Rw2G047220

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000351
Physical Location & Seq
Forward (+)
74581616 .. 74582694
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G047220.1

Sequence Viewer

Length: 1041 bp
ATGGAAGGAATTAAACTATGGTACTTGCGTTCCCTCCTTCATCGAACACCAACTCCTGAAACCAGTTTGGAGCATTTGGTCAAAAGTATTAGAGCCATAGAACAACTTTGTCGCGATTGCTATGACAATGAAAGTAATCTGAGTAGTGATCAGTTTGTAGAAGTGATGGTGGTTGATGGTTGCTTCATCGTTGAATTCATGCTCAAGACAGAACATAGAGAGTGTGTGACTGATTCTGTAACTGAAAATCTATGGATACGTTCACCTCTCATATCTGACTTGTTTCTACTCAAAAACCAGCTGCCTTGGCGGCTAGTACTTGAATGTTTATTCCAACTGATAAAGGAAAATACTTGTAATGAATCTGTTGGAAAGTACACTTCTCTATCTGAGCTCACTCACAAAATCATGGAGTTTTGCACTATTGGCCATCTAGAGAGTACTGGTGGAGCATATGAAATCAGGCACTTACTTGACTACATGAGAGCAGCTATAGTTGGACCAAAAACAATAACCATTCTTACTCTTCCTCGTTACTTGTTTCCCTGTGTGACAGACCTGCTACAACTTGGAGTCAGATTTAAATCTAGAGATATGATGGAGATTCCTCAGATTTTTGTTCACAAAAATGAATCTCTTTTTCTAAACCTCATTGCCCTTGAACAGTGTGAACAAGGGCGCATTGGATATGATTTTACCTCATATGCCAGGGTCCCGCATTACCTTATTAAGTCAGGCAAAGATGCAGACTTTCTCATGCAGAAGGGAATCATAAAAACCAGATTAAGCAAGGAGGACATAGCTTGTCTCTTCAATGGTGTTTGCAATAACACTGCATTTGCTTCTGACTCTTTCTCTGATCTCTCCCGGGAAGTTCACTTGTTTTCCAAGGAGCGTTGGCTGCAGAGATGCCTAATTAGCATTAAACGGGATTATTTATACAATCCATCTTCAATCTGGACAATTTCTAATGCGGTCTTCCTTGTCATAATTCTCACATTCACACAAACCTTATATACTGTTCTCTCTTACTACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

346

Amino Acids

40.13

Weight (kDa)

