Rorug05G0355100

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000351
Physical Location & Seq
Forward (+)
44488131 .. 44492751
4621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0355100.1

Sequence Viewer

Length: 837 bp
ATGGCTGTGTTACAGAGTCACAGAGCAGAAATGCTAAGCATAGCCGTGGCTGTAGTCGCCATTGGTGTTGGTACGGCCTACTATTTCTACGTCACCAGAAAACCAAAAGGTTGCTTGGATCCTGAGAAATTCAAGGAATTCAAACTTGTTAAACGCACTCAGCTCAGCCATAATGTGGCTAAGTTTAAGTTTGCTCTTCCAACAGCAACATCAGTGTTCGGTCTGCCTATTGGACAGCATATAAGTTGCAGAGGAAAAGATAGTCTTAATGAAGAAGTTATCAAAGCATATACCCCAACCACTTTGGATACAGATGTTGGATACTTTGAATTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCTCACCATTTTCGAGTCATGAGTGAAGGTGATTATCTCGCTGTAAAAGGACCTAAGGGTCGATTCAAGTATCAGCCTAACCAAGTTAGAGCTTTTGGGATGCTAGCTGGAGGCACTGGCATCACTCCAATGTTCCAGGTTGCTAGAGCCATAATGGAAAATCCCAGTGACAGAACGAATGTACATCTCATATATGGCAATGTCACATATGATGACATTCTATTGAAAGAAGAGCTGGATAATCTAGCCATTAACTTTCCCAATCGTTTCAACATTTATTATGTTTTAAATCAGCCCCCTGAAGGCTGGGAAGGTGGTGTTGGGTTCATATCAAAAGAAATTATTCAGACTCACTGCCCTGCACCAGCACCCGATATTAAGATTTTAAGATGCGGACCACCACCTATGAACAAGGCTATGGCTGCTAACCTGGACAGTCTTGGATACAGTTCGGAAATGCAGTTCCAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

278

Amino Acids

31.07

Weight (kDa)

