pycom17g24560

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000351
Physical Location & Seq
Forward (+)
22832405 .. 22833811
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g24560.1

Sequence Viewer

Length: 1407 bp
ATGACAGACTTAGCTGAGAGCAGCAATAGTGCAAATAGAGATCAGTCCGTAATTCAAGCAAGAGACGAGGGAGAGAGATGTGAGATGGAACTAAGTGGTGTGGGTAACCAAACTTTGAGCAGAAATGAAACAAATAAAGACGAATTATTAGCGTCCCTCATAGAGAAAAAGCTTCCCCAGGAATTTCCAGAAGCAGATCCTACTTGCATATTCATAGTCCCAAATAAACTTGGCAGGGACAGTGAAAATGCTTTTGTCCCACAAGTGGTTCCAATCGGGCCGTATCACCACGGAGGAAAAAAGTTCGAAGCCATGGAACAAATTAAGCTATGGAATTTGCAATGCCTCCTTAAACGCGAACCAACTCCAGACACCAGTTTGGTGAAGTTTGTCAAAGAAATTAGAAGCAGAGAAAAGTTTCTTCGTAACTGCTATGACGTAAAGTTGGGTAATCATCTGAGTAGCGATCAGTTTGTAGAAATGATGGTGGTCGATGGTTGCTTTCTGTTAGAGTTTATCCGCCGAAGTAATCCGATTTCCAGATATCGTGATGTTCTCAGTATGCCAGAGATGTTGTCGATGGTTAAAAACGACTTGTTCCTGCTTGAAAACCAGCTTCCGTGGAAAGTTGTCGACTGTTTATTCAACCTCACAACAACTTCAAAAGAGAATTCTCTACATTTTCTAACTTCGGTATTAATTGCCGAAGTTATGCATAATCGGACGATCCACAAGCACTCAATTCAGACATGGCAACTCAGACATTTACTTGACAATGCAAGAGATTTGCTTGTTGGATCATTTTCGAGGAATAGGGACAGTCTTTATAAACATTGGACTCCTATTCCCTCAGTGACACATCTTGAGGAGAGTGGAGTCAAATTTCAACCTGCATCCTCTAAGACAGAGCTGTTGGGCATAACCTTCGACTCGCAAAATGGAGTGATGGAAATTCCATTCATGAGAATTGGAGCCAACACAGAATGTGTCTTGAGAAACCTCATAGCCTACGAACGGTGTTCAAGGAAGCCCAATAACATTTTGTCTTATGCCACGCTGCTGAATCAGCTTATCAAGTCTACCGAGGATTTAGACTCTCTCTTTCAGAAAGGAATTGTAGTAACCTACTTGAGCAAGGAGGACACTGTTTCTTTGTTCAATAGGCTTTGCAATGACACTACATCCATCCCGATCGTTTACTCTCGACTCACCTTGGACGTGTATCGCTACAATCGAGATCGTTGGCTAAGGCGTTGGCTTGCAGGGATCAAAAGGGATTATCTATGCAATCCACAGTCAGTCCTGTCACTTTTCTCAAATGCGGTAATCCTTGGTCTCATTCTTACTGCCCTACAGGCCGTATATGGTGTTTTCGCCTACTACAAGCAGTCGAAACCTTCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

469

Amino Acids

53.73

Weight (kDa)