6.32

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 330 7.9e-62 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 567
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 310, 716, 974
AcoI YGGCCR 1 cut(s) 427
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 4 cut(s) 23, 318, 377, 442
AgsI TTSAA 5 cut(s) 194, 323, 662, 814, 954
AjnI CCWGG 1 cut(s) 707
AloI GAACNNNNNNTCC 2 cut(s) 37, 69
AluBI AGCT 4 cut(s) 301, 394, 491, 803
AluI AGCT 4 cut(s) 301, 394, 491, 803
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 812
Ama87I CYCGRG 1 cut(s) 867
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 3 cut(s) 301, 488, 901
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 1 cut(s) 681
AspS9I GGNCC 2 cut(s) 500, 712
AsuC2I CCSGG 2 cut(s) 868, 869
AsuHPI GGTGA 1 cut(s) 255
AvaI CYCGRG 1 cut(s) 867
AvaII GGWCC 2 cut(s) 500, 712
BaeI ACNNNNGTAYC 2 cut(s) 13, 46
BalI TGGCCA 1 cut(s) 429
BanII GRGCYC 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 970
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 288, 500, 888
BccI CCATC 5 cut(s) 160, 170, 438, 592, 955
BciT130I CCWGG 1 cut(s) 709
BciVI GTATCC 1 cut(s) 249
BclI TGATCA 1 cut(s) 148
BcnI CCSGG 2 cut(s) 868, 869
BcoDI GTCTC 1 cut(s) 812
BfaI CTAG 3 cut(s) 314, 434, 588
BfmI CTRYAG 2 cut(s) 492, 902
BfuAI ACCTGC 1 cut(s) 567
BfuI GTATCC 1 cut(s) 249
BglI GCCNNNNNGGC 1 cut(s) 310
BisI GCNGC 4 cut(s) 302, 311, 489, 902
BlsI GCNGC 4 cut(s) 303, 312, 490, 903
BmcAI AGTACT 2 cut(s) 318, 442
Bme1390I CCNGG 3 cut(s) 709, 868, 869
Bme18I GGWCC 2 cut(s) 500, 712
BmeT110I CYCGRG 1 cut(s) 867
BmgT120I GGNCC 2 cut(s) 500, 712
BmiI GGNNCC 2 cut(s) 713, 714
BmrFI CCNGG 3 cut(s) 709, 868, 869
BmsI GCATC 2 cut(s) 733, 899
BpiI GAAGAC 1 cut(s) 970
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 2 cut(s) 868, 869
BsaBI GATNNNNATC 1 cut(s) 583
BsaJI CCNNGG 4 cut(s) 305, 708, 867, 888
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bse1I ACTGG 2 cut(s) 63, 448
Bse3DI GCAATG 1 cut(s) 651
Bse8I GATNNNNATC 1 cut(s) 583
BseBI CCWGG 1 cut(s) 709
BseDI CCNNGG 4 cut(s) 305, 708, 867, 888
BseJI GATNNNNATC 1 cut(s) 583
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 3 cut(s) 131, 381, 623
BseNI ACTGG 2 cut(s) 63, 448
BseXI GCAGC 3 cut(s) 288, 500, 888
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 867
BsiSI CCGG 1 cut(s) 868
BslFI GGGAC 1 cut(s) 698
BsmAI GTCTC 1 cut(s) 812
BsmFI GGGAC 1 cut(s) 698
BsnI GGCC 1 cut(s) 429
BsoBI CYCGRG 1 cut(s) 867
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 2 cut(s) 148, 859
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 3 cut(s) 310, 716, 974
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 3 cut(s) 132, 382, 622
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 713, 714
BspMAI CTGCAG 1 cut(s) 906
BspMI ACCTGC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 651
BsrI ACTGG 2 cut(s) 63, 448
BssECI CCNNGG 4 cut(s) 305, 708, 867, 888
BssMI GATC 2 cut(s) 148, 859
BssT1I CCWWGG 2 cut(s) 305, 888
Bst2UI CCWGG 1 cut(s) 709
Bst4CI ACNGT 2 cut(s) 666, 1021
Bst6I CTCTTC 2 cut(s) 531, 815
