RLG00000022074

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000351
Physical Location & Seq
Forward (+)
80677412 .. 80678431
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022074

Sequence Viewer

Length: 1020 bp
ATGGAAGAATATTGTCGCGATTGCTATGCTGAAAATCTGGATCTCAGTAGCGAAGCATTTGTGGAAATGATGGTTATTGATAGTTGCTTTATTATTGAATTCTATTGCGGAATGGCAGGAGAGTTTTTCACCATGGAAAATATGCTTATGCATGCAATCGAAGGCCCAGACTTCCCTCGGTCAGTAGCTGCATCTGACTTGCTTCCACTAGAAAGCCAGCTGCCTTGGGGAGTTGTTGAATGTTTATTTGAACTCACAAAGGAACCCAATCAAGAACGTTCTTGCAACTCTCTGACAGAGCTTTGTGGTAGAGTGTGGAGGGATCCGGTTGAGATTGTAGTTTGTGGTAGACCGCTTGGAATTGTAGAGGAGAAATCGAGAAGCCGACATCTACTTGACACTTCGCGACTCTTCTCATCTGGACCAGACCACAGATGTGAAGTTTATTCATGGTTCTCGCTCCCTTCTTCTGCAACGGAGCTTTTGCAAATTGGAGTGAAATTCAGAAGAAGACGGAGTGATGACAATATCCTTACTGTAACCTTCGTGAACGGAGTAATGGAGATTTCACCGATATTTGGGAAACCTTTCCATCTACTGAGAAAACTCGTCGCCATGGAAGAGTGCGATTCGACAGGTCCCCATCAGTATAAGATTACCTCTTATTGCAGGATCATGAATGATCTTATTAAGTTAACCAAAGATGTGGAGCTTCTCATTGAAAAAGGCATTCTTCTGAGGGTCGGCATCAGCAAGGAGGAGTTAGCTGGTTTCTTTAATGACATTTGCAACAATACTGTCACAACCTCCTCCTCTTCTGCGTCATTTGTTGAAATTTCCAGAAGTGTGTGGCTATATTATAAGAGGCATTGGGTATGGAGATGGATAGCATGGATCAAGCATGACTATTTGTACAATCCATCATCAATATGGTTGGTTTCTAATGCAATGGTTCTTGTTATAATTCTCACCGCCATACGGACTATATATTCAGTTCTCTCTTACTACAAGTCGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

340

Amino Acids

39.05

Weight (kDa)

5.4

Isoelectric Point (pI)