7.96

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 70 - 444 1.1e-92 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 828
Acc36I ACCTGC 1 cut(s) 898
AccI GTMKAC 2 cut(s) 633, 1079
AccII CGCG 1 cut(s) 357
AciI CCGC 2 cut(s) 520, 1322
AclWI GGATC 4 cut(s) 191, 721, 805, 1274
AcsI RAATTY 5 cut(s) 182, 334, 670, 881, 951
AfiI CCNNNNNNNGG 2 cut(s) 265, 1014
AflIII ACRYGT 1 cut(s) 1218
AgsI TTSAA 7 cut(s) 56, 608, 646, 663, 887, 1023, 1159
AjiI CACGTC 1 cut(s) 1219
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 6 cut(s) 14, 172, 328, 616, 910, 1069
AluI AGCT 6 cut(s) 14, 172, 328, 616, 910, 1069
Alw26I GTCTC 2 cut(s) 57, 1340
AlwI GGATC 4 cut(s) 191, 721, 805, 1274
AoxI GGCC 2 cut(s) 278, 1356
ApeKI GCWGC 2 cut(s) 21, 1057
ApoI RAATTY 5 cut(s) 182, 334, 670, 881, 951
AseI ATTAAT 1 cut(s) 698
Asp700I GAANNNNTTC 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 3 cut(s) 278, 394, 1201
AsuII TTCGAA 1 cut(s) 306
BbvI GCAGC 2 cut(s) 33, 1044
BccI CCATC 6 cut(s) 79, 478, 488, 574, 940, 1193
BceAI ACGGC 2 cut(s) 265, 1343
BcgI CGANNNNNNTGC 2 cut(s) 907, 941
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 57, 1340
BfmI CTRYAG 1 cut(s) 1352
BfuAI ACCTGC 1 cut(s) 898
BglI GCCNNNNNGGC 1 cut(s) 1355
BisI GCNGC 2 cut(s) 22, 1058
BlsI GCNGC 2 cut(s) 23, 1059
Bme1390I CCNGG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 1219
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 270, 973
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 902
BpmI CTGGAG 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 1247
Bpu14I TTCGAA 1 cut(s) 306
BpuEI CTTGAG 3 cut(s) 884, 1012, 1150
BsaI GGTCTC 1 cut(s) 1340
BsaJI CCNNGG 7 cut(s) 177, 289, 312, 620, 1083, 1212, 1330
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 1014
Bse1I ACTGG 1 cut(s) 375
Bse3DI GCAATG 2 cut(s) 347, 1177
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 7 cut(s) 177, 289, 312, 620, 1083, 1212, 1330
BseGI GGATG 3 cut(s) 893, 1181, 1185
BseLI CCNNNNNNNGG 2 cut(s) 265, 1014
BseMI GCAATG 2 cut(s) 347, 1177
BseMII CTCAG 5 cut(s) 6, 449, 571, 772, 864
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 1 cut(s) 881
BseXI GCAGC 2 cut(s) 33, 1044
Bsh1236I CGCG 1 cut(s) 357
Bsh1285I CGRYCG 1 cut(s) 1194
BshFI GGCC 2 cut(s) 280, 1358
BsiEI CGRYCG 1 cut(s) 1194
BslFI GGGAC 5 cut(s) 139, 203, 242, 251, 830
BslI CCNNNNNNNGG 2 cut(s) 265, 1014
BsmAI GTCTC 2 cut(s) 57, 1340
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 5 cut(s) 139, 203, 242, 251, 830
BsnI GGCC 2 cut(s) 280, 1358
Bso31I GGTCTC 1 cut(s) 1340
Bsp119I TTCGAA 1 cut(s) 306
Bsp143I GATC 8 cut(s) 40, 196, 466, 726, 797, 1191, 1237, 1266
Bsp19I CCATGG 1 cut(s) 312
BspACI CCGC 2 cut(s) 520, 1322
BspANI GGCC 2 cut(s) 280, 1358
BspCNI CTCAG 5 cut(s) 7, 450, 570, 771, 863
BspFNI CGCG 1 cut(s) 357
BspHI TCATGA 1 cut(s) 960
BspLI GGNNCC 2 cut(s) 270, 973
BspMI ACCTGC 1 cut(s) 898
