Rh5DG460600

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000351
Physical Location & Seq
Forward (+)
73162532 .. 73165260
2729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG460600.1

Sequence Viewer

Length: 1170 bp
ATGACAGAAAGTAGCATAAATGATCACTTGTTGATTGAAATCCGAAATGGAGGAGGATATGTCAATGTGAATAAGCAGACTCTAAGTGGAAATAGAATTGGAGACGAATTATTAGCATCCCAGATTGCAGATAAGTTGAGACTGCTGCCCCCATTACCAGTTCCTAGTTACATATTTAACATCCCTACTGTTCTGCGAAGTCAGGTTGAAAATAAGGATTTCGGTACTCCGGATTTGGTTTCAATTGGGCCATTTCACCATGGAAAAAAGAACCTGCAAGCCATGGAAGAAATCAAACTGCTGTATCTGCATTCTCTCCTTGATCGAAAGCCGACTCCACAGACCACCTTGGAGAACTTTGTCAGAGAAATCCGGAGTATGGAAGGAGATTGTGGTGATTGCTATGATGGAAAGATCAATGCGAGTAGTGATGACTTTGTGGAAGTGATGGTGGTTGATACTTGCTTTATCATTGAGCTGTTTCGAAAGTTTTCAGGAGAGGTGCTCAAAGAGGAGAATGATCCTGTGTTCTTTAGGTCATGGATGCGCACGGCTCTTATAAATGACTTGCTTCTACTTTCGAACCAGCTTCCTTGGAAAGTTCTCAGCCGTTTATCTGAGCTTACGCAGGAAACAGGTAAACACCATCTTCATGACCTTATTCACAAGTACTTCAAGGGCAACATATTTGGATTGTCTCCACAAGCCAATGGAGAACTTGAAAATAAACATGTACTAGACTTCTTAAGAAATTGCTTTCTTGGCTCATTTGAAACCGAAATGTCTGATTTTGAGGACTTGCCTTGGAGCACGATTCCCTCTGCTAACGAACTTTTAAATGCTGGAGTAAGGATTGCAGTTGGGCATGGAAATAGCATGCTCGACATCGATTTCCACGATGGGGTTCTGAAAATTCCGCCCATGCGAGTTCAGAAGTACGAAGTATCCTTCCTTAGAAACCTCATCGCATATGAACAGTGTGCACCAATTACAGGTGTAATCACCTCTTATGTTTCGTTGTTAGGTGACCTCATTAGGACAGAGAGAGATGTACAAATTCTCATGGATAACGGAATTATACAAGGCATCTCAAGTGAGGAGGGTAGAGCCTCCTTGTTCAATTGTCTGTGTGCTGACCTAATGCAGTTCCCCTTACACGGGACTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

389

Amino Acids

43.83

Weight (kDa)

