Prupe.3G141900_v2.0.a1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000351
Physical Location & Seq
Forward (+)
15326218 .. 15328345
2128 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G141900.1

Sequence Viewer

Length: 1158 bp
ATGGAAAATGATGATAATAATGAAAATAGAGATGAAGATGAATTGTTGTCATCCTCGATTCAAGAAAAGGTTAACCATGCCTCGGATCCATTTTCAGTTCATCGTTGCATATATAGGATCCCTGGTGTACTAAGCAAGCATAAGGAAAAAGCTTTCGTTCCAATCGTAGTTTCAATTGGGCCAAGTCACCATGGAAACGAAAACCTTCAAGCCATGGAAGAAGTTAAGCTATGGTACTTGCATTGCCTCCTTGACCGAAAACCAACTCCCGAAACGGATATGGAGTCTCTTGTCAAAGCCATTAGACCTATACAACAAGCATGTCAAGAGTGTTATGAAGAAAAAATTCATATCAGCAATGACGAATTTCTTGAAATGATGGTGATTGATGGTTGCTTTATTAGCGAATTCTTTCTCAGGTTTGCCAACGAGGTGAACGTCGACAACGAAGATGGTCTCTTTTCTACATCATGGATGCTTTTAGCAGTCATAAATGATCTGCTTCTACTTGAAAACCAACTTCCTTGGAGAGTTCTTGATTGTTTATTTGAGCTCACATGTGAATCGGGAACGTCTTCCCTACTAGGGCTTATTAACAGTACTTTCAAGGCCTACACTGGGGGGCTATCTGCAAAGCCTAGTGGAACAGCGAAACACAGGCATTTACTTGACTTCATACGAAACTCTTTCCTTGGATCATACCCAGAAAGCCAGTCGGATGAAAGCACGAGAGATTCAGAAGCAATTCAAATGTTGGGCACCTCCTTGTTCCTTAATAGGAACGCCACAACACATGTGGGTACATATCAAAACTGTGGCTCCGCCCCTGTGCTCAACATAACCTTCGAAAACGGAGTAATGGAAATTCCACCAATAATAGTGTTTGATGAGAATAGGGAATCTCTCTTTGGAAACCTCATTGTTTATGAACAATATGTAGACTTTTTGGTTGAGAAAGGAATCATAGCAAAGATTTGGAGCAGGAAGGAGATGTTGGGTTTCTTCAAGAGGCTTTACAATGACACTAGACTTTATAAATATTTCTCTTACGATGAACTCCAGAAGGAAGTGAATGCATATTGTGTGGGTGGCTGGCGCAAATGGAAACAGATTCTCCGACGTGATTGTTTAAAGAATCCTTGCTCAAGCTCGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

386

Amino Acids

44.15

Weight (kDa)