BspPI GGATC 4 cut(s) 191, 721, 805, 1274
BspT104I TTCGAA 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 1340
BsrDI GCAATG 2 cut(s) 347, 1177
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 7 cut(s) 177, 289, 312, 620, 1083, 1212, 1330
BssMI GATC 8 cut(s) 40, 196, 466, 726, 797, 1191, 1237, 1266
BssT1I CCWWGG 3 cut(s) 312, 1212, 1330
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 6 cut(s) 242, 638, 821, 1017, 1147, 1296
BstBI TTCGAA 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 1260
BstDEI CTNAG 9 cut(s) 10, 15, 92, 458, 557, 758, 850, 900, 1247
BstDSI CCRYGG 3 cut(s) 289, 312, 620
BstEII GGTNACC 1 cut(s) 104
BstF5I GGATG 3 cut(s) 893, 1181, 1185
BstFNI CGCG 1 cut(s) 357
BstKTI GATC 8 cut(s) 43, 199, 469, 729, 800, 1194, 1240, 1269
BstMAI GTCTC 2 cut(s) 57, 1340
BstMBI GATC 8 cut(s) 40, 196, 466, 726, 797, 1191, 1237, 1266
BstMCI CGRYCG 1 cut(s) 1194
BstMWI GCNNNNNNNGC 2 cut(s) 1066, 1355
BstNI CCWGG 1 cut(s) 179
BstPI GGTNACC 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 1352
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 33, 1044
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 2 cut(s) 280, 1358
BtgI CCRYGG 3 cut(s) 289, 312, 620
BtrI CACGTC 1 cut(s) 1219
BtsCI GGATG 3 cut(s) 893, 1181, 1185
BtsIMutI CAGTG 3 cut(s) 247, 858, 1143
BveI ACCTGC 1 cut(s) 898
Cac8I GCNNGC 1 cut(s) 1260
CciI TCATGA 1 cut(s) 960
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 1 cut(s) 141
CviAII CATG 3 cut(s) 313, 750, 961
DdeI CTNAG 9 cut(s) 10, 15, 92, 458, 557, 758, 850, 900, 1247
DpnI GATC 8 cut(s) 42, 198, 468, 728, 799, 1193, 1239, 1268
DpnII GATC 8 cut(s) 40, 196, 466, 726, 797, 1191, 1237, 1266
EciI GGCGGA 1 cut(s) 509
Eco130I CCWWGG 3 cut(s) 312, 1212, 1330
Eco31I GGTCTC 1 cut(s) 1340
Eco32I GATATC 1 cut(s) 545
Eco91I GGTNACC 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 670
EcoRII CCWGG 1 cut(s) 177
EcoRV GATATC 1 cut(s) 545
EcoT14I CCWWGG 3 cut(s) 312, 1212, 1330
EcoT22I ATGCAT 1 cut(s) 717
ErhI CCWWGG 3 cut(s) 312, 1212, 1330
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 3 cut(s) 316, 753, 964
FaqI GGGAC 5 cut(s) 139, 203, 242, 251, 830
FatI CATG 3 cut(s) 312, 749, 960
FblI GTMKAC 2 cut(s) 633, 1079
Fnu4HI GCNGC 2 cut(s) 22, 1058
FokI GGATG 3 cut(s) 880, 1168, 1172
Fsp4HI GCNGC 2 cut(s) 22, 1058
GluI GCNGC 2 cut(s) 22, 1058
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 2 cut(s) 280, 1358
HgaI GACGC 1 cut(s) 141
Hin1II CATG 3 cut(s) 316, 753, 964
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 6 cut(s) 838, 876, 929, 1063, 1094, 1206
HphI GGTGA 3 cut(s) 278, 394, 1201
Hpy166II GTNNAC 3 cut(s) 634, 1080, 1198
Hpy188I TCNGA 6 cut(s) 459, 534, 723, 747, 761, 1107
Hpy8I GTNNAC 3 cut(s) 634, 1080, 1198
HpyAV CCTTC 2 cut(s) 934, 1407
HpyCH4III ACNGT 6 cut(s) 242, 638, 821, 1017, 1147, 1296
HpyCH4IV ACGT 2 cut(s) 438, 1218
