Prupe.7G207800_v2.0.a1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000351
Physical Location & Seq
Forward (+)
19100333 .. 19101604
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G207800.1

Sequence Viewer

Length: 1239 bp
ATGGCAACCTTGAGTGAAAATAGAAATGCTGTGGAATTAATAGTGTCCTCAATTCGAGGAAGGATTCAGCAGCAGCCTCCACTTCCTGCTTGTAGTTGCATATTTAGAATCCCTAATGTATTACGCAGGCATAATGAAAAAGCCTTTGTTCCAGATTTAATTTCAATAGGGCCATTTCACCACGGAAAAAAGGACCTGCAAGTCATGGAAGAGATTAAGCTATGGTATTTGCATTGCCTCCTTGATCGAAATCCAACTTCAGAGACCAGTTTGGAGTACTTGGTCGAAGCCATTAAAAGTATAGAGCAACACTGTCGAGATTGTTATCAAGAAAGAATTGATATGAGTAGTGAAAAATTTGTGGAAATGATGGTGGTTGATGCGAAAGATGTGCCCAAAAACGAGGATGATCCTGTGTTCTATACGGCATGGATGCGGTTGGCACTTACAAAAGACTTGTTTCTAGTTGAAAACCAACTTCCTTGGAAAGTCGTTGACTGTTTATTCCACCACACAAAGGAAAAAAATGAACCAGAATCCGAAGCTCTACTCCTGCCTGCTCTGAAATTCTTTGAGCCGTTTGCATTCGACCAGGATCCACACGCCGACAGACCATTGGAAACTAAGCATTTACTTGATGGCATAAGAAACTCTTTACTTGGCTCGTACCCGTCGCAAGCTGATTATAGATATTGGGAACCGATTCCTTCTGTCACAGAACTTTTACAAGCTGGTGTCGAATTTAAAGTTAGAAGCAATACTTGGGACAACATGCTCGACATAACCTTCAAAAATGGAGTTATGGAAATCCCACCAATAGAGATTCGAGACAATGCAGAGTCTCTCTTCAGAAACCTCATCGCCTATGAACAGTGTGATTCAAGCATCATATCTTGTAACATTACCTCGTACGCTGTCATCTTGGATAACCTTATTAACACTAGCAAAGATGCGGACTTTCTCATTCAGAAAGAAATCATAGTTACAAAATTGAGCAAGGAGGACATAGCCTGTCTCTTCAATAGGCTTTACAGTGACACTACAGTTGCCTATTTCTGTTACGTGGAACTCACCAAGAATGTGAATGCATATTATCAGGACCGCTGGCACAGATGGCAAACAATTCTCAGACGTGATTATTTCAGCAATCCATGGTCAATCTTTTCGCTTGCTGCCGCGCTCTTGATCCTAGGTTTTACCTTCTTGCAAACCTTGTATTCCCTTCTGACTTACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

413

Amino Acids

48.03

Weight (kDa)

5.19

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
Acc36I ACCTGC 1 cut(s) 204
AccII CGCG 1 cut(s) 1178
AciI CCGC 4 cut(s) 436, 953, 1102, 1176
AclWI GGATC 4 cut(s) 404, 590, 603, 1180
AcsI RAATTY 3 cut(s) 356, 566, 740
AcuI CTGAAG 2 cut(s) 243, 832
AfaI GTAