Rh7AG407800

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000351
Physical Location & Seq
Forward (+)
54204963 .. 54206399
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG407800.1

Sequence Viewer

Length: 1437 bp
ATGAAAGAGGACGACTACCGTACCACTGTTTCAAAGCTAGAAAAGAATTGCATTATGACAGAGAGTAATGTGAACAGCGAATGCTTGATCGAAATTAGAGACGAGGAAGAGAATGGGATTGCAACAAATAATGTGAATAGCCAAACTTTGAGTGAATATATTAGAAATGAAGATCAAGTCATAGCATACTCCATTCTAGGAAAACTTCGTCTGCAAGCTCCATCACCACCTAGTGCTTGCGTATATAGAATCCCCGATCTACAACTACAAAAGAGGCTGCACGAAAAGGATTTTGTTCCGAGTTTAGTTTCAATTGGACCATTTCACCATGGAAAAAAGAACCTGCAAGCAATGGAAAGAATGAAACTATGGTACCTGCGCAACCTCCTTATTCGAAAAGCCACTCCCGAGACCAACATGGAACACATTGTTGAAAAAATTAGGAGTATGGAGGAGTATTGTCGTGATTGCTATGATGAAAAAATTGATCTGAGTAGTGCAAAGTTTGTAGAGATGTTGGTAGTTGATGGTTTCTTTATTATTGAACTCTTCCGCAAAATGATAGGAGACATGCCCAGAGGCGTGGATGATCCTCTATTCAATAGGTCAGGGATGTTGTCGATAGTACAAAATGACTTGCTTCTACTAGAAAACCAACTGCCTTGGAGAGTTCTTGACTGCTTATTCCATCAAGTACCTGGTGGAAAATGCAAGTCCCTTTGGGAGCTTACTCAAAGGATCCTTCCGAGTTGGAGAGGTTTAGAATATTTTGTTTCTCATGTTCCAAATACATTGCAAAGCAGACATTTACTCGACACTCTTAGAATCCTTTCAGTTGAATTTGAATCGGACAAGAACGAGAAGGTTTGTCCATTTCGGGTGCGGATACCCTCTGTGACAGAGCTTCTCCAAGTCGGAGTCAAATTTAGACGTAAAAGAGGTTTCGACAGCATACTTAACATAACCTTGCTCGATGGAGTGATGGAGATTGCACCAATAACTTTGGACGCCGAAAAATCTGTCTTCAGAAACCTCATAGCCTTGGAAGAGTATGAACCAAGGCACCATAAGTATCAAATTACCTCTTATGCCAGGGTCATGCATGACCTTATTAACTCTAGCAAAGATGTGGAGTTTCTCATGCAAAAAGGCATTATTAACACCATTAGTCTGCGAAAGGAGGACATAGTCTATTTCTTCAACACCATTCTTGATGATAGTAATACAGTCTCCTCTTGTTCCTCTATCGTGTTACTATCCGCCGGAGTGACCGAGTATTATGATCACCGTTGGCTACGAAGATGGATAGCGTCAATCAAGGGTGATTACTTGTACAATCCATCATCAATATGGTCAATCTCTAATGCAGTTGTGTTTATAACAATTTTGACCATCATACAAACCGTGTATTCAGTTCTCTCTTACTACAAGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

478

Amino Acids

55.52

Weight (kDa)

6.3

Isoelectric Point (pI)

