Rroxscaffold_2G00087250

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000351
Physical Location & Seq
Reverse (-)
9321234 .. 9331056
9823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087250.1

Sequence Viewer

Length: 1842 bp
ATGATGATAGAGAGTAACATGGATAACGACCACACCTGGATTGAAATTAGAGAAGATGAAGGGAATTTGACAGGAGCAGATAATGTGGAGGAGCAAATTTTGAGAGACAATAGAAATGAAGAAGACGAATTATTAGCATCATCGATTCGAGGAAAGTTTTTTGAGCCACCTCCATCTCCACCTTGCATATTTAAAATTCCCAAGATGCTTCAGGGTCCTAATGAAGCTGAGTTGATACTTCCAAAGTTAGTATCAATTGGGCCATATCTCCATGGTAAAAAGAACCTGCAAACCATGGAAAGAATAAAATTATGCTACTTGCATTGCCTCCTCAATCGAACACCAACTCCTGACACCACTTTGAAGCACTTGGTCAAAAGAGTTAGAGCTATAGAACAAGCTTGTCGTGATTGCTATGACGAAAAAATTGATATGAGTAGTCGCCGCATAATTAAGTTTCTGTCTGAGCTTACTCTCAAATTTTGTCAGTTGCACACCATGCGTTTTCTAAAGCCAAATGATGGAGCATCCGAAATCAGGCATTTACTTGACCACATAAGAATTGGTATAGTTGGACCAGAAAAGCTAACCATCAGTTCACGTCGTTATTTGGTTCCCTCTGTGACAGAACTCCGGCAAATTGGAGTCATATTTAAACGTGGAGACATGTCTTGCCACACACTCAACATACCCTTCCACAATGGAGTGATGGAGATTCCGGAAATATGTATTGGCAATAATCGATCTCTCTTTATCAACCTCATTGCCCTCGAAGAATGCCAACAAGGCCTCATAGGTTATGCATTTACCTCTTATGCCAGGGTCTTGCATTATATTATTAAATCTAGCATAGATGCGGAATTTCTCATGCAGAAAGGAATTATACATACCACTTCGAGCAAGGAGGACATCACCTGTCTCTTCAATAGCATTCATGATAACGCAACACCTACCTCTGAATCTGTTGTAATTCCCACCAGGAATGTGCATTTGTATTGTAAGCGCCGTTGGCTCAGGAGATGCCTTATAAGTATCAAACAGGATTATCTATACAATCCATCTTCAGTCTGGTCCCTTTCTAACGCGGTCATCATTATTACCTGCTGCAACTTGGAGTCGGATTTAAATCTAGAGAGTTCTTGCAATCTGCTCAACATAACCTTCCGCGATGGAGTGATAGAGATTCCTCAGATTTTTGTTCACAAAAATGAATCTCTTTTTCTAAACCTCATTGCCCTTGAACAATGTGAACAAGGGCGCATTGGATATGATTTTGCCTCATATGCCAGGGTCCTGCATTACCTTATTAAGTCAAGTAAAGATGCAGACTTTCTCATGCAGAAGGGAATCATAAAAACCAGATTGAGCAAGGAGGACATAGCTCGTCTCTTCACTGGTGTCTGCAATAACACTACATTTGCTTCCGATTCTTTCTCTGATCTCTCCCGGGAACAAATTGGAGTCAAATTTAAAACCGGAGACATTTCTTGCAAAGTGATCGACATATCTTTCTGGGATGGGGTGATGGAGATTCCAAGAATACGTATTTACAGTAAGCAATCTCTCTTCACAAACCTCATCGCCCTTGAACAGTGTAAACAAGGGCGCATTGGATATGACTTTACCTCTTATGCCAAGACCTTGCATTACCTTATTAAGTCTAGCAAAGATGTGGACTTTCTCATGCAGAATGGAATTATAAGTACAAATTTGAGCGAGGACATAGCATGCCCTTCAACAGTGTTTGCAGTAATTACACCACAGCCACCTCTGAGTCTTTTGATAAACTTACCAGGGAAGTGCATTCATATTCTAAGCATCACTGGCTACAGAGACGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

613

Amino Acids

69.8

Weight (kDa)

7.21

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 63 - 150 9.3e-19 Plant protein of unknown function