8.89

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_6 PF00970 47 - 145 2e-31 Oxidoreductase FAD-binding domain
NAD_binding_1 PF00175 155 - 261 2.2e-30 Oxidoreductase NAD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 420
AccB7I CCANNNNNTGG 1 cut(s) 175
AciI CCGC 1 cut(s) 756
AclWI GGATC 2 cut(s) 113, 126
AcsI RAATTY 2 cut(s) 128, 137
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 2 cut(s) 73, 546
AfiI CCNNNNNNNGG 3 cut(s) 175, 357, 665
AgsI TTSAA 6 cut(s) 133, 142, 329, 430, 589, 634
AjnI CCWGG 2 cut(s) 498, 792
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AloI GAACNNNNNNTCC 1 cut(s) 809
AluBI AGCT 4 cut(s) 163, 455, 470, 598
AluI AGCT 4 cut(s) 163, 455, 470, 598
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 2 cut(s) 113, 126
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 785
ApoI RAATTY 2 cut(s) 128, 137
Asp700I GAANNNNTTC 1 cut(s) 705
AspS9I GGNCC 2 cut(s) 413, 758
AsuHPI GGTGA 3 cut(s) 85, 359, 404
AsuNHI GCTAGC 1 cut(s) 466
AvaII GGWCC 2 cut(s) 413, 758
AxyI CCTNAGG 1 cut(s) 417
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BamHI GGATCC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 772
BceAI ACGGC 2 cut(s) 29, 90
BciT130I CCWGG 2 cut(s) 500, 794
BciVI GTATCC 4 cut(s) 301, 314, 357, 800
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 3 cut(s) 467, 507, 608
BfmI CTRYAG 1 cut(s) 51
BfuI GTATCC 4 cut(s) 301, 314, 357, 800
BisI GCNGC 1 cut(s) 786
BlpI GCTNAGC 2 cut(s) 35, 164
BlsI GCNGC 1 cut(s) 787
Bme1390I CCNGG 2 cut(s) 500, 794
Bme18I GGWCC 2 cut(s) 413, 758
BmgT120I GGNCC 2 cut(s) 413, 758
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 500, 794
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 3 cut(s) 453, 492, 743
BmtI GCTAGC 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 522
BpmI CTGGAG 1 cut(s) 492
Bpu1102I GCTNAGC 2 cut(s) 35, 164
BsaJI CCNNGG 2 cut(s) 45, 352
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 357, 665
Bse1I ACTGG 3 cut(s) 484, 528, 829
Bse21I CCTNAGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 568
BseBI CCWGG 2 cut(s) 500, 794
BseDI CCNNGG 2 cut(s) 45, 352
BseGI GGATG 2 cut(s) 366, 468
BseLI CCNNNNNNNGG 3 cut(s) 175, 357, 665
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 3 cut(s) 114, 173, 178
BseNI ACTGG 3 cut(s) 484, 528, 829
BseXI GCAGC 1 cut(s) 772
BseYI CCCAGC 1 cut(s) 669
BsgI GTGCAG 1 cut(s) 708
BshFI GGCC 1 cut(s) 77
BslI CCNNNNNNNGG 3 cut(s) 175, 357, 665
BsmAI GTCTC 1 cut(s) 369
BsnI GGCC 1 cut(s) 77
Bsp1407I TGTACA 1 cut(s) 544
Bsp143I GATC 1 cut(s) 118
Bsp1720I GCTNAGC 2 cut(s) 35, 164
BspACI CCGC 1 cut(s) 756
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 3 cut(s) 115, 172, 177
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 120
BspOI GCTAGC 1 cut(s) 470
BspPI GGATC 2 cut(s) 113, 126
BspQI GCTCTTC 2 cut(s) 201, 588
BsrDI GCAATG 1 cut(s) 568
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 3 cut(s) 484, 528, 829
BssECI CCNNGG 2 cut(s) 45, 352
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 2 cut(s) 500, 794
Bst4CI ACNGT 2 cut(s) 800, 812
Bst6I CTCTTC 2 cut(s) 201, 588
BstAUI TGTACA 1 cut(s) 544
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 6 cut(s) 35, 123, 159, 164, 180, 417
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 366, 468
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 56, 785
BstNI CCWGG 2 cut(s) 500, 794
BstSCI CCNGG 2 cut(s) 498, 792
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 772
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
Bsu36I CCTNAGG 1 cut(s) 417
BsuI GTATCC 4 cut(s) 301, 314, 357, 800
BsuRI GGCC 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 366, 468
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 4 cut(s) 219, 477, 535, 715
Cac8I GCNNGC 1 cut(s) 468
CciI TCATGA 1 cut(s) 381
Cfr13I GGNCC 2 cut(s) 413, 758
Csp6I GTAC 2 cut(s) 72, 545
CviAII CATG 1 cut(s) 382
CviQI GTAC 2 cut(s) 72, 545
DdeI CTNAG 6 cut(s) 35, 123, 159, 164, 180, 417
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