51.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 82 - 460 5.6e-89 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1379
Acc16I TGCGCA 1 cut(s) 380
Acc36I ACCTGC 2 cut(s) 351, 384
Acc65I GGTACC 1 cut(s) 372
AccB1I GGYRCC 2 cut(s) 372, 1062
AciI CCGC 3 cut(s) 553, 883, 1260
AclWI GGATC 3 cut(s) 584, 733, 746
AcsI RAATTY 2 cut(s) 839, 923
AcuI CTGAAG 1 cut(s) 1009
AcyI GRCGYC 1 cut(s) 1008
AdeI CACNNNGTG 1 cut(s) 233
AfaI GTAC 5 cut(s) 22, 374, 627, 696, 1334
AgsI TTSAA 8 cut(s) 33, 312, 434, 545, 601, 839, 845, 1201
AjnI CCWGG 2 cut(s) 697, 1091
AluBI AGCT 4 cut(s) 37, 218, 727, 904
AluI AGCT 4 cut(s) 37, 218, 727, 904
Alw26I GTCTC 4 cut(s) 93, 404, 561, 1234
AlwI GGATC 3 cut(s) 584, 733, 746
Ama87I CYCGRG 1 cut(s) 407
ApeKI GCWGC 1 cut(s) 277
ApoI RAATTY 2 cut(s) 839, 923
ArsI GACNNNNNNTTYG 2 cut(s) 1005, 1037
Asp700I GAANNNNTTC 1 cut(s) 829
Asp718I GGTACC 1 cut(s) 372
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 4 cut(s) 216, 317, 1277, 1334
AsuII TTCGAA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 407
AvaII GGWCC 1 cut(s) 317
BaeI ACNNNNGTAYC 3 cut(s) 37, 356, 389
BamHI GGATCC 1 cut(s) 738
BanI GGYRCC 2 cut(s) 372, 1062
BbsI GAAGAC 1 cut(s) 1015
BbvI GCAGC 1 cut(s) 264
BccI CCATC 8 cut(s) 229, 521, 696, 968, 976, 1296, 1348, 1400
BciT130I CCWGG 2 cut(s) 699, 1093
BciVI GTATCC 1 cut(s) 879
BclI TGATCA 1 cut(s) 1282
BcoDI GTCTC 4 cut(s) 93, 404, 561, 1234
BfaI CTAG 5 cut(s) 38, 197, 231, 647, 1119
BfuAI ACCTGC 2 cut(s) 351, 384
BfuI GTATCC 1 cut(s) 879
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 2 cut(s) 699, 1093
Bme18I GGWCC 1 cut(s) 317
BmeT110I CYCGRG 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 3 cut(s) 374, 740, 1064
BmrFI CCNGG 2 cut(s) 699, 1093
BpiI GAAGAC 1 cut(s) 1015
Bpu14I TTCGAA 1 cut(s) 394
BsaHI GRCGYC 1 cut(s) 1008
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 5 cut(s) 328, 662, 1041, 1058, 1092
Bse3DI GCAATG 2 cut(s) 357, 791
BseBI CCWGG 2 cut(s) 699, 1093
BseDI CCNNGG 5 cut(s) 328, 662, 1041, 1058, 1092
BseGI GGATG 2 cut(s) 592, 618
BseMI GCAATG 2 cut(s) 357, 791
BseMII CTCAG 1 cut(s) 482
BseRI GAGGAG 2 cut(s) 467, 1222
BseXI GCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 263
BshNI GGYRCC 2 cut(s) 372, 1062
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 1 cut(s) 1263
BslFI GGGAC 1 cut(s) 700
BsmAI GTCTC 4 cut(s) 93, 404, 561, 1234
BsmBI CGTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 86
Bso31I GGTCTC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 407
Bsp119I TTCGAA 1 cut(s) 394
Bsp1407I TGTACA 1 cut(s) 1332
Bsp143I GATC 7 cut(s) 87, 172, 256, 487, 589, 738, 1282
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 3 cut(s) 553, 883, 1260
BspCNI CTCAG 1 cut(s) 483
BspLI GGNNCC 3 cut(s) 374, 740, 1064
BspMI ACCTGC 2 cut(s) 351, 384
BspPI GGATC 3 cut(s) 584, 733, 746
BspT104I TTCGAA 1 cut(s) 394
BspT107I GGYRCC 2 cut(s) 372, 1062
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 2 cut(s) 357, 791
BsrGI TGTACA 1 cut(s) 1332
BssECI CCNNGG 5 cut(s) 328, 662, 1041, 1058, 1092
BssMI GATC 7 cut(s) 87, 172, 256, 487, 589, 738, 1282
BssNI GRCGYC 1 cut(s) 1008
BssT1I CCWWGG 4 cut(s) 328, 662, 1041, 1058
Bst2UI CCWGG 2 cut(s) 699, 1093