5.14

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 58 - 380 2.2e-85 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
Acc16I TGCGCA 1 cut(s) 548
Acc36I ACCTGC 1 cut(s) 282
AccIII TCCGGA 2 cut(s) 229, 372
AciI CCGC 1 cut(s) 917
AclWI GGATC 1 cut(s) 515
AcsI RAATTY 2 cut(s) 912, 1056
AfaI GTAC 5 cut(s) 226, 671, 735, 938, 1053
AfiI CCNNNNNNNGG 5 cut(s) 379, 901, 992, 1157, 1158
AflII CTTAAG 1 cut(s) 745
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 7 cut(s) 38, 209, 243, 676, 722, 773, 1120
AluBI AGCT 3 cut(s) 478, 589, 622
AluI AGCT 3 cut(s) 478, 589, 622
Alw21I GWGCWC 3 cut(s) 507, 812, 985
Alw26I GTCTC 3 cut(s) 96, 133, 702
Alw44I GTGCAC 1 cut(s) 981
AlwI GGATC 1 cut(s) 515
Aor13HI TCCGGA 2 cut(s) 229, 372
AoxI GGCC 1 cut(s) 248
ApaLI GTGCAC 1 cut(s) 981
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 2 cut(s) 912, 1056
Asp700I GAANNNNTTC 1 cut(s) 490
AspLEI GCGC 1 cut(s) 549
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 4 cut(s) 248, 407, 994, 1037
AsuII TTCGAA 2 cut(s) 484, 581
BaeGI GKGCMC 1 cut(s) 985
BaeI ACNNNNGTAYC 2 cut(s) 287, 320
Bbv12I GWGCWC 3 cut(s) 507, 812, 985
BbvI GCAGC 1 cut(s) 132
BccI CCATC 4 cut(s) 401, 442, 654, 893
BceAI ACGGC 2 cut(s) 567, 594
BciVI GTATCC 1 cut(s) 955
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 3 cut(s) 96, 133, 702
BfaI CTAG 2 cut(s) 165, 737
BfrI CTTAAG 1 cut(s) 745
BfuAI ACCTGC 1 cut(s) 282
BfuI GTATCC 1 cut(s) 955
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmcAI AGTACT 1 cut(s) 671
BmgT120I GGNCC 1 cut(s) 248
BmsI GCATC 3 cut(s) 125, 534, 1095
BplI GAGNNNNNCTC 2 cut(s) 489, 521
BpmI CTGGAG 1 cut(s) 864
Bpu14I TTCGAA 2 cut(s) 484, 581
BpuEI CTTGAG 1 cut(s) 1075
Bsa29I ATCGAT 1 cut(s) 888
BsaBI GATNNNNATC 1 cut(s) 38
BsaJI CCNNGG 5 cut(s) 259, 282, 348, 593, 803
BsaWI WCCGGW 2 cut(s) 229, 372
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 5 cut(s) 379, 901, 992, 1157, 1158
Bse1I ACTGG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 38
BseAI TCCGGA 2 cut(s) 229, 372
BseCI ATCGAT 1 cut(s) 888
BseDI CCNNGG 5 cut(s) 259, 282, 348, 593, 803
BseGI GGATG 3 cut(s) 116, 180, 549
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 5 cut(s) 379, 901, 992, 1157, 1158
BseMII CTCAG 2 cut(s) 609, 619
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 3 cut(s) 66, 527, 1112
BseSI GKGCMC 1 cut(s) 985
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 888
BsiHKAI GWGCWC 3 cut(s) 507, 812, 985
BsiSI CCGG 2 cut(s) 230, 373
BslI CCNNNNNNNGG 5 cut(s) 379, 901, 992, 1157, 1158
BsmAI GTCTC 3 cut(s) 96, 133, 702
BsmBI CGTCTC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 1 cut(s) 250
Bsp119I TTCGAA 2 cut(s) 484, 581
Bsp1286I GDGCHC 3 cut(s) 507, 812, 985
Bsp13I TCCGGA 2 cut(s) 229, 372
Bsp1407I TGTACA 1 cut(s) 1051
Bsp143I GATC 4 cut(s) 22, 322, 414, 520
Bsp19I CCATGG 2 cut(s) 259, 282
BspACI CCGC 1 cut(s) 917
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 2 cut(s) 610, 618
BspDI ATCGAT 1 cut(s) 888
BspEI TCCGGA 2 cut(s) 229, 372
