Rh2DG592400

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000351
Physical Location & Seq
Forward (+)
82468888 .. 82469487
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG592400.1

Sequence Viewer

Length: 600 bp
ATGAGAACAGCTATAGTTGGACCAAAAACAGTAACCATTCTTACTCTTCCTCGTTACTTGTTTCCCTGTGTGACAGAGCTGCTACAACTTGGAGTCAGATATAAATCTAGAGATAGTTCTTGCAATCTGCTCAACATAACCTTCTGCGATGGAGTGATGGAGATTCCTCAGATTTTTGTTCACAAAAATGAATCTCTTTTTCTAAACCTCATTGCCCTTGAACAGTGTGAACAAGGGCCCATTGGATGTGATTTTACCTCATATGCCAGGGTCCTGCATTACCTTATTAAGTCAGGCAAAGATGCAGACTTTCTCATGCAGAAGGGAATCATAAAAACCAGATTGAGCAAGGAGGACATAGCTCGTCTCTTCACCGGTGTTTGCAATAACACTGCATTTGCTTCTGACTCTTTCTCTGATCTCTCCCAGGAAGTTCATTTGTTTTCCAAGGAGCGTTGGCTGCAGAGATGCCTAATTAGCATTAAACGGGATTATTTATACAATCCATCTTCCATCTGGTCAATTTCTAATGCGGTCTTCCTTGTCATAATTCTCACATTCACACAAACCTTATATACTGTTCTCTCTTACTACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

199

Amino Acids

22.78

Weight (kDa)

8.65

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 20 - 183 3.1e-36 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 533
AgeI ACCGGT 1 cut(s) 374
AgsI TTSAA 1 cut(s) 221
AjnI CCWGG 2 cut(s) 266, 426
AluBI AGCT 3 cut(s) 11, 79, 362
AluI AGCT 3 cut(s) 11, 79, 362
Alw26I GTCTC 1 cut(s) 371
AoxI GGCC 1 cut(s) 236
ApaI GGGCCC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 79, 460
AsiGI ACCGGT 1 cut(s) 374
AspS9I GGNCC 4 cut(s) 20, 236, 237, 271
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 2 cut(s) 20, 271
BaeGI GKGCMC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 529
BbvI GCAGC 2 cut(s) 66, 447
BccI CCATC 4 cut(s) 143, 151, 514, 521
BciT130I CCWGG 2 cut(s) 268, 428
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 2 cut(s) 12, 461
BisI GCNGC 2 cut(s) 80, 461
BlsI GCNGC 2 cut(s) 81, 462
Bme1390I CCNGG 2 cut(s) 268, 428
Bme18I GGWCC 2 cut(s) 20, 271
BmgT120I GGNCC 4 cut(s) 20, 236, 237, 271
BmiI GGNNCC 2 cut(s) 238, 272
BmrFI CCNGG 2 cut(s) 268, 428
BmsI GCATC 2 cut(s) 292, 458
BpiI GAAGAC 1 cut(s) 529
BsaBI GATNNNNATC 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 267, 426, 447
BsaWI WCCGGW 1 cut(s) 374
Bse118I RCCGGY 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 103
BseBI CCWGG 2 cut(s) 268, 428
BseDI CCNNGG 3 cut(s) 267, 426, 447
BseGI GGATG 1 cut(s) 251
BseJI GATNNNNATC 1 cut(s) 103
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 2 cut(s) 66, 447
BshFI GGCC 1 cut(s) 238
BshTI ACCGGT 1 cut(s) 374
BsiSI CCGG 1 cut(s) 375
BsmAI GTCTC 1 cut(s) 371
BsmBI CGTCTC 1 cut(s) 371
BsnI GGCC 1 cut(s) 238
Bsp120I GGGCCC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 418
BspACI CCGC 1 cut(s) 533
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 238, 272
BspMAI CTGCAG 1 cut(s) 465
BsrDI GCAATG 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 374
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 3 cut(s) 267, 426, 447
BssMI GATC 1 cut(s) 418
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 268, 428
Bst4CI ACNGT 3 cut(s) 31, 225, 580
Bst6I CTCTTC 2 cut(s) 51, 374
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 2 cut(s) 460, 477
BstNI CCWGG 2 cut(s) 268, 428
BstSCI CCNGG 2 cut(s) 266, 426
BstSFI CTRYAG 2 cut(s) 12, 461
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 66, 447
BstV2I GAAGAC 1 cut(s) 529
BsuRI GGCC 1 cut(s) 238
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 251
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 2 cut(s) 230, 390
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 4 cut(s) 20, 236, 237, 271
CspAI ACCGGT 1 cut(s) 374
CviAII CATG 1 cut(s) 316
CviJI RGCY 5 cut(s) 11, 79, 238, 362, 460
CviKI_1 RGCY 5 cut(s) 11, 79, 238, 362, 460
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
Eam1104I CTCTTC 2 cut(s) 51, 374
EarI CTCTTC 2 cut(s) 51, 374
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 20, 271
EcoO109I RGGNCCY 2 cut(s) 236, 271
EcoRII CCWGG 2 cut(s) 266, 426
EcoT14I CCWWGG 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 447
Esp3I CGTCTC 1 cut(s) 371
FaeI CATG 1 cut(s) 319
FatI CATG 1 cut(s) 315
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 80, 461
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 2 cut(s) 80, 461
FspBI CTAG 1 cut(s) 108
GluI GCNGC 2 cut(s) 80, 461
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 375
Hin1II CATG 1 cut(s) 319
HinfI GANTC 5 cut(s) 93, 163, 191, 327, 407
HpaII CCGG 1 cut(s) 375
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 2 cut(s) 181, 230
Hpy188I TCNGA 4 cut(s) 98, 171, 406, 418
Hpy188III TCNNGA 1 cut(s) 108
Hpy8I GTNNAC 2 cut(s) 181, 230
HpyAV CCTTC 2 cut(s) 151, 316
HpyCH4III ACNGT 3 cut(s) 31, 225, 580
HpyCH4V TGCA 7 cut(s) 123, 277, 305, 319, 384, 395, 463
HpyF10VI GCNNNNNNNGC 2 cut(s) 460, 477
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 319
Kzo9I GATC 1 cut(s) 418
LmnI GCTCC 1 cut(s) 451
Lsp1109I GCAGC 2 cut(s) 66, 447
LweI GCATC 2 cut(s) 292, 458
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 3 cut(s) 31, 53, 70
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 4 cut(s) 38, 361, 501, 529
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 3 cut(s) 474, 522, 549
MlyI GAGTC 2 cut(s) 102, 401
MnlI CCTC 5 cut(s) 60, 177, 218, 268, 346
MseI TTAA 2 cut(s) 288, 483
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 2 cut(s) 268, 428
MvaI CCWGG 2 cut(s) 268, 428
MwoI GCNNNNNNNGC 2 cut(s) 460, 477
NdeI CATATG 1 cut(s) 262
NdeII GATC 1 cut(s) 418
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 2 cut(s) 238, 272
NmuCI GTSAC 1 cut(s) 70
PfeI GAWTC 3 cut(s) 163, 191, 327
PinAI ACCGGT 1 cut(s) 374
PkrI GCNGC 2 cut(s) 81, 462
PleI GAGTC 2 cut(s) 101, 401
PpsI GAGTC 2 cut(s) 101, 401
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 266, 426
PspGI CCWGG 2 cut(s) 266, 426
PspN4I GGNNCC 2 cut(s) 238, 272
PspOMI GGGCCC 1 cut(s) 236
PspPI GGNCC 4 cut(s) 20, 236, 237, 271
PspPPI RGGWCCY 1 cut(s) 271
PstI CTGCAG 1 cut(s) 465
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 2 cut(s) 288, 483
SatI GCNGC 2 cut(s) 80, 461
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 4 cut(s) 20, 236, 237, 271
SchI GAGTC 2 cut(s) 102, 401
ScrFI CCNGG 2 cut(s) 268, 428
SduI GDGCHC 1 cut(s) 240
SetI ASST 8 cut(s) 13, 81, 143, 210, 260, 285, 364, 572
SfaNI GCATC 2 cut(s) 292, 458
SfcI CTRYAG 2 cut(s) 12, 461
SgrAI CRCCGGYG 1 cut(s) 374
SinI GGWCC 2 cut(s) 20, 271
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 3 cut(s) 474, 522, 549
SsiI CCGC 1 cut(s) 533
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 266, 426
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 3 cut(s) 31, 225, 580
TasI AATT 3 cut(s) 474, 522, 549
TfiI GAWTC 3 cut(s) 163, 191, 327
Tru1I TTAA 2 cut(s) 288, 483
Tru9I TTAA 2 cut(s) 288, 483
TscAI CASTG 2 cut(s) 230, 397
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 2 cut(s) 79, 460
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 204, 425
TspRI CASTG 2 cut(s) 230, 397
VpaK11BI GGWCC 2 cut(s) 20, 271
XbaI TCTAGA 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.