Bst4CI ACNGT 5 cut(s) 20, 28, 1228, 1289, 1405
Bst6I CTCTTC 3 cut(s) 102, 554, 1041
BstACI GRCGYC 1 cut(s) 1008
BstAUI TGTACA 1 cut(s) 1332
BstBI TTCGAA 1 cut(s) 394
BstC8I GCNNGC 3 cut(s) 216, 238, 348
BstDEI CTNAG 2 cut(s) 491, 821
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 2 cut(s) 592, 618
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 7 cut(s) 90, 175, 259, 490, 592, 741, 1285
BstMAI GTCTC 4 cut(s) 93, 404, 561, 1234
BstMBI GATC 7 cut(s) 87, 172, 256, 487, 589, 738, 1282
BstNI CCWGG 2 cut(s) 699, 1093
BstNSI RCATGY 1 cut(s) 574
BstSCI CCNGG 2 cut(s) 697, 1091
BstV1I GCAGC 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 1015
BstX2I RGATCY 1 cut(s) 738
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 1 cut(s) 738
BsuI GTATCC 1 cut(s) 879
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 2 cut(s) 592, 618
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 2 cut(s) 351, 384
Cac8I GCNNGC 3 cut(s) 216, 238, 348
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 2 cut(s) 1016, 1299
CsiI ACCWGGT 1 cut(s) 697
Csp6I GTAC 5 cut(s) 21, 373, 626, 695, 1333
CviAII CATG 7 cut(s) 329, 418, 571, 779, 1099, 1103, 1141
CviJI RGCY 9 cut(s) 37, 141, 218, 277, 401, 727, 904, 1040, 1294
CviKI_1 RGCY 9 cut(s) 37, 141, 218, 277, 401, 727, 904, 1040, 1294
CviQI GTAC 5 cut(s) 21, 373, 626, 695, 1333
DdeI CTNAG 2 cut(s) 491, 821
DpnI GATC 7 cut(s) 89, 174, 258, 489, 591, 740, 1284
DpnII GATC 7 cut(s) 87, 172, 256, 487, 589, 738, 1282
DraIII CACNNNGTG 1 cut(s) 233
Eam1104I CTCTTC 3 cut(s) 102, 554, 1041
EarI CTCTTC 3 cut(s) 102, 554, 1041
EciI GGCGGA 1 cut(s) 1249
Eco130I CCWWGG 4 cut(s) 328, 662, 1041, 1058
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 1009
Eco88I CYCGRG 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 697, 1091
EcoT14I CCWWGG 4 cut(s) 328, 662, 1041, 1058
EcoT22I ATGCAT 1 cut(s) 1104
ErhI CCWWGG 4 cut(s) 328, 662, 1041, 1058
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 7 cut(s) 332, 421, 574, 782, 1102, 1106, 1144
FaqI GGGAC 1 cut(s) 700
FatI CATG 7 cut(s) 328, 417, 570, 778, 1098, 1102, 1140
FbaI TGATCA 1 cut(s) 1282
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 2 cut(s) 599, 625
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 5 cut(s) 38, 197, 231, 647, 1119
FspI TGCGCA 1 cut(s) 380
GlaI GCGC 1 cut(s) 380
GluI GCNGC 1 cut(s) 278
HapII CCGG 1 cut(s) 1263
HgaI GACGC 2 cut(s) 1016, 1299
HhaI GCGC 1 cut(s) 381
Hin1I GRCGYC 1 cut(s) 1008
Hin1II CATG 7 cut(s) 332, 421, 574, 782, 1102, 1106, 1144
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HinfI GANTC 4 cut(s) 249, 825, 845, 918
HpaII CCGG 1 cut(s) 1263
HphI GGTGA 4 cut(s) 216, 317, 1277, 1334
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 6 cut(s) 300, 492, 747, 850, 917, 1028
Hpy188III TCNNGA 4 cut(s) 407, 464, 674, 1211
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 752, 856
HpyCH4III ACNGT 5 cut(s) 20, 28, 1228, 1289, 1405
HpyCH4IV ACGT 1 cut(s) 931
HpyF3I CTNAG 2 cut(s) 491, 821
HpySE526I ACGT 1 cut(s) 931
Hsp92I GRCGYC 1 cut(s) 1008
Hsp92II CATG 7 cut(s) 332, 421, 574, 782, 1102, 1106, 1144
HspAI GCGC 1 cut(s) 379
KpnI GGTACC 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 1282