5.09

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1035
AccB1I GGYRCC 1 cut(s) 758
AccI GTMKAC 2 cut(s) 441, 939
AciI CCGC 1 cut(s) 822
AclWI GGATC 5 cut(s) 80, 93, 112, 125, 703
AcsI RAATTY 4 cut(s) 345, 365, 407, 864
AfaI GTAC 4 cut(s) 129, 236, 601, 802
AfiI CCNNNNNNNGG 3 cut(s) 82, 585, 618
AflIII ACRYGT 2 cut(s) 557, 793
AgsI TTSAA 8 cut(s) 62, 174, 209, 374, 512, 607, 749, 1006
AjiI CACGTC 1 cut(s) 1121
AjnI CCWGG 1 cut(s) 121
AjuI GAANNNNNNNTTGG 6 cut(s) 154, 186, 891, 923, 977, 1009
AluBI AGCT 4 cut(s) 152, 229, 553, 1149
AluI AGCT 4 cut(s) 152, 229, 553, 1149
Alw21I GWGCWC 2 cut(s) 555, 834
Alw26I GTCTC 2 cut(s) 291, 461
AlwI GGATC 5 cut(s) 80, 93, 112, 125, 703
AoxI GGCC 2 cut(s) 179, 609
ApoI RAATTY 4 cut(s) 345, 365, 407, 864
Asp700I GAANNNNTTC 5 cut(s) 204, 345, 411, 574, 744
AspLEI GCGC 1 cut(s) 1098
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 3 cut(s) 179, 394, 445
AsuII TTCGAA 1 cut(s) 846
BaeGI GKGCMC 1 cut(s) 761
BamHI GGATCC 2 cut(s) 85, 117
BanI GGYRCC 1 cut(s) 758
BanII GRGCYC 1 cut(s) 555
BauI CACGAG 1 cut(s) 727
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 2 cut(s) 555, 834
BccI CCATC 3 cut(s) 373, 383, 446
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 2 cut(s) 291, 461
BfaI CTAG 3 cut(s) 584, 639, 1026
BmcAI AGTACT 1 cut(s) 601
Bme1390I CCNGG 1 cut(s) 123
BmgBI CACGTC 1 cut(s) 1121
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 4 cut(s) 87, 119, 760, 820
BmrFI CCNGG 1 cut(s) 123
BmrI ACTGGG 1 cut(s) 627
BmsI GCATC 1 cut(s) 465
BmuI ACTGGG 1 cut(s) 627
BpiI GAAGAC 1 cut(s) 567
BpmI CTGGAG 1 cut(s) 1043
Bpu14I TTCGAA 1 cut(s) 846
BpuEI CTTGAG 1 cut(s) 1129
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 6 cut(s) 81, 121, 190, 213, 524, 691
BsaXI ACNNNNNCTCC 4 cut(s) 803, 833, 1098, 1128
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 585, 618
Bse1I ACTGG 2 cut(s) 622, 712
Bse3DI GCAATG 2 cut(s) 241, 364
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 6 cut(s) 81, 121, 190, 213, 524, 691
BseGI GGATG 3 cut(s) 50, 480, 724
BseLI CCNNNNNNNGG 3 cut(s) 82, 585, 618
BseMI GCAATG 2 cut(s) 241, 364
BseMII CTCAG 1 cut(s) 430
BseNI ACTGG 2 cut(s) 622, 712
BseSI GKGCMC 1 cut(s) 761
BshFI GGCC 2 cut(s) 181, 611
BshNI GGYRCC 1 cut(s) 758
BsiHKAI GWGCWC 2 cut(s) 555, 834
BslI CCNNNNNNNGG 3 cut(s) 82, 585, 618
BsmAI GTCTC 2 cut(s) 291, 461
BsmI GAATGC 1 cut(s) 1078
BsnI GGCC 2 cut(s) 181, 611
Bso31I GGTCTC 1 cut(s) 461
Bsp119I TTCGAA 1 cut(s) 846
Bsp1286I GDGCHC 3 cut(s) 555, 761, 834
Bsp143I GATC 4 cut(s) 85, 117, 496, 695
Bsp19I CCATGG 2 cut(s) 190, 213
BspACI CCGC 1 cut(s) 822
BspANI GGCC 2 cut(s) 181, 611
BspCNI CTCAG 1 cut(s) 429
BspLI GGNNCC 4 cut(s) 87, 119, 760, 820
BspPI GGATC 5 cut(s) 80, 93, 112, 125, 703
BspT104I TTCGAA 1 cut(s) 846
BspT107I GGYRCC 1 cut(s) 758
BspTNI GGTCTC 1 cut(s) 461
BsrDI GCAATG 2 cut(s) 241, 364
BsrI ACTGG 2 cut(s) 622, 712
BssECI CCNNGG 6 cut(s) 81, 121, 190, 213, 524, 691
BssMI GATC 4 cut(s) 85, 117, 496, 695
BssSI CACGAG 1 cut(s) 727
BssT1I CCWWGG 4 cut(s) 190, 213, 524, 691