DUF247 PF03140 156 - 368 9.4e-33 Plant protein of unknown function
DUF247 PF03140 380 - 478 8.1e-22 Plant protein of unknown function
DUF247 PF03140 485 - 574 3.5e-20 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1028, 1700
Acc36I ACCTGC 2 cut(s) 294, 1109
AccB7I CCANNNNNTGG 1 cut(s) 521
AccII CGCG 2 cut(s) 1085, 1167
AccIII TCCGGA 1 cut(s) 718
AciI CCGC 4 cut(s) 445, 857, 1085, 1165
AcsI RAATTY 7 cut(s) 64, 96, 195, 479, 860, 1466, 1708
AcuI CTGAAG 2 cut(s) 194, 1047
AfaI GTAC 1 cut(s) 1705
AfiI CCNNNNNNNGG 2 cut(s) 521, 537
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 6 cut(s) 44, 364, 925, 1241, 1589, 1737
AjiI CACGTC 1 cut(s) 602
AjnI CCWGG 5 cut(s) 35, 818, 977, 1286, 1792
AjuI GAANNNNNNNTTGG 2 cut(s) 714, 746
AloI GAACNNNNNNTCC 2 cut(s) 331, 363
AluBI AGCT 6 cut(s) 227, 389, 401, 469, 586, 1382
AluI AGCT 6 cut(s) 227, 389, 401, 469, 586, 1382
Alw26I GTCTC 6 cut(s) 99, 657, 923, 1391, 1473, 1827
Ama87I CYCGRG 1 cut(s) 1446
Aor13HI TCCGGA 1 cut(s) 718
AoxI GGCC 2 cut(s) 260, 787
ApeKI GCWGC 1 cut(s) 1104
ApoI RAATTY 7 cut(s) 64, 96, 195, 479, 860, 1466, 1708
AspLEI GCGC 3 cut(s) 1005, 1260, 1608
AspS9I GGNCC 5 cut(s) 215, 260, 575, 1071, 1291
AsuC2I CCSGG 2 cut(s) 1447, 1448
AsuHPI GGTGA 2 cut(s) 904, 1534
AvaI CYCGRG 1 cut(s) 1446
AvaII GGWCC 4 cut(s) 215, 575, 1071, 1291
BbsI GAAGAC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 1091
BccI CCATC 8 cut(s) 181, 515, 599, 703, 1066, 1163, 1511, 1519
BceAI ACGGC 1 cut(s) 990
BcgI CGANNNNNNTGC 2 cut(s) 1480, 1514
BciT130I CCWGG 5 cut(s) 37, 820, 979, 1288, 1794
BcnI CCSGG 2 cut(s) 1447, 1448
BcoDI GTCTC 6 cut(s) 99, 657, 923, 1391, 1473, 1827
BfaI CTAG 3 cut(s) 846, 1130, 1662
BfmI CTRYAG 2 cut(s) 390, 1828
BfoI RGCGCY 1 cut(s) 1006
BfuAI ACCTGC 2 cut(s) 294, 1109
BglI GCCNNNNNGGC 1 cut(s) 786
BisI GCNGC 2 cut(s) 445, 1105
BlsI GCNGC 2 cut(s) 446, 1106
Bme1390I CCNGG 7 cut(s) 37, 820, 979, 1288, 1447, 1448, 1794
Bme18I GGWCC 4 cut(s) 215, 575, 1071, 1291
BmeT110I CYCGRG 1 cut(s) 1446
BmgBI CACGTC 1 cut(s) 602
BmgT120I GGNCC 5 cut(s) 215, 260, 575, 1071, 1291
BmiI GGNNCC 4 cut(s) 216, 615, 1073, 1292
BmrFI CCNGG 7 cut(s) 37, 820, 979, 1288, 1447, 1448, 1794
BmsI GCATC 7 cut(s) 146, 195, 536, 844, 1010, 1312, 1827
BpiI GAAGAC 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 1013
BpuMI CCSGG 2 cut(s) 1447, 1448
Bsa29I ATCGAT 2 cut(s) 143, 742
BsaAI YACGTR 1 cut(s) 1544
BsaBI GATNNNNATC 1 cut(s) 1125
BsaJI CCNNGG 6 cut(s) 271, 294, 819, 1287, 1446, 1793
BsaWI WCCGGW 2 cut(s) 718, 1475
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 521, 537
Bse1I ACTGG 2 cut(s) 1399, 1828
Bse3DI GCAATG 3 cut(s) 322, 762, 1230
Bse8I GATNNNNATC 1 cut(s) 1125
BseAI TCCGGA 1 cut(s) 718
BseBI CCWGG 5 cut(s) 37, 820, 979, 1288, 1794
BseCI ATCGAT 2 cut(s) 143, 742
BseDI CCNNGG 6 cut(s) 271, 294, 819, 1287, 1446, 1793
BseGI GGATG 2 cut(s) 527, 1522
BseJI GATNNNNATC 1 cut(s) 1125
BseLI CCNNNNNNNGG 2 cut(s) 521, 537
BseMI GCAATG 3 cut(s) 322, 762, 1230
BseMII CTCAG 5 cut(s) 219, 456, 1027, 1202, 1763
BseNI ACTGG 2 cut(s) 1399, 1828
BseRI GAGGAG 2 cut(s) 104, 320
BseXI GCAGC 1 cut(s) 1091
Bsh1236I CGCG 2 cut(s) 1085, 1167
BshFI GGCC 2 cut(s) 262, 789
BshVI ATCGAT 2 cut(s) 143, 742
BsiHKCI CYCGRG 1 cut(s) 1446
BsiSI CCGG 4 cut(s) 634, 719, 1447, 1476
BslFI GGGAC 1 cut(s) 1057
BslI CCNNNNNNNGG 2 cut(s) 521, 537
BsmAI GTCTC 6 cut(s) 99, 657, 923, 1391, 1473, 1827
BsmBI CGTCTC 2 cut(s) 1391, 1827
BsmFI GGGAC 1 cut(s) 1057
BsmI GAATGC 3 cut(s) 782, 930, 1803
BsnI GGCC 2 cut(s) 262, 789
BsoBI CYCGRG 1 cut(s) 1446
Bsp13I TCCGGA 1 cut(s) 718
Bsp143I GATC 3 cut(s) 743, 1438, 1497
Bsp19I CCATGG 2 cut(s) 271, 294
BspACI CCGC 4 cut(s) 445, 857, 1085, 1165
BspANI GGCC 2 cut(s) 262, 789
BspCNI CTCAG 5 cut(s) 220, 457, 1026, 1201, 1764
BspDI ATCGAT 2 cut(s) 143, 742
BspEI TCCGGA 1 cut(s) 718
BspFNI CGCG 2 cut(s) 1085, 1167
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 4 cut(s) 216, 615, 1073, 1292
BspMI ACCTGC 2 cut(s) 294, 1109
BsrDI GCAATG 3 cut(s) 322, 762, 1230
BsrI ACTGG 2 cut(s) 1399, 1828
BssECI CCNNGG 6 cut(s) 271, 294, 819, 1287, 1446, 1793
BssMI GATC 3 cut(s) 743, 1438, 1497
BssT1I CCWWGG 2 cut(s) 271, 294
Bst2UI CCWGG 5 cut(s) 37, 820, 979, 1288, 1794
Bst4CI ACNGT 3 cut(s) 1553, 1593, 1741
Bst6I CTCTTC 3 cut(s) 926, 1394, 1571
BstAPI GCANNNNNTGC 1 cut(s) 499
BstBAI YACGTR 1 cut(s) 1544
BstC8I GCNNGC 1 cut(s) 1729
BstDEI CTNAG 6 cut(s) 228, 465, 1013, 1188, 1772, 1814
BstDSI CCRYGG 2 cut(s) 271, 294
BstF5I GGATG 2 cut(s) 527, 1522
BstFNI CGCG 2 cut(s) 1085, 1167
BstH2I RGCGCY 1 cut(s) 1006
BstHHI GCGC 3 cut(s) 1005, 1260, 1608
BstKTI GATC 3 cut(s) 746, 1441, 1500
BstMAI GTCTC 6 cut(s) 99, 657, 923, 1391, 1473, 1827
BstMBI GATC 3 cut(s) 743, 1438, 1497
BstMWI GCNNNNNNNGC 5 cut(s) 499, 786, 1009, 1283, 1824
BstNI CCWGG 5 cut(s) 37, 820, 979, 1288, 1794
BstNSI RCATGY 2 cut(s) 670, 1731
BstSCI CCNGG 7 cut(s) 35, 818, 977, 1286, 1445, 1446, 1792
BstSFI CTRYAG 2 cut(s) 390, 1828
BstSNI TACGTA 1 cut(s) 1544
BstUI CGCG 2 cut(s) 1085, 1167
BstV1I GCAGC 1 cut(s) 1091
BstV2I GAAGAC 1 cut(s) 129
Bsu15I ATCGAT 2 cut(s) 143, 742
BsuRI GGCC 2 cut(s) 262, 789
BsuTUI ATCGAT 2 cut(s) 143, 742
BtgI CCRYGG 2 cut(s) 271, 294
BtgZI GCGATG 2 cut(s) 1182, 1564
BtrI CACGTC 1 cut(s) 602
BtsCI GGATG 2 cut(s) 527, 1522
BtsIMutI CAGTG 4 cut(s) 1392, 1598, 1746, 1821
BveI ACCTGC 2 cut(s) 294, 1109
Cac8I GCNNGC 1 cut(s) 1729
CciI TCATGA 1 cut(s) 934
CfoI GCGC 3 cut(s) 1005, 1260, 1608
Cfr13I GGNCC 5 cut(s) 215, 260, 575, 1071, 1291
Cfr9I CCCGGG 1 cut(s) 1446
ClaI ATCGAT 2 cut(s) 143, 742
Csp6I GTAC 1 cut(s) 1704
CviQI GTAC 1 cut(s) 1704
DdeI CTNAG 6 cut(s) 228, 465, 1013, 1188, 1772, 1814
DpnI GATC 3 cut(s) 745, 1440, 1499
DpnII GATC 3 cut(s) 743, 1438, 1497
DraI TTTAAA 4 cut(s) 193, 655, 1125, 1471
Eam1104I CTCTTC 3 cut(s) 926, 1394, 1571
EarI CTCTTC 3 cut(s) 926, 1394, 1571
Eco105I TACGTA 1 cut(s) 1544
Eco130I CCWWGG 2 cut(s) 271, 294
Eco147I AGGCCT 1 cut(s) 789
Eco47I GGWCC 4 cut(s) 215, 575, 1071, 1291
Eco57I CTGAAG 2 cut(s) 194, 1047
Eco88I CYCGRG 1 cut(s) 1446
EcoO109I RGGNCCY 2 cut(s) 215, 1291
EcoRII CCWGG 5 cut(s) 35, 818, 977, 1286, 1792
EcoT14I CCWWGG 2 cut(s) 271, 294
EcoT22I ATGCAT 1 cut(s) 805
ErhI CCWWGG 2 cut(s) 271, 294
Esp3I CGTCTC 2 cut(s) 1391, 1827
FaqI GGGAC 1 cut(s) 1057
FauNDI CATATG 1 cut(s) 1282
Fnu4HI GCNGC 2 cut(s) 445, 1105
FokI GGATG 2 cut(s) 514, 1529
Fsp4HI GCNGC 2 cut(s) 445, 1105
FspBI CTAG 3 cut(s) 846, 1130, 1662
GlaI GCGC 3 cut(s) 1004, 1259, 1607
GluI GCNGC 2 cut(s) 445, 1105
HaeII RGCGCY 1 cut(s) 1006
HaeIII GGCC 2 cut(s) 262, 789
HapII CCGG 4 cut(s) 634, 719, 1447, 1476
HhaI GCGC 3 cut(s) 1005, 1260, 1608
Hin6I GCGC 3 cut(s) 1003, 1258, 1606
HinP1I GCGC 3 cut(s) 1003, 1258, 1606