60.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 321 5e-60 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 861, 962
AccI GTMKAC 2 cut(s) 349, 1013
AccII CGCG 2 cut(s) 18, 406
AciI CCGC 3 cut(s) 108, 353, 972
AclI AACGTT 1 cut(s) 277
AclWI GGATC 5 cut(s) 48, 317, 330, 680, 902
AcsI RAATTY 3 cut(s) 98, 500, 834
AfaI GTAC 1 cut(s) 914
AfiI CCNNNNNNNGG 2 cut(s) 578, 978
AgsI TTSAA 5 cut(s) 98, 239, 251, 722, 833
AleI CACNNNNGTG 1 cut(s) 435
AluBI AGCT 6 cut(s) 188, 220, 301, 481, 712, 767
AluI AGCT 6 cut(s) 188, 220, 301, 481, 712, 767
AlwI GGATC 5 cut(s) 48, 317, 330, 680, 902
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 188, 220
ApoI RAATTY 3 cut(s) 98, 500, 834
Asp700I GAANNNNTTC 1 cut(s) 587
AspS9I GGNCC 3 cut(s) 164, 422, 638
AsuHPI GGTGA 3 cut(s) 121, 561, 961
AvaII GGWCC 2 cut(s) 422, 638
BamHI GGATCC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 517
BbvI GCAGC 2 cut(s) 175, 207
BccI CCATC 5 cut(s) 64, 600, 651, 876, 928
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BfaI CTAG 2 cut(s) 209, 1018
BisI GCNGC 2 cut(s) 189, 221
BlsI GCNGC 2 cut(s) 190, 222
Bme18I GGWCC 2 cut(s) 422, 638
BmgT120I GGNCC 3 cut(s) 164, 422, 638
BmiI GGNNCC 3 cut(s) 264, 324, 640
BmsI GCATC 2 cut(s) 200, 756
BpiI GAAGAC 1 cut(s) 517
BsaJI CCNNGG 4 cut(s) 132, 176, 224, 615
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 2 cut(s) 578, 978
Bse3DI GCAATG 1 cut(s) 954
BseDI CCNNGG 4 cut(s) 132, 176, 224, 615
BseLI CCNNNNNNNGG 2 cut(s) 578, 978
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 3 cut(s) 58, 590, 728
BseRI GAGGAG 4 cut(s) 383, 773, 799, 802
BseXI GCAGC 2 cut(s) 175, 207
Bsh1236I CGCG 2 cut(s) 18, 406
BshFI GGCC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 2 cut(s) 578, 978
BsmFI GGGAC 1 cut(s) 624
BsmI GAATGC 1 cut(s) 729
BsnI GGCC 1 cut(s) 165
Bsp1407I TGTACA 1 cut(s) 912
Bsp143I GATC 5 cut(s) 40, 322, 672, 682, 894
Bsp19I CCATGG 2 cut(s) 132, 615
Bsp68I TCGCGA 2 cut(s) 18, 406
BspACI CCGC 3 cut(s) 108, 353, 972
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 3 cut(s) 57, 591, 729
BspFNI CGCG 2 cut(s) 18, 406
BspHI TCATGA 1 cut(s) 675
BspLI GGNNCC 3 cut(s) 264, 324, 640
BspPI GGATC 5 cut(s) 48, 317, 330, 680, 902
BsrDI GCAATG 1 cut(s) 954
BsrGI TGTACA 1 cut(s) 912
BssECI CCNNGG 4 cut(s) 132, 176, 224, 615
BssMI GATC 5 cut(s) 40, 322, 672, 682, 894
BssT1I CCWWGG 3 cut(s) 132, 224, 615
Bst4CI ACNGT 2 cut(s) 538, 799
Bst6I CTCTTC 3 cut(s) 416, 615, 820
BstAUI TGTACA 1 cut(s) 912
BstC8I GCNNGC 2 cut(s) 153, 218
BstDEI CTNAG 3 cut(s) 44, 599, 737
BstDSI CCRYGG 2 cut(s) 132, 615
BstFNI CGCG 2 cut(s) 18, 406
BstKTI GATC 5 cut(s) 43, 325, 675, 685, 897
BstMBI GATC 5 cut(s) 40, 322, 672, 682, 894
BstNSI RCATGY 1 cut(s) 155
BstUI CGCG 2 cut(s) 18, 406
BstV1I GCAGC 2 cut(s) 175, 207
BstV2I GAAGAC 1 cut(s) 517
BstX2I RGATCY 2 cut(s) 40, 322
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 2 cut(s) 40, 322
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 2 cut(s) 132, 615
BtuMI TCGCGA 2 cut(s) 18, 406
Cac8I GCNNGC 2 cut(s) 153, 218
CaiI CAGNNNCTG 1 cut(s) 188
CciI TCATGA 1 cut(s) 675
Cfr13I GGNCC 3 cut(s) 164, 422, 638
CseI GACGC 1 cut(s) 810
Csp6I GTAC 1 cut(s) 913
CviAII CATG 7 cut(s) 133, 152, 450, 616, 676, 891, 902
CviQI GTAC 1 cut(s) 913
DdeI CTNAG 3 cut(s) 44, 599, 737
DpnI GATC 5 cut(s) 42, 324, 674, 684, 896
DpnII GATC 5 cut(s) 40, 322, 672, 682, 894
Eam1104I CTCTTC 3 cut(s) 416, 615, 820
EarI CTCTTC 3 cut(s) 416, 615, 820
Eco130I CCWWGG 3 cut(s) 132, 224, 615
Eco47I GGWCC 2 cut(s) 422, 638
EcoO109I RGGNCCY 1 cut(s) 638
EcoRI GAATTC 1 cut(s) 98
EcoT14I CCWWGG 3 cut(s) 132, 224, 615
EcoT22I ATGCAT 1 cut(s) 153
ErhI CCWWGG 3 cut(s) 132, 224, 615
FaeI CATG 7 cut(s) 136, 155, 453, 619, 679, 894, 905
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FaqI GGGAC 1 cut(s) 624
FatI CATG 7 cut(s) 132, 151, 449, 615, 675, 890, 901
FblI GTMKAC 2 cut(s) 349, 1013
Fnu4HI GCNGC 2 cut(s) 189, 221
