut(s) 144, 235, 405, 533
Mph1103I ATGCAT 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 297
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 224
NcoI CCATGG 1 cut(s) 466
NdeII GATC 3 cut(s) 225, 310, 394
NlaIII CATG 3 cut(s) 108, 470, 560
NlaIV GGNNCC 2 cut(s) 72, 512
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 108
NspV TTCGAA 2 cut(s) 301, 532
PaeI GCATGC 1 cut(s) 108
PctI GAATGC 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 387
PkrI GCNGC 1 cut(s) 417
Ppu21I YACGTR 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 72, 512
PspPI GGNCC 1 cut(s) 455
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 3 cut(s) 225, 310, 394
Sau96I GGNCC 1 cut(s) 455
SetI ASST 9 cut(s) 24, 66, 126, 177, 358, 370, 483, 516, 525
SfaNI GCATC 1 cut(s) 91
SfuI TTCGAA 2 cut(s) 301, 532
SinI GGWCC 1 cut(s) 455
SphI GCATGC 1 cut(s) 108
Sse9I AATT 4 cut(s) 50, 184, 231, 450
SsiI CCGC 1 cut(s) 350
SspI AATATT 2 cut(s) 35, 137
SspMI CTAG 3 cut(s) 176, 335, 369
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 228, 301, 532
TasI AATT 4 cut(s) 50, 184, 231, 450
TfiI GAWTC 1 cut(s) 387
TscAI CASTG 1 cut(s) 169
TseI GCWGC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 321, 515
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 455
XceI RCATGY 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 3 cut(s) 176, 335, 369
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.