HindIII AAGCTT 1 cut(s) 399
HpaII CCGG 4 cut(s) 634, 719, 1447, 1476
HphI GGTGA 2 cut(s) 904, 1534
Hpy166II GTNNAC 5 cut(s) 599, 1201, 1250, 1598, 1675
Hpy188I TCNGA 8 cut(s) 466, 532, 958, 1120, 1191, 1426, 1438, 1773
Hpy188III TCNNGA 6 cut(s) 350, 407, 719, 935, 1015, 1130
Hpy8I GTNNAC 5 cut(s) 599, 1201, 1250, 1598, 1675
Hpy99I CGWCG 1 cut(s) 606
HpyAV CCTTC 5 cut(s) 53, 703, 1171, 1336, 1743
HpyCH4III ACNGT 3 cut(s) 1553, 1593, 1741
HpyCH4IV ACGT 3 cut(s) 601, 658, 1543
HpyF10VI GCNNNNNNNGC 5 cut(s) 499, 786, 1009, 1283, 1824
HpyF3I CTNAG 6 cut(s) 228, 465, 1013, 1188, 1772, 1814
HpySE526I ACGT 3 cut(s) 601, 658, 1543
HspAI GCGC 3 cut(s) 1003, 1258, 1606
Kpn2I TCCGGA 1 cut(s) 718
Kzo9I GATC 3 cut(s) 743, 1438, 1497
LmnI GCTCC 3 cut(s) 74, 91, 524
Lsp1109I GCAGC 1 cut(s) 1091
LweI GCATC 7 cut(s) 146, 195, 536, 844, 1010, 1312, 1827
MaeI CTAG 3 cut(s) 846, 1130, 1662
MaeII ACGT 3 cut(s) 601, 658, 1543
MaeIII GTNAC 2 cut(s) 14, 622
MalI GATC 3 cut(s) 745, 1440, 1499
MboI GATC 3 cut(s) 743, 1438, 1497
MboII GAAGA 8 cut(s) 65, 131, 134, 785, 913, 1053, 1381, 1558
MfeI CAATTG 1 cut(s) 255
MlyI GAGTC 4 cut(s) 654, 1124, 1470, 1783
MmeI TCCRAC 2 cut(s) 553, 1098
Mph1103I ATGCAT 1 cut(s) 805
MroI TCCGGA 1 cut(s) 718
MseI TTAA 8 cut(s) 192, 453, 654, 840, 1124, 1308, 1470, 1656
MslI CAYNNNNRTG 1 cut(s) 1206
MspI CCGG 4 cut(s) 634, 719, 1447, 1476
MspR9I CCNGG 7 cut(s) 37, 820, 979, 1288, 1447, 1448, 1794
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 3 cut(s) 782, 930, 1803
MvaI CCWGG 5 cut(s) 37, 820, 979, 1288, 1794
MvnI CGCG 2 cut(s) 1085, 1167
MwoI GCNNNNNNNGC 5 cut(s) 499, 786, 1009, 1283, 1824
NciI CCSGG 2 cut(s) 1447, 1448
NcoI CCATGG 2 cut(s) 271, 294
NdeI CATATG 1 cut(s) 1282
NdeII GATC 3 cut(s) 743, 1438, 1497
NlaIV GGNNCC 4 cut(s) 216, 615, 1073, 1292
NmuCI GTSAC 1 cut(s) 622
NsiI ATGCAT 1 cut(s) 805
NspI RCATGY 2 cut(s) 670, 1731
PaeI GCATGC 1 cut(s) 1731
PagI TCATGA 1 cut(s) 934
PceI AGGCCT 1 cut(s) 789
PciI ACATGT 1 cut(s) 666
PctI GAATGC 3 cut(s) 782, 930, 1803
PfeI GAWTC 8 cut(s) 145, 715, 959, 1183, 1211, 1347, 1427, 1531
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 2 cut(s) 446, 1106
PleI GAGTC 4 cut(s) 653, 1123, 1469, 1782
PpsI GAGTC 4 cut(s) 653, 1123, 1469, 1782