Fsp4HI GCNGC 2 cut(s) 189, 221
FspBI CTAG 2 cut(s) 209, 1018
GluI GCNGC 2 cut(s) 189, 221
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 326
HgaI GACGC 1 cut(s) 810
Hin1II CATG 7 cut(s) 136, 155, 453, 619, 679, 894, 905
HincII GTYRAC 2 cut(s) 696, 1014
HindII GTYRAC 2 cut(s) 696, 1014
HinfI GANTC 2 cut(s) 408, 629
HpaI GTTAAC 1 cut(s) 696
HpaII CCGG 1 cut(s) 326
HphI GGTGA 3 cut(s) 121, 561, 961
Hpy166II GTNNAC 4 cut(s) 350, 550, 696, 1014
Hpy188I TCNGA 4 cut(s) 196, 294, 506, 738
Hpy188III TCNNGA 9 cut(s) 17, 38, 272, 378, 405, 420, 547, 676, 840
Hpy8I GTNNAC 4 cut(s) 350, 550, 696, 1014
Hpy99I CGWCG 1 cut(s) 614
HpyAV CCTTC 3 cut(s) 155, 474, 553
HpyCH4III ACNGT 2 cut(s) 538, 799
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 9 cut(s) 151, 155, 191, 285, 473, 487, 669, 789, 947
HpyF3I CTNAG 3 cut(s) 44, 599, 737
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 7 cut(s) 136, 155, 453, 619, 679, 894, 905
KspAI GTTAAC 1 cut(s) 696
Kzo9I GATC 5 cut(s) 40, 322, 672, 682, 894
LmnI GCTCC 3 cut(s) 465, 478, 709
Lsp1109I GCAGC 2 cut(s) 175, 207
LweI GCATC 2 cut(s) 200, 756
MaeI CTAG 2 cut(s) 209, 1018
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 538, 799
MalI GATC 5 cut(s) 42, 324, 674, 684, 896
MboI GATC 5 cut(s) 40, 322, 672, 682, 894
MboII GAAGA 8 cut(s) 17, 403, 459, 519, 522, 632, 725, 807
MflI RGATCY 2 cut(s) 40, 322
MluCI AATT 6 cut(s) 98, 360, 489, 500, 834, 963
MlyI GAGTC 1 cut(s) 402
Mph1103I ATGCAT 1 cut(s) 153
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 3 cut(s) 690, 695, 777
MslI CAYNNNNRTG 2 cut(s) 435, 928
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 729
MvnI CGCG 2 cut(s) 18, 406
NcoI CCATGG 2 cut(s) 132, 615
NdeII GATC 5 cut(s) 40, 322, 672, 682, 894
NlaIII CATG 7 cut(s) 136, 155, 453, 619, 679, 894, 905
NlaIV GGNNCC 3 cut(s) 264, 324, 640
NmuCI GTSAC 1 cut(s) 799
NruI TCGCGA 2 cut(s) 18, 406
NsiI ATGCAT 1 cut(s) 153
NspI RCATGY 1 cut(s) 155
OliI CACNNNNGTG 1 cut(s) 435
PaeI GCATGC 1 cut(s) 155
PagI TCATGA 1 cut(s) 675
PctI GAATGC 1 cut(s) 729
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 1 cut(s) 629
PkrI GCNGC 2 cut(s) 190, 222
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
PpuMI RGGWCCY 1 cut(s) 638
PsiI TTATAA 2 cut(s) 861, 962
Psp1406I AACGTT 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 638
PspN4I GGNNCC 3 cut(s) 264, 324, 640
PspPI GGNCC 3 cut(s) 164, 422, 638
PspPPI RGGWCCY 1 cut(s) 638
PstNI CAGNNNCTG 1 cut(s) 188
PsuI RGATCY 2 cut(s) 40, 322
PvuII CAGCTG 1 cut(s) 220
RruI TCGCGA 2 cut(s) 18, 406
RsaI GTAC 1 cut(s) 914
RsaNI GTAC 1 cut(s) 913
RseI CAYNNNNRTG 2 cut(s) 435, 928
SalI GTCGAC 1 cut(s) 1012
SaqAI TTAA 3 cut(s) 690, 695, 777
SatI GCNGC 2 cut(s) 189, 221
Sau3AI GATC 5 cut(s) 40, 322, 672, 682, 894
Sau96I GGNCC 3 cut(s) 164, 422, 638
SchI GAGTC 1 cut(s) 402
SfaNI GCATC 2 cut(s) 200, 756
SinI GGWCC 2 cut(s) 422, 638
SmiMI CAYNNNNRTG 2 cut(s) 435, 928
SphI GCATGC 1 cut(s) 155
Sse9I AATT 6 cut(s) 98, 360, 489, 500, 834, 963
SsiI CCGC 3 cut(s) 108, 353, 972
SspI AATATT 1 cut(s) 11
SspMI CTAG 2 cut(s) 209, 1018
StyI CCWWGG 3 cut(s) 132, 224, 615
TaaI ACNGT 2 cut(s) 538, 799
TaiI ACGT 1 cut(s) 280
TaqI TCGA 4 cut(s) 159, 377, 632, 1013
TaqII GACCGA 1 cut(s) 168
TasI AATT 6 cut(s) 98, 360, 489, 500, 834, 963
TatI WGTACW 1 cut(s) 912
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 3 cut(s) 690, 695, 777
Tru9I TTAA 3 cut(s) 690, 695, 777
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 2 cut(s) 188, 220
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 2 cut(s) 438, 692
TspGWI ACGGA 4 cut(s) 491, 529, 567, 994
VpaK11BI GGWCC 2 cut(s) 422, 638
XapI RAATTY 3 cut(s) 98, 500, 834
XceI RCATGY 1 cut(s) 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 927
XmiI GTMKAC 2 cut(s) 349, 1013
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 2 cut(s) 209, 1018
Zsp2I ATGCAT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.