BspHI TCATGA 1 cut(s) 652
BspMI ACCTGC 1 cut(s) 282
BspPI GGATC 1 cut(s) 515
BspT104I TTCGAA 2 cut(s) 484, 581
BspTI CTTAAG 1 cut(s) 745
BsrGI TGTACA 1 cut(s) 1051
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 5 cut(s) 259, 282, 348, 593, 803
BssMI GATC 4 cut(s) 22, 322, 414, 520
BssT1I CCWWGG 5 cut(s) 259, 282, 348, 593, 803
Bst4CI ACNGT 2 cut(s) 190, 978
BstAFI CTTAAG 1 cut(s) 745
BstAUI TGTACA 1 cut(s) 1051
BstBI TTCGAA 2 cut(s) 484, 581
BstC8I GCNNGC 2 cut(s) 279, 878
BstDEI CTNAG 4 cut(s) 83, 605, 618, 953
BstDSI CCRYGG 2 cut(s) 259, 282
BstEII GGTNACC 1 cut(s) 1025
BstF5I GGATG 3 cut(s) 116, 180, 549
BstHHI GCGC 1 cut(s) 549
BstKTI GATC 4 cut(s) 25, 325, 417, 523
BstMAI GTCTC 3 cut(s) 96, 133, 702
BstMBI GATC 4 cut(s) 22, 322, 414, 520
BstMWI GCNNNNNNNGC 2 cut(s) 307, 762
BstNSI RCATGY 2 cut(s) 734, 880
BstPI GGTNACC 1 cut(s) 1025
BstSLI GKGCMC 1 cut(s) 985
BstV1I GCAGC 1 cut(s) 132
Bsu15I ATCGAT 1 cut(s) 888
BsuI GTATCC 1 cut(s) 955
BsuRI GGCC 1 cut(s) 250
BsuTUI ATCGAT 1 cut(s) 888
BtgI CCRYGG 2 cut(s) 259, 282
BtgZI GCGATG 1 cut(s) 949
BtsCI GGATG 3 cut(s) 116, 180, 549
BtsIMutI CAGTG 1 cut(s) 983
BveI ACCTGC 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 279, 878
CciI TCATGA 1 cut(s) 652
CfoI GCGC 1 cut(s) 549
Cfr13I GGNCC 1 cut(s) 248
ClaI ATCGAT 1 cut(s) 888
Csp6I GTAC 5 cut(s) 225, 670, 734, 937, 1052
CviAII CATG 9 cut(s) 260, 283, 540, 653, 731, 866, 877, 922, 1063
CviQI GTAC 5 cut(s) 225, 670, 734, 937, 1052
DdeI CTNAG 4 cut(s) 83, 605, 618, 953
DpnI GATC 4 cut(s) 24, 324, 416, 522
DpnII GATC 4 cut(s) 22, 322, 414, 520
DraI TTTAAA 1 cut(s) 837
EciI GGCGGA 1 cut(s) 906
Eco130I CCWWGG 5 cut(s) 259, 282, 348, 593, 803
Eco91I GGTNACC 1 cut(s) 1025
EcoO65I GGTNACC 1 cut(s) 1025
EcoT14I CCWWGG 5 cut(s) 259, 282, 348, 593, 803
ErhI CCWWGG 5 cut(s) 259, 282, 348, 593, 803
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 9 cut(s) 263, 286, 543, 656, 734, 869, 880, 925, 1066
FatI CATG 9 cut(s) 259, 282, 539, 652, 730, 865, 876, 921, 1062
FauNDI CATATG 1 cut(s) 970
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 3 cut(s) 103, 167, 556
Fsp4HI GCNGC 1 cut(s) 146
FspAI RTGCGCAY 1 cut(s) 548
FspBI CTAG 2 cut(s) 165, 737
FspI TGCGCA 1 cut(s) 548
GlaI GCGC 1 cut(s) 548
GluI GCNGC 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 1 cut(s) 250
HapII CCGG 2 cut(s) 230, 373
HhaI GCGC 1 cut(s) 549
Hin1II CATG 9 cut(s) 263, 286, 543, 656, 734, 869, 880, 925, 1066
Hin6I GCGC 1 cut(s) 547
HinP1I GCGC 1 cut(s) 547
HinfI GANTC 4 cut(s) 79, 334, 814, 1162
HpaII CCGG 2 cut(s) 230, 373
HphI GGTGA 4 cut(s) 248, 407, 994, 1037
Hpy166II GTNNAC 2 cut(s) 641, 983
Hpy188I TCNGA 6 cut(s) 44, 365, 619, 787, 909, 933
Hpy188III TCNNGA 4 cut(s) 230, 373, 495, 653
Hpy8I GTNNAC 2 cut(s) 641, 983
HpyAV CCTTC 2 cut(s) 377, 958
HpyCH4III ACNGT 2 cut(s) 190, 978
HpyCH4V TGCA 6 cut(s) 128, 277, 310, 857, 983, 1144
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 762
HpyF3I CTNAG 4 cut(s) 83, 605, 618, 953