HpyCH4V TGCA 9 cut(s) 32, 207, 340, 715, 779, 893, 1170, 1262, 1287
HpyF10VI GCNNNNNNNGC 2 cut(s) 1066, 1355
HpyF3I CTNAG 9 cut(s) 10, 15, 92, 458, 557, 758, 850, 900, 1247
HpySE526I ACGT 2 cut(s) 438, 1218
Hsp92II CATG 3 cut(s) 316, 753, 964
Kzo9I GATC 8 cut(s) 40, 196, 466, 726, 797, 1191, 1237, 1266
LmnI GCTCC 1 cut(s) 971
Lsp1109I GCAGC 2 cut(s) 33, 1044
LweI GCATC 1 cut(s) 902
MaeII ACGT 2 cut(s) 438, 1218
MaeIII GTNAC 5 cut(s) 104, 425, 853, 1120, 1305
MalI GATC 8 cut(s) 42, 198, 468, 728, 799, 1193, 1239, 1268
MboI GATC 8 cut(s) 40, 196, 466, 726, 797, 1191, 1237, 1266
MboII GAAGA 1 cut(s) 413
MfeI CAATTG 1 cut(s) 1402
MflI RGATCY 1 cut(s) 196
MlyI GAGTC 5 cut(s) 832, 885, 923, 1088, 1200
MmeI TCCRAC 1 cut(s) 775
Mph1103I ATGCAT 1 cut(s) 717
MroXI GAANNNNTTC 1 cut(s) 417
MseI TTAA 4 cut(s) 324, 351, 585, 698
MspR9I CCNGG 1 cut(s) 179
MunI CAATTG 1 cut(s) 1402
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 2 cut(s) 1066, 1355
NcoI CCATGG 1 cut(s) 312
NdeII GATC 8 cut(s) 40, 196, 466, 726, 797, 1191, 1237, 1266
NlaIII CATG 3 cut(s) 316, 753, 964
NlaIV GGNNCC 2 cut(s) 270, 973
NmuCI GTSAC 2 cut(s) 853, 1305
NsiI ATGCAT 1 cut(s) 717
NspV TTCGAA 1 cut(s) 306
PagI TCATGA 1 cut(s) 960
PcsI WCGNNNNNNNCGW 1 cut(s) 1231
PdmI GAANNNNTTC 1 cut(s) 417
PfeI GAWTC 1 cut(s) 1063
PkrI GCNGC 2 cut(s) 23, 1059
Ple19I CGATCG 1 cut(s) 1194
PleI GAGTC 5 cut(s) 832, 884, 923, 1088, 1200
PpsI GAGTC 5 cut(s) 832, 884, 923, 1088, 1200
PshBI ATTAAT 1 cut(s) 698
PsiI TTATAA 1 cut(s) 828
Psp6I CCWGG 1 cut(s) 177
PspEI GGTNACC 1 cut(s) 104
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 270, 973
PspPI GGNCC 1 cut(s) 278
PsuI RGATCY 1 cut(s) 196
PvuI CGATCG 1 cut(s) 1194
SalI GTCGAC 1 cut(s) 632
SaqAI TTAA 4 cut(s) 324, 351, 585, 698
SatI GCNGC 2 cut(s) 22, 1058
Sau3AI GATC 8 cut(s) 40, 196, 466, 726, 797, 1191, 1237, 1266
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 5 cut(s) 832, 885, 923, 1088, 1200
ScrFI CCNGG 1 cut(s) 179
SfaNI GCATC 1 cut(s) 902
SfcI CTRYAG 1 cut(s) 1352
SfuI TTCGAA 1 cut(s) 306
SmlI CTYRAG 3 cut(s) 863, 991, 1129
SmoI CTYRAG 3 cut(s) 863, 991, 1129
SsiI CCGC 2 cut(s) 520, 1322
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 3 cut(s) 312, 1212, 1330
TaaI ACNGT 6 cut(s) 242, 638, 821, 1017, 1147, 1296
TaiI ACGT 2 cut(s) 441, 1221
TaqI TCGA 9 cut(s) 306, 492, 578, 633, 806, 927, 1204, 1234, 1391
TfiI GAWTC 1 cut(s) 1063
Tru1I TTAA 4 cut(s) 324, 351, 585, 698
Tru9I TTAA 4 cut(s) 324, 351, 585, 698
TscAI CASTG 3 cut(s) 247, 858, 1150
TseFI GTSAC 2 cut(s) 853, 1305
TseI GCWGC 2 cut(s) 21, 1057
Tsp45I GTSAC 2 cut(s) 853, 1305
TspDTI ATGAA 3 cut(s) 141, 202, 949
TspGWI ACGGA 3 cut(s) 37, 306, 609
TspRI CASTG 3 cut(s) 247, 858, 1150
VspI ATTAAT 1 cut(s) 698
XapI RAATTY 5 cut(s) 182, 334, 670, 881, 951
XmiI GTMKAC 2 cut(s) 633, 1079
XmnI GAANNNNTTC 1 cut(s) 417
Zsp2I ATGCAT 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.