DraI TTTAAA 1 cut(s) 651
DrdI GACNNNNNNGTC 1 cut(s) 420
DseDI GACNNNNNNGTC 1 cut(s) 420
Eam1104I CTCTTC 2 cut(s) 201, 588
EarI CTCTTC 2 cut(s) 201, 588
Eco130I CCWWGG 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 413, 758
Eco57I CTGAAG 1 cut(s) 684
Eco81I CCTNAGG 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 498, 792
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 1 cut(s) 385
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FatI CATG 1 cut(s) 381
FauNDI CATATG 1 cut(s) 571
Fnu4HI GCNGC 1 cut(s) 786
FokI GGATG 2 cut(s) 373, 475
Fsp4HI GCNGC 1 cut(s) 786
FspBI CTAG 3 cut(s) 467, 507, 608
GluI GCNGC 1 cut(s) 786
GsaI CCCAGC 1 cut(s) 673
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 1 cut(s) 385
HinfI GANTC 4 cut(s) 16, 378, 426, 712
HphI GGTGA 3 cut(s) 85, 359, 404
Hpy188I TCNGA 2 cut(s) 711, 817
Hpy188III TCNNGA 2 cut(s) 122, 382
HpyAV CCTTC 4 cut(s) 351, 383, 659, 668
HpyCH4III ACNGT 2 cut(s) 800, 812
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 249, 725, 823
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 785
HpyF3I CTNAG 6 cut(s) 35, 123, 159, 164, 180, 417
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 1 cut(s) 385
Kzo9I GATC 1 cut(s) 118
LguI GCTCTTC 2 cut(s) 201, 588
Lsp1109I GCAGC 1 cut(s) 772
LweI GCATC 3 cut(s) 453, 492, 743
MaeI CTAG 3 cut(s) 467, 507, 608
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 5 cut(s) 9, 17, 91, 530, 565
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 3 cut(s) 188, 284, 605
MflI RGATCY 1 cut(s) 118
MluCI AATT 4 cut(s) 128, 137, 329, 702
MlyI GAGTC 3 cut(s) 25, 387, 706
MmeI TCCRAC 2 cut(s) 224, 298
MnlI CCTC 2 cut(s) 245, 467
MroXI GAANNNNTTC 1 cut(s) 705
MseI TTAA 8 cut(s) 150, 186, 267, 615, 650, 741, 749, 835
MslI CAYNNNNRTG 3 cut(s) 44, 341, 491
MspR9I CCNGG 2 cut(s) 500, 794
MvaI CCWGG 2 cut(s) 500, 794
MwoI GCNNNNNNNGC 2 cut(s) 56, 785
NdeI CATATG 1 cut(s) 571
NdeII GATC 1 cut(s) 118
NheI GCTAGC 1 cut(s) 466
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 4 cut(s) 17, 91, 530, 565
PagI TCATGA 1 cut(s) 381
PciSI GCTCTTC 2 cut(s) 201, 588
PdmI GAANNNNTTC 1 cut(s) 705
PfeI GAWTC 1 cut(s) 426
PflMI CCANNNNNTGG 1 cut(s) 175
PkrI GCNGC 1 cut(s) 787
PleI GAGTC 3 cut(s) 24, 386, 706
PpsI GAGTC 3 cut(s) 24, 386, 706
PpuMI RGGWCCY 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 413
Psp6I CCWGG 2 cut(s) 498, 792
PspFI CCCAGC 1 cut(s) 669
PspGI CCWGG 2 cut(s) 498, 792
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 2 cut(s) 413, 758
PspPPI RGGWCCY 1 cut(s) 413
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 2 cut(s) 73, 546
RsaNI GTAC 2 cut(s) 72, 545
RseI CAYNNNNRTG 3 cut(s) 44, 341, 491
SapI GCTCTTC 2 cut(s) 201, 588
SaqAI TTAA 8 cut(s) 150, 186, 267, 615, 650, 741, 749, 835
SatI GCNGC 1 cut(s) 786
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 2 cut(s) 413, 758
SchI GAGTC 3 cut(s) 25, 387, 706
ScrFI CCNGG 2 cut(s) 500, 794
SfaNI GCATC 3 cut(s) 453, 492, 743
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 2 cut(s) 413, 758
SmiMI CAYNNNNRTG 3 cut(s) 44, 341, 491
Sse9I AATT 4 cut(s) 128, 137, 329, 702
SsiI CCGC 1 cut(s) 756
SspMI CTAG 3 cut(s) 467, 507, 608
StyD4I CCNGG 2 cut(s) 498, 792
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 800, 812
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 376, 424
TaqII GACCGA 1 cut(s) 209
TasI AATT 4 cut(s) 128, 137, 329, 702
TatI WGTACW 1 cut(s) 544
TfiI GAWTC 1 cut(s) 426
Tru1I TTAA 8 cut(s) 150, 186, 267, 615, 650, 741, 749, 835
Tru9I TTAA 8 cut(s) 150, 186, 267, 615, 650, 741, 749, 835
TscAI CASTG 4 cut(s) 219, 484, 535, 722
TseFI GTSAC 4 cut(s) 17, 91, 530, 565
TseI GCWGC 1 cut(s) 785
Tsp45I GTSAC 4 cut(s) 17, 91, 530, 565
TspDTI ATGAA 3 cut(s) 285, 679, 785
TspRI CASTG 4 cut(s) 219, 484, 535, 722
Van91I CCANNNNNTGG 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 413, 758
XapI RAATTY 2 cut(s) 128, 137
XmnI GAANNNNTTC 1 cut(s) 705
XspI CTAG 3 cut(s) 467, 507, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.