Kzo9I GATC 7 cut(s) 87, 172, 256, 487, 589, 738, 1282
LmnI GCTCC 2 cut(s) 223, 724
LpnPI CCDG 9 cut(s) 356, 389, 589, 594, 684, 711, 1078, 1105, 1276
Lsp1109I GCAGC 1 cut(s) 264
MabI ACCWGGT 1 cut(s) 697
MaeI CTAG 5 cut(s) 38, 197, 231, 647, 1119
MaeII ACGT 1 cut(s) 931
MaeIII GTNAC 3 cut(s) 895, 1251, 1267
MalI GATC 7 cut(s) 89, 174, 258, 489, 591, 740, 1284
MboI GATC 7 cut(s) 87, 172, 256, 487, 589, 738, 1282
MboII GAAGA 7 cut(s) 119, 182, 541, 1015, 1058, 1189, 1311
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 1 cut(s) 738
MluCI AATT 9 cut(s) 46, 93, 312, 438, 483, 839, 923, 1077, 1383
MlyI GAGTC 1 cut(s) 927
MmeI TCCRAC 2 cut(s) 731, 895
Mph1103I ATGCAT 1 cut(s) 1104
MroXI GAANNNNTTC 1 cut(s) 829
MseI TTAA 3 cut(s) 957, 1113, 1158
MslI CAYNNNNRTG 1 cut(s) 1348
MspI CCGG 1 cut(s) 1263
MspR9I CCNGG 2 cut(s) 699, 1093
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 2 cut(s) 699, 1093
NcoI CCATGG 1 cut(s) 328
NdeII GATC 7 cut(s) 87, 172, 256, 487, 589, 738, 1282
NlaIII CATG 7 cut(s) 332, 421, 574, 782, 1102, 1106, 1144
NlaIV GGNNCC 3 cut(s) 374, 740, 1064
NmuCI GTSAC 2 cut(s) 895, 1267
NsbI TGCGCA 1 cut(s) 380
NsiI ATGCAT 1 cut(s) 1104
NspI RCATGY 1 cut(s) 574
NspV TTCGAA 1 cut(s) 394
PctI GAATGC 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 829
PfeI GAWTC 3 cut(s) 249, 825, 845
PflFI GACNNNGTC 1 cut(s) 1187
PkrI GCNGC 1 cut(s) 279
PleI GAGTC 1 cut(s) 926
PpsI GAGTC 1 cut(s) 926
PsiI TTATAA 1 cut(s) 1379
Psp6I CCWGG 2 cut(s) 697, 1091
PspGI CCWGG 2 cut(s) 697, 1091
PspN4I GGNNCC 3 cut(s) 374, 740, 1064
PspPI GGNCC 1 cut(s) 317
PsuI RGATCY 1 cut(s) 738
PsyI GACNNNGTC 1 cut(s) 1187
RsaI GTAC 5 cut(s) 22, 374, 627, 696, 1334
RsaNI GTAC 5 cut(s) 21, 373, 626, 695, 1333
RseI CAYNNNNRTG 1 cut(s) 1348
SaqAI TTAA 3 cut(s) 957, 1113, 1158
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 7 cut(s) 87, 172, 256, 487, 589, 738, 1282
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 927
ScrFI CCNGG 2 cut(s) 699, 1093
SexAI ACCWGGT 1 cut(s) 697
SfuI TTCGAA 1 cut(s) 394
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 1348
Sse9I AATT 9 cut(s) 46, 93, 312, 438, 483, 839, 923, 1077, 1383
SsiI CCGC 3 cut(s) 553, 883, 1260
SspI AATATT 1 cut(s) 767
SspMI CTAG 5 cut(s) 38, 197, 231, 647, 1119
StyD4I CCNGG 2 cut(s) 697, 1091
StyI CCWWGG 4 cut(s) 328, 662, 1041, 1058
TaaI ACNGT 5 cut(s) 20, 28, 1228, 1289, 1405
TaiI ACGT 1 cut(s) 934
TaqI TCGA 6 cut(s) 90, 394, 620, 813, 945, 972
TaqII GACCGA 1 cut(s) 1286
TasI AATT 9 cut(s) 46, 93, 312, 438, 483, 839, 923, 1077, 1383
TatI WGTACW 2 cut(s) 625, 1332
TfiI GAWTC 3 cut(s) 249, 825, 845
Tru1I TTAA 3 cut(s) 957, 1113, 1158
Tru9I TTAA 3 cut(s) 957, 1113, 1158
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 2 cut(s) 895, 1267
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 2 cut(s) 895, 1267
TspDTI ATGAA 5 cut(s) 17, 183, 377, 492, 1068
TspRI CASTG 1 cut(s) 31
Tth111I GACNNNGTC 1 cut(s) 1187
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 2 cut(s) 839, 923
XceI RCATGY 1 cut(s) 574
XcmI CCANNNNNNNNNTGG 2 cut(s) 695, 1347
XmnI GAANNNNTTC 1 cut(s) 829
XspI CTAG 5 cut(s) 38, 197, 231, 647, 1119
Zsp2I ATGCAT 1 cut(s) 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.