Rh2DG592200

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000351
Physical Location & Seq
Forward (+)
82466135 .. 82467417
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG592200.1

Sequence Viewer

Length: 1083 bp
ATGGAGAGAATAAAATTATGCTACTTGCATTGCCTCCTCAATCGAACACCAACTCCTGACACCACTTTGAAGCACTTGGTCAAAAGAGTTAGAGCTATAGAACAAGCTTGTCGTGATTGCTATGACGAAAAACTTGATATGAGTAGTCACCAGTTTGTAGAAATGATGGTGGTTGATGGTTGCTTTGTTATTGAGTTCATGCTCGGAAGGACATACAGCAAGATTCTTCGGAATGATCCTCTGTCCCAAAGTTCATGGATGCGCACTCCACTTGTATCAGATTTGTTTCTACTGGAAAACCAGTTGCCTTGGTTAGTTCTTGATTGTTTATTCCAATATCTTGTAAAAGAAAATGCTGACGATGAACCTGTTGGAAAGCATAAGTTTCTGTCTGAGCTTACTCTCAAGTTTTGTCAGTTGCACACCATGCGTTTTCTAAAGCCAAATGATGGAGCATCCGAAATCAGGCATTTACTTGACCACATAAGAATTGGTATAGTTGGACCAGAAAAGCTAACCATCAGTTCACGTCGTTATTTGGTTCCCTCTGTGACACAACTCCGGCAAATTGGAGTCATATTTAAACGTGGAGACATGTCTTGCCACACACTCAACATAGCCTTCCACAATGGAGTGATGGAGATTCCGGAAATATGTATTGGCAACAATCGATCTCTCTTTATCAACCTCATTGCCCTCGAAGAATGCCAACAAGGCCTCATAGGTTATGCATTTACCTCTTATGCCAGGGTCTTGCATTATATTATTAAATCTAGCAAAGATGCAGAATTTCTCATGCAGAAAGGAATTATACATACCACTTTGAGCAAGGAGGACATAACTTGTCTCTTCAATAGCATTCATGATAACGCAACACCGACCTCTGAATCTGTTGTAATTCTCACCAGGAATGTGCATTTGTATTGTAAGCGTCGTTGGCTCAGGAGATACCTTATAAGTATCAAACAGGATTATCTATACAATCCATCTTCAGTTTGGTCCCTTTCTAATGCGGTCATCATTATTGTAATTCTCGGCATCGCACAAACCATATACACTCTTCTCTCTTACTACAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

360

Amino Acids

41.64

Weight (kDa)