BstDEI CTNAG 3 cut(s) 140, 390, 609
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 2 cut(s) 151, 862
BstMAI GTCTC 1 cut(s) 812
BstMBI GATC 2 cut(s) 148, 859
BstMWI GCNNNNNNNGC 5 cut(s) 307, 310, 426, 901, 918
BstNI CCWGG 1 cut(s) 709
BstSCI CCNGG 3 cut(s) 707, 866, 867
BstSFI CTRYAG 2 cut(s) 492, 902
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 288, 500, 888
BstV2I GAAGAC 1 cut(s) 970
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 429
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 2 cut(s) 671, 831
BtuMI TCGCGA 1 cut(s) 114
BveI ACCTGC 1 cut(s) 567
CfoI GCGC 1 cut(s) 681
Cfr13I GGNCC 2 cut(s) 500, 712
Cfr9I CCCGGG 1 cut(s) 867
Csp6I GTAC 4 cut(s) 22, 317, 376, 441
CviAII CATG 4 cut(s) 199, 409, 481, 757
CviJI RGCY 8 cut(s) 95, 301, 313, 394, 429, 491, 803, 901
CviKI_1 RGCY 8 cut(s) 95, 301, 313, 394, 429, 491, 803, 901
CviQI GTAC 4 cut(s) 22, 317, 376, 441
DdeI CTNAG 3 cut(s) 140, 390, 609
DpnI GATC 2 cut(s) 150, 861
DpnII GATC 2 cut(s) 148, 859
DraI TTTAAA 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 2 cut(s) 531, 815
EarI CTCTTC 2 cut(s) 531, 815
Ecl136II GAGCTC 1 cut(s) 394
Eco130I CCWWGG 2 cut(s) 305, 888
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 2 cut(s) 500, 712
Eco53kI GAGCTC 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 867
EcoICRI GAGCTC 1 cut(s) 394
EcoO109I RGGNCCY 1 cut(s) 712
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 707
EcoT14I CCWWGG 2 cut(s) 305, 888
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 2 cut(s) 305, 888
FaeI CATG 4 cut(s) 202, 412, 484, 760
FaqI GGGAC 1 cut(s) 698
FatI CATG 4 cut(s) 198, 408, 480, 756
FauI CCCGC 1 cut(s) 723
FauNDI CATATG 2 cut(s) 454, 703
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 302, 311, 489, 902
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 4 cut(s) 302, 311, 489, 902
FspBI CTAG 3 cut(s) 314, 434, 588
GlaI GCGC 1 cut(s) 680
GluI GCNGC 4 cut(s) 302, 311, 489, 902
HaeIII GGCC 1 cut(s) 429
HapII CCGG 1 cut(s) 868
HhaI GCGC 1 cut(s) 681
Hin1II CATG 4 cut(s) 202, 412, 484, 760
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HinfI GANTC 7 cut(s) 233, 362, 573, 604, 632, 768, 848
HpaII CCGG 1 cut(s) 868
HphI GGTGA 1 cut(s) 255
Hpy166II GTNNAC 5 cut(s) 263, 378, 622, 671, 877
Hpy188I TCNGA 7 cut(s) 141, 277, 391, 578, 612, 847, 859
Hpy188III TCNNGA 6 cut(s) 56, 113, 205, 434, 588, 958
Hpy8I GTNNAC 5 cut(s) 263, 378, 622, 671, 877
HpyAV CCTTC 2 cut(s) 47, 757
HpyCH4III ACNGT 2 cut(s) 666, 1021
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 6 cut(s) 420, 746, 760, 825, 836, 904
HpyF10VI GCNNNNNNNGC 5 cut(s) 307, 310, 426, 901, 918
HpyF3I CTNAG 3 cut(s) 140, 390, 609
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 4 cut(s) 202, 412, 484, 760
HspAI GCGC 1 cut(s) 679
KflI GGGWCCC 1 cut(s) 712
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 2 cut(s) 148, 859
LmnI GCTCC 3 cut(s) 70, 449, 892
Lsp1109I GCAGC 3 cut(s) 288, 500, 888
LweI GCATC 2 cut(s) 733, 899
MaeI CTAG 3 cut(s) 314, 434, 588
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 4 cut(s) 226, 238, 533, 550
MalI GATC 2 cut(s) 150, 861