Ppu21I YACGTR 1 cut(s) 1544
PpuMI RGGWCCY 2 cut(s) 215, 1291
PscI ACATGT 1 cut(s) 666
PsiI TTATAA 2 cut(s) 1028, 1700
Psp5II RGGWCCY 2 cut(s) 215, 1291
Psp6I CCWGG 5 cut(s) 35, 818, 977, 1286, 1792
PspGI CCWGG 5 cut(s) 35, 818, 977, 1286, 1792
PspN4I GGNNCC 4 cut(s) 216, 615, 1073, 1292
PspPI GGNCC 5 cut(s) 215, 260, 575, 1071, 1291
PspPPI RGGWCCY 2 cut(s) 215, 1291
RsaI GTAC 1 cut(s) 1705
RsaNI GTAC 1 cut(s) 1704
RseI CAYNNNNRTG 1 cut(s) 1206
SaqAI TTAA 8 cut(s) 192, 453, 654, 840, 1124, 1308, 1470, 1656
SatI GCNGC 2 cut(s) 445, 1105
Sau3AI GATC 3 cut(s) 743, 1438, 1497
Sau96I GGNCC 5 cut(s) 215, 260, 575, 1071, 1291
SchI GAGTC 4 cut(s) 654, 1124, 1470, 1783
ScrFI CCNGG 7 cut(s) 37, 820, 979, 1288, 1447, 1448, 1794
SfaNI GCATC 7 cut(s) 146, 195, 536, 844, 1010, 1312, 1827
SfcI CTRYAG 2 cut(s) 390, 1828
SinI GGWCC 4 cut(s) 215, 575, 1071, 1291
SmaI CCCGGG 1 cut(s) 1448
SmiI ATTTAAAT 1 cut(s) 1125
SmiMI CAYNNNNRTG 1 cut(s) 1206
SnaBI TACGTA 1 cut(s) 1544
SphI GCATGC 1 cut(s) 1731
SseBI AGGCCT 1 cut(s) 789
SsiI CCGC 4 cut(s) 445, 857, 1085, 1165
SspMI CTAG 3 cut(s) 846, 1130, 1662
StuI AGGCCT 1 cut(s) 789
StyD4I CCNGG 7 cut(s) 35, 818, 977, 1286, 1445, 1446, 1792
StyI CCWWGG 2 cut(s) 271, 294
SwaI ATTTAAAT 1 cut(s) 1125
TaaI ACNGT 3 cut(s) 1553, 1593, 1741
TaiI ACGT 3 cut(s) 604, 661, 1546
TaqI TCGA 7 cut(s) 143, 148, 337, 742, 771, 896, 1500
TatI WGTACW 1 cut(s) 1703
TauI GCSGC 1 cut(s) 447
TfiI GAWTC 8 cut(s) 145, 715, 959, 1183, 1211, 1347, 1427, 1531
Tru1I TTAA 8 cut(s) 192, 453, 654, 840, 1124, 1308, 1470, 1656
Tru9I TTAA 8 cut(s) 192, 453, 654, 840, 1124, 1308, 1470, 1656
TscAI CASTG 4 cut(s) 1399, 1598, 1746, 1828
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 1 cut(s) 1104
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 6 cut(s) 72, 132, 237, 923, 1224, 1796
TspMI CCCGGG 1 cut(s) 1446
TspRI CASTG 4 cut(s) 1399, 1598, 1746, 1828
Van91I CCANNNNNTGG 1 cut(s) 521
VpaK11BI GGWCC 4 cut(s) 215, 575, 1071, 1291
XapI RAATTY 7 cut(s) 64, 96, 195, 479, 860, 1466, 1708
XbaI TCTAGA 1 cut(s) 1129
XceI RCATGY 2 cut(s) 670, 1731
XcmI CCANNNNNNNNNTGG 2 cut(s) 560, 1065
XmaI CCCGGG 1 cut(s) 1446
XspI CTAG 3 cut(s) 846, 1130, 1662
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.