8.64

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 343 3.5e-75 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
Acc16I TGCGCA 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 449
AccIII TCCGGA 1 cut(s) 646
AciI CCGC 1 cut(s) 1013
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 788
AcuI CTGAAG 1 cut(s) 975
AfiI CCNNNNNNNGG 2 cut(s) 449, 465
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 2 cut(s) 70, 853
AjiI CACGTC 1 cut(s) 530
AjnI CCWGG 2 cut(s) 746, 905
AjuI GAANNNNNNNTTGG 2 cut(s) 642, 674
AloI GAACNNNNNNTCC 2 cut(s) 37, 69
AluBI AGCT 4 cut(s) 95, 107, 397, 514
AluI AGCT 4 cut(s) 95, 107, 397, 514
Alw26I GTCTC 2 cut(s) 585, 851
AlwI GGATC 1 cut(s) 230
Aor13HI TCCGGA 1 cut(s) 646
AoxI GGCC 1 cut(s) 715
ApoI RAATTY 1 cut(s) 788
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 2 cut(s) 503, 999
AsuHPI GGTGA 2 cut(s) 140, 895
AvaII GGWCC 2 cut(s) 503, 999
BccI CCATC 6 cut(s) 160, 170, 443, 527, 631, 994
BciT130I CCWGG 2 cut(s) 748, 907
BcoDI GTCTC 2 cut(s) 585, 851
BfaI CTAG 1 cut(s) 774
BfmI CTRYAG 1 cut(s) 96
BglI GCCNNNNNGGC 1 cut(s) 714
Bme1390I CCNGG 2 cut(s) 748, 907
Bme18I GGWCC 2 cut(s) 503, 999
BmgBI CACGTC 1 cut(s) 530
BmgT120I GGNCC 2 cut(s) 503, 999
BmiI GGNNCC 2 cut(s) 543, 1001
BmrFI CCNGG 2 cut(s) 748, 907
BmsI GCATC 4 cut(s) 249, 464, 772, 1047
Bpu10I CCTNAGC 1 cut(s) 941
BpuEI CTTGAG 1 cut(s) 389
Bsa29I ATCGAT 1 cut(s) 670
BsaJI CCNNGG 2 cut(s) 308, 747
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 465
Bse1I ACTGG 3 cut(s) 151, 297, 301
Bse3DI GCAATG 2 cut(s) 28, 690
BseAI TCCGGA 1 cut(s) 646
BseBI CCWGG 2 cut(s) 748, 907
BseCI ATCGAT 1 cut(s) 670
BseDI CCNNGG 2 cut(s) 308, 747
BseGI GGATG 2 cut(s) 264, 455
BseLI CCNNNNNNNGG 2 cut(s) 449, 465
BseMI GCAATG 2 cut(s) 28, 690
BseMII CTCAG 2 cut(s) 384, 955
BseNI ACTGG 3 cut(s) 151, 297, 301
BseRI GAGGAG 1 cut(s) 26
BshFI GGCC 1 cut(s) 717
BshVI ATCGAT 1 cut(s) 670
BsiSI CCGG 2 cut(s) 562, 647
BslFI GGGAC 2 cut(s) 229, 985
BslI CCNNNNNNNGG 2 cut(s) 449, 465
BsmAI GTCTC 2 cut(s) 585, 851
BsmFI GGGAC 2 cut(s) 229, 985
BsmI GAATGC 2 cut(s) 710, 858
BsnI GGCC 1 cut(s) 717
Bsp13I TCCGGA 1 cut(s) 646
Bsp143I GATC 2 cut(s) 235, 671
BspACI CCGC 1 cut(s) 1013
BspANI GGCC 1 cut(s) 717
BspCNI CTCAG 2 cut(s) 385, 954
BspDI ATCGAT 1 cut(s) 670
BspEI TCCGGA 1 cut(s) 646
BspHI TCATGA 1 cut(s) 862
BspLI GGNNCC 2 cut(s) 543, 1001
BspPI GGATC 1 cut(s) 230
BsrDI GCAATG 2 cut(s) 28, 690
BsrI ACTGG 3 cut(s) 151, 297, 301
BssECI CCNNGG 2 cut(s) 308, 747
BssMI GATC 2 cut(s) 235, 671
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 2 cut(s) 748, 907
Bst6I CTCTTC 2 cut(s) 854, 1065
BstAPI GCANNNNNTGC 1 cut(s) 427
BstDEI CTNAG 2 cut(s) 393, 941
BstF5I GGATG 2 cut(s) 264, 455
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 2 cut(s) 238, 674
BstMAI GTCTC 2 cut(s) 585, 851
BstMBI GATC 2 cut(s) 235, 671
BstMWI GCNNNNNNNGC 3 cut(s) 427, 714, 937
BstNI CCWGG 2 cut(s) 748, 907
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 2 cut(s) 746, 905
BstSFI CTRYAG 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 670
BsuRI GGCC 1 cut(s) 717
BsuTUI ATCGAT 1 cut(s) 670
BtgZI GCGATG 1 cut(s) 1024
BtrI CACGTC 1 cut(s) 530
BtsCI GGATG 2 cut(s) 264, 455
CciI TCATGA 1 cut(s) 862
CfoI GCGC 1 cut(s) 264
Cfr13I GGNCC 2 cut(s) 503, 999
ClaI ATCGAT 1 cut(s) 670
CseI GACGC 1 cut(s) 920
CviAII CATG 6 cut(s) 199, 255, 427, 595, 796, 863
CviJI RGCY 8 cut(s) 95, 107, 397, 442, 514, 620, 717, 940
CviKI_1 RGCY 8 cut(s) 95, 107, 397, 442, 514, 620, 717, 940
DdeI CTNAG 2 cut(s) 393, 941
DpnI GATC 2 cut(s) 237, 673
DpnII GATC 2 cut(s) 235, 671
DraI TTTAAA 1 cut(s) 583
Eam1104I CTCTTC 2 cut(s) 854, 1065
EarI CTCTTC 2 cut(s) 854, 1065