MboI GATC 2 cut(s) 148, 859
MboII GAAGA 4 cut(s) 518, 802, 942, 970
MhlI GDGCHC 1 cut(s) 396
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 5 cut(s) 9, 194, 915, 963, 990
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 2 cut(s) 582, 842
MmeI TCCRAC 3 cut(s) 349, 358, 478
MnlI CCTC 7 cut(s) 44, 276, 540, 618, 659, 709, 787
Mox20I TGGCCA 1 cut(s) 429
MscI TGGCCA 1 cut(s) 429
MseI TTAA 5 cut(s) 12, 582, 729, 785, 924
MslI CAYNNNNRTG 1 cut(s) 627
Msp20I TGGCCA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 1 cut(s) 868
MspR9I CCNGG 3 cut(s) 709, 868, 869
MvaI CCWGG 1 cut(s) 709
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 5 cut(s) 307, 310, 426, 901, 918
NciI CCSGG 2 cut(s) 868, 869
NdeI CATATG 2 cut(s) 454, 703
NdeII GATC 2 cut(s) 148, 859
NlaIII CATG 4 cut(s) 202, 412, 484, 760
NlaIV GGNNCC 2 cut(s) 713, 714
NmuCI GTSAC 2 cut(s) 226, 550
NruI TCGCGA 1 cut(s) 114
PfeI GAWTC 5 cut(s) 233, 362, 604, 632, 768
PkrI GCNGC 4 cut(s) 303, 312, 490, 903
PleI GAGTC 2 cut(s) 581, 842
PpsI GAGTC 2 cut(s) 581, 842
PpuMI RGGWCCY 1 cut(s) 712
Psp124BI GAGCTC 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 712
Psp6I CCWGG 1 cut(s) 707
PspGI CCWGG 1 cut(s) 707
PspN4I GGNNCC 2 cut(s) 713, 714
PspPI GGNCC 2 cut(s) 500, 712
PspPPI RGGWCCY 1 cut(s) 712
PstI CTGCAG 1 cut(s) 906
PvuII CAGCTG 1 cut(s) 301
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 4 cut(s) 23, 318, 377, 442
RsaNI GTAC 4 cut(s) 22, 317, 376, 441
RseI CAYNNNNRTG 1 cut(s) 627
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 5 cut(s) 12, 582, 729, 785, 924
SatI GCNGC 4 cut(s) 302, 311, 489, 902
Sau3AI GATC 2 cut(s) 148, 859
Sau96I GGNCC 2 cut(s) 500, 712
ScaI AGTACT 2 cut(s) 318, 442
SchI GAGTC 2 cut(s) 582, 842
ScrFI CCNGG 3 cut(s) 709, 868, 869
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 2 cut(s) 733, 899
SfcI CTRYAG 2 cut(s) 492, 902
SinI GGWCC 2 cut(s) 500, 712
SmaI CCCGGG 1 cut(s) 869
SmiI ATTTAAAT 1 cut(s) 583
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 5 cut(s) 9, 194, 915, 963, 990
SsiI CCGC 3 cut(s) 310, 716, 974
SspMI CTAG 3 cut(s) 314, 434, 588
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 3 cut(s) 707, 866, 867
StyI CCWWGG 2 cut(s) 305, 888
SwaI ATTTAAAT 1 cut(s) 583
TaaI ACNGT 2 cut(s) 666, 1021
TaiI ACGT 1 cut(s) 262
TaqI TCGA 1 cut(s) 43
TasI AATT 5 cut(s) 9, 194, 915, 963, 990
TatI WGTACW 3 cut(s) 316, 375, 440
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 5 cut(s) 233, 362, 604, 632, 768
Tru1I TTAA 5 cut(s) 12, 582, 729, 785, 924
Tru9I TTAA 5 cut(s) 12, 582, 729, 785, 924
TscAI CASTG 2 cut(s) 671, 838
TseFI GTSAC 2 cut(s) 226, 550
TseI GCWGC 3 cut(s) 301, 488, 901
Tsp45I GTSAC 2 cut(s) 226, 550
TspDTI ATGAA 7 cut(s) 29, 144, 175, 187, 375, 471, 645
TspMI CCCGGG 1 cut(s) 867
TspRI CASTG 2 cut(s) 671, 838
VpaK11BI GGWCC 2 cut(s) 500, 712
XapI RAATTY 1 cut(s) 194
XbaI TCTAGA 2 cut(s) 433, 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 954
XmaI CCCGGG 1 cut(s) 867
XspI CTAG 3 cut(s) 314, 434, 588
ZrmI AGTACT 2 cut(s) 318, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.