Bst2BI CACGAG 1 cut(s) 727
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 599, 815
BstBI TTCGAA 1 cut(s) 846
BstC8I GCNNGC 2 cut(s) 137, 1094
BstDEI CTNAG 2 cut(s) 131, 416
BstDSI CCRYGG 2 cut(s) 190, 213
BstF5I GGATG 3 cut(s) 50, 480, 724
BstHHI GCGC 1 cut(s) 1098
BstKTI GATC 4 cut(s) 88, 120, 499, 698
BstMAI GTCTC 2 cut(s) 291, 461
BstMBI GATC 4 cut(s) 85, 117, 496, 695
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 3 cut(s) 324, 561, 797
BstSCI CCNGG 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 761
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 85, 117
BstYI RGATCY 2 cut(s) 85, 117
BsuRI GGCC 2 cut(s) 181, 611
BtgI CCRYGG 2 cut(s) 190, 213
BtrI CACGTC 1 cut(s) 1121
BtsCI GGATG 3 cut(s) 50, 480, 724
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 2 cut(s) 137, 1094
CfoI GCGC 1 cut(s) 1098
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 4 cut(s) 128, 235, 600, 801
CspCI CAANNNNNGTGG 2 cut(s) 777, 812
CviAII CATG 7 cut(s) 77, 191, 214, 321, 471, 558, 794
CviQI GTAC 4 cut(s) 128, 235, 600, 801
DdeI CTNAG 2 cut(s) 131, 416
DpnI GATC 4 cut(s) 87, 119, 498, 697
DpnII GATC 4 cut(s) 85, 117, 496, 695
DraI TTTAAA 1 cut(s) 1131
EciI GGCGGA 1 cut(s) 811
Ecl136II GAGCTC 1 cut(s) 553
Eco130I CCWWGG 4 cut(s) 190, 213, 524, 691
Eco147I AGGCCT 1 cut(s) 611
Eco24I GRGCYC 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 461
Eco53kI GAGCTC 1 cut(s) 553
EcoICRI GAGCTC 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 4 cut(s) 190, 213, 524, 691
EcoT22I ATGCAT 1 cut(s) 1078
EcoT38I GRGCYC 1 cut(s) 555
ErhI CCWWGG 4 cut(s) 190, 213, 524, 691
FaeI CATG 7 cut(s) 80, 194, 217, 324, 474, 561, 797
FalI AAGNNNNNCTT 1 cut(s) 1138
FatI CATG 7 cut(s) 76, 190, 213, 320, 470, 557, 793
FblI GTMKAC 2 cut(s) 441, 939
FokI GGATG 3 cut(s) 37, 487, 731
FriOI GRGCYC 1 cut(s) 555
FspBI CTAG 3 cut(s) 584, 639, 1026
GlaI GCGC 1 cut(s) 1097
GsuI CTGGAG 1 cut(s) 1043
HaeIII GGCC 2 cut(s) 181, 611
HhaI GCGC 1 cut(s) 1098
Hin1II CATG 7 cut(s) 80, 194, 217, 324, 474, 561, 797
Hin6I GCGC 1 cut(s) 1096
HinP1I GCGC 1 cut(s) 1096
HincII GTYRAC 2 cut(s) 73, 442
HindII GTYRAC 2 cut(s) 73, 442
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 8 cut(s) 58, 284, 563, 734, 899, 960, 1111, 1135
HpaI GTTAAC 1 cut(s) 73
HphI GGTGA 3 cut(s) 179, 394, 445
Hpy166II GTNNAC 5 cut(s) 73, 128, 436, 442, 940
Hpy188I TCNGA 4 cut(s) 85, 718, 739, 1118
Hpy188III TCNNGA 9 cut(s) 62, 269, 326, 371, 536, 567, 1006, 1060, 1155
Hpy8I GTNNAC 5 cut(s) 73, 128, 436, 442, 940
Hpy99I CGWCG 2 cut(s) 443, 1122
HpyAV CCTTC 4 cut(s) 215, 853, 979, 1057
HpyCH4III ACNGT 2 cut(s) 599, 815
HpyCH4IV ACGT 3 cut(s) 438, 572, 1120
HpyCH4V TGCA 4 cut(s) 108, 241, 632, 1076
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 2 cut(s) 131, 416
HpySE526I ACGT 3 cut(s) 438, 572, 1120
Hsp92II CATG 7 cut(s) 80, 194, 217, 324, 474, 561, 797
HspAI GCGC 1 cut(s) 1096
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 85, 117, 496, 695
LmnI GCTCC 2 cut(s) 824, 978
LweI GCATC 1 cut(s) 465
MaeI CTAG 3 cut(s) 584, 639, 1026