Eco130I CCWWGG 1 cut(s) 308
Eco147I AGGCCT 1 cut(s) 717
Eco47I GGWCC 2 cut(s) 503, 999
Eco57I CTGAAG 1 cut(s) 975
EcoRII CCWGG 2 cut(s) 746, 905
EcoT14I CCWWGG 1 cut(s) 308
EcoT22I ATGCAT 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 6 cut(s) 202, 258, 430, 598, 799, 866
FaqI GGGAC 2 cut(s) 229, 985
FatI CATG 6 cut(s) 198, 254, 426, 594, 795, 862
FokI GGATG 2 cut(s) 271, 442
FspAI RTGCGCAY 1 cut(s) 263
FspBI CTAG 1 cut(s) 774
FspI TGCGCA 1 cut(s) 263
GlaI GCGC 1 cut(s) 263
HaeIII GGCC 1 cut(s) 717
HapII CCGG 2 cut(s) 562, 647
HgaI GACGC 1 cut(s) 920
HhaI GCGC 1 cut(s) 264
Hin1II CATG 6 cut(s) 202, 258, 430, 598, 799, 866
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 4 cut(s) 223, 573, 643, 887
HpaII CCGG 2 cut(s) 562, 647
HphI GGTGA 2 cut(s) 140, 895
Hpy166II GTNNAC 1 cut(s) 527
Hpy188I TCNGA 6 cut(s) 206, 231, 280, 394, 460, 886
Hpy188III TCNNGA 6 cut(s) 56, 113, 320, 647, 863, 943
Hpy8I GTNNAC 1 cut(s) 527
Hpy99I CGWCG 2 cut(s) 534, 936
HpyAV CCTTC 2 cut(s) 201, 631
HpyCH4IV ACGT 2 cut(s) 529, 586
HpyCH4V TGCA 7 cut(s) 28, 421, 731, 757, 785, 799, 916
HpyF10VI GCNNNNNNNGC 3 cut(s) 427, 714, 937
HpyF3I CTNAG 2 cut(s) 393, 941
HpySE526I ACGT 2 cut(s) 529, 586
Hsp92II CATG 6 cut(s) 202, 258, 430, 598, 799, 866
HspAI GCGC 1 cut(s) 262
Kpn2I TCCGGA 1 cut(s) 646
Kzo9I GATC 2 cut(s) 235, 671
LmnI GCTCC 1 cut(s) 452
LweI GCATC 4 cut(s) 249, 464, 772, 1047
MaeI CTAG 1 cut(s) 774
MaeII ACGT 2 cut(s) 529, 586
MaeIII GTNAC 2 cut(s) 146, 550
MalI GATC 2 cut(s) 237, 673
MboI GATC 2 cut(s) 235, 671
MboII GAAGA 5 cut(s) 218, 713, 841, 981, 1052
MluCI AATT 7 cut(s) 14, 489, 567, 788, 807, 897, 1029
MlyI GAGTC 1 cut(s) 582
MmeI TCCRAC 2 cut(s) 352, 481
Mph1103I ATGCAT 1 cut(s) 733
MroI TCCGGA 1 cut(s) 646
MseI TTAA 2 cut(s) 582, 768
MspI CCGG 2 cut(s) 562, 647
MspR9I CCNGG 2 cut(s) 748, 907
Mva1269I GAATGC 2 cut(s) 710, 858
MvaI CCWGG 2 cut(s) 748, 907
MwoI GCNNNNNNNGC 3 cut(s) 427, 714, 937
NdeII GATC 2 cut(s) 235, 671
NlaIII CATG 6 cut(s) 202, 258, 430, 598, 799, 866
NlaIV GGNNCC 2 cut(s) 543, 1001
NmeAIII GCCGAG 1 cut(s) 1014
NmuCI GTSAC 2 cut(s) 146, 550
NsbI TGCGCA 1 cut(s) 263
NsiI ATGCAT 1 cut(s) 733
NspI RCATGY 1 cut(s) 598
PagI TCATGA 1 cut(s) 862
PceI AGGCCT 1 cut(s) 717
PciI ACATGT 1 cut(s) 594
PctI GAATGC 2 cut(s) 710, 858
PfeI GAWTC 3 cut(s) 223, 643, 887
PflMI CCANNNNNTGG 1 cut(s) 449
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
PscI ACATGT 1 cut(s) 594
PsiI TTATAA 1 cut(s) 956
Psp6I CCWGG 2 cut(s) 746, 905
PspGI CCWGG 2 cut(s) 746, 905
PspN4I GGNNCC 2 cut(s) 543, 1001
PspPI GGNCC 2 cut(s) 503, 999
SaqAI TTAA 2 cut(s) 582, 768
Sau3AI GATC 2 cut(s) 235, 671
Sau96I GGNCC 2 cut(s) 503, 999
SchI GAGTC 1 cut(s) 582
ScrFI CCNGG 2 cut(s) 748, 907
SfaNI GCATC 4 cut(s) 249, 464, 772, 1047
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 2 cut(s) 503, 999
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 7 cut(s) 14, 489, 567, 788, 807, 897, 1029
SseBI AGGCCT 1 cut(s) 717
SsiI CCGC 1 cut(s) 1013
SspMI CTAG 1 cut(s) 774
StuI AGGCCT 1 cut(s) 717
StyD4I CCNGG 2 cut(s) 746, 905
StyI CCWWGG 1 cut(s) 308
TaiI ACGT 2 cut(s) 532, 589
TaqI TCGA 3 cut(s) 43, 670, 699
TasI AATT 7 cut(s) 14, 489, 567, 788, 807, 897, 1029
TfiI GAWTC 3 cut(s) 223, 643, 887
Tru1I TTAA 2 cut(s) 582, 768
Tru9I TTAA 2 cut(s) 582, 768
TseFI GTSAC 2 cut(s) 146, 550
Tsp45I GTSAC 2 cut(s) 146, 550
TspDTI ATGAA 4 cut(s) 187, 243, 378, 851
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 2 cut(s) 503, 999
XapI RAATTY 1 cut(s) 788
XceI RCATGY 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 2 cut(s) 488, 993
XspI CTAG 1 cut(s) 774
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.