Hsp92II CATG 9 cut(s) 263, 286, 543, 656, 734, 869, 880, 925, 1066
HspAI GCGC 1 cut(s) 547
Kpn2I TCCGGA 2 cut(s) 229, 372
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 4 cut(s) 22, 322, 414, 520
LmnI GCTCC 1 cut(s) 807
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 3 cut(s) 125, 534, 1095
MaeI CTAG 2 cut(s) 165, 737
MaeIII GTNAC 2 cut(s) 167, 1025
MalI GATC 4 cut(s) 24, 324, 416, 522
MboI GATC 4 cut(s) 22, 322, 414, 520
MboII GAAGA 2 cut(s) 299, 641
MfeI CAATTG 2 cut(s) 243, 1120
MhlI GDGCHC 3 cut(s) 507, 812, 985
MluCI AATT 9 cut(s) 96, 107, 243, 751, 912, 987, 1056, 1074, 1120
MlyI GAGTC 3 cut(s) 73, 328, 1156
MroI TCCGGA 2 cut(s) 229, 372
MroXI GAANNNNTTC 1 cut(s) 490
MseI TTAA 3 cut(s) 177, 746, 836
MslI CAYNNNNRTG 1 cut(s) 651
MspCI CTTAAG 1 cut(s) 745
MspI CCGG 2 cut(s) 230, 373
MunI CAATTG 2 cut(s) 243, 1120
Mva1269I GAATGC 1 cut(s) 310
MwoI GCNNNNNNNGC 2 cut(s) 307, 762
NcoI CCATGG 2 cut(s) 259, 282
NdeI CATATG 1 cut(s) 970
NdeII GATC 4 cut(s) 22, 322, 414, 520
NlaIII CATG 9 cut(s) 263, 286, 543, 656, 734, 869, 880, 925, 1066
NmuCI GTSAC 1 cut(s) 1025
NsbI TGCGCA 1 cut(s) 548
NspI RCATGY 2 cut(s) 734, 880
NspV TTCGAA 2 cut(s) 484, 581
PaeI GCATGC 1 cut(s) 880
PagI TCATGA 1 cut(s) 652
PciI ACATGT 1 cut(s) 730
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PctI GAATGC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 490
PfeI GAWTC 1 cut(s) 814
PkrI GCNGC 1 cut(s) 147
PleI GAGTC 3 cut(s) 73, 328, 1156
PpsI GAGTC 3 cut(s) 73, 328, 1156
PscI ACATGT 1 cut(s) 730
PsiI TTATAA 1 cut(s) 560
PspEI GGTNACC 1 cut(s) 1025
PspPI GGNCC 1 cut(s) 248
RsaI GTAC 5 cut(s) 226, 671, 735, 938, 1053
RsaNI GTAC 5 cut(s) 225, 670, 734, 937, 1052
RseI CAYNNNNRTG 1 cut(s) 651
SaqAI TTAA 3 cut(s) 177, 746, 836
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 4 cut(s) 22, 322, 414, 520
Sau96I GGNCC 1 cut(s) 248
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 3 cut(s) 73, 328, 1156
SduI GDGCHC 3 cut(s) 507, 812, 985
SfaNI GCATC 3 cut(s) 125, 534, 1095
SfuI TTCGAA 2 cut(s) 484, 581
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 2 cut(s) 745, 1090
SmoI CTYRAG 2 cut(s) 745, 1090
SphI GCATGC 1 cut(s) 880
Sse9I AATT 9 cut(s) 96, 107, 243, 751, 912, 987, 1056, 1074, 1120
SsiI CCGC 1 cut(s) 917
SspMI CTAG 2 cut(s) 165, 737
StyI CCWWGG 5 cut(s) 259, 282, 348, 593, 803
TaaI ACNGT 2 cut(s) 190, 978
TaqI TCGA 5 cut(s) 325, 484, 581, 882, 888
TasI AATT 9 cut(s) 96, 107, 243, 751, 912, 987, 1056, 1074, 1120
TatI WGTACW 3 cut(s) 669, 733, 1051
TfiI GAWTC 1 cut(s) 814
Tru1I TTAA 3 cut(s) 177, 746, 836
Tru9I TTAA 3 cut(s) 177, 746, 836
TscAI CASTG 1 cut(s) 983
TseFI GTSAC 1 cut(s) 1025
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 1025
TspDTI ATGAA 2 cut(s) 641, 987
TspGWI ACGGA 2 cut(s) 1086, 1155
TspRI CASTG 1 cut(s) 983
Vha464I CTTAAG 1 cut(s) 745
VneI GTGCAC 1 cut(s) 981
XapI RAATTY 2 cut(s) 912, 1056
XceI RCATGY 2 cut(s) 734, 880
XmnI GAANNNNTTC 1 cut(s) 490
XspI CTAG 2 cut(s) 165, 737
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.