MaeII ACGT 3 cut(s) 438, 572, 1120
MaeIII GTNAC 1 cut(s) 185
MalI GATC 4 cut(s) 87, 119, 498, 697
MboI GATC 4 cut(s) 85, 117, 496, 695
MboII GAAGA 6 cut(s) 47, 230, 350, 461, 567, 994
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 2 cut(s) 85, 117
MhlI GDGCHC 3 cut(s) 555, 761, 834
MluCI AATT 7 cut(s) 41, 174, 345, 365, 407, 744, 864
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 2 cut(s) 696, 1141
MnlI CCTC 7 cut(s) 64, 91, 257, 424, 772, 926, 1002
Mph1103I ATGCAT 1 cut(s) 1078
MroXI GAANNNNTTC 5 cut(s) 204, 345, 411, 574, 744
MseI TTAA 5 cut(s) 72, 225, 594, 774, 1130
MspR9I CCNGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 1078
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 402
NcoI CCATGG 2 cut(s) 190, 213
NdeII GATC 4 cut(s) 85, 117, 496, 695
NlaIII CATG 7 cut(s) 80, 194, 217, 324, 474, 561, 797
NlaIV GGNNCC 4 cut(s) 87, 119, 760, 820
NmuCI GTSAC 1 cut(s) 185
NsiI ATGCAT 1 cut(s) 1078
NspI RCATGY 3 cut(s) 324, 561, 797
NspV TTCGAA 1 cut(s) 846
PceI AGGCCT 1 cut(s) 611
PciI ACATGT 2 cut(s) 557, 793
PcsI WCGNNNNNNNCGW 3 cut(s) 162, 435, 444
PctI GAATGC 1 cut(s) 1078
PdmI GAANNNNTTC 5 cut(s) 204, 345, 411, 574, 744
PfeI GAWTC 7 cut(s) 58, 563, 734, 899, 960, 1111, 1135
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PscI ACATGT 2 cut(s) 557, 793
PsiI TTATAA 1 cut(s) 1035
Psp124BI GAGCTC 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 4 cut(s) 87, 119, 760, 820
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 2 cut(s) 85, 117
RsaI GTAC 4 cut(s) 129, 236, 601, 802
RsaNI GTAC 4 cut(s) 128, 235, 600, 801
SacI GAGCTC 1 cut(s) 555
SalI GTCGAC 1 cut(s) 440
SaqAI TTAA 5 cut(s) 72, 225, 594, 774, 1130
Sau3AI GATC 4 cut(s) 85, 117, 496, 695
Sau96I GGNCC 1 cut(s) 179
ScaI AGTACT 1 cut(s) 601
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 3 cut(s) 555, 761, 834
SfaNI GCATC 1 cut(s) 465
SfuI TTCGAA 1 cut(s) 846
SmlI CTYRAG 1 cut(s) 1144
SmoI CTYRAG 1 cut(s) 1144
Sse9I AATT 7 cut(s) 41, 174, 345, 365, 407, 744, 864
SseBI AGGCCT 1 cut(s) 611
SsiI CCGC 1 cut(s) 822
SspI AATATT 1 cut(s) 1040
SspMI CTAG 3 cut(s) 584, 639, 1026
SstI GAGCTC 1 cut(s) 555
StuI AGGCCT 1 cut(s) 611
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 4 cut(s) 190, 213, 524, 691
TaaI ACNGT 2 cut(s) 599, 815
TaiI ACGT 3 cut(s) 441, 575, 1123
TaqI TCGA 3 cut(s) 56, 441, 846
TaqII GACCGA 1 cut(s) 270
TasI AATT 7 cut(s) 41, 174, 345, 365, 407, 744, 864
TatI WGTACW 2 cut(s) 127, 599
TfiI GAWTC 7 cut(s) 58, 563, 734, 899, 960, 1111, 1135
Tru1I TTAA 5 cut(s) 72, 225, 594, 774, 1130
Tru9I TTAA 5 cut(s) 72, 225, 594, 774, 1130
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspGWI ACGGA 2 cut(s) 290, 867
TspRI CASTG 1 cut(s) 622
XapI RAATTY 4 cut(s) 345, 365, 407, 864
XceI RCATGY 3 cut(s) 324, 561, 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 793
XmiI GTMKAC 2 cut(s) 441, 939
XmnI GAANNNNTTC 5 cut(s) 204, 345, 411, 574, 744
XspI CTAG 3 cut(s) 584, 639, 1026
ZrmI AGTACT 1 cut(s) 601
Zsp2I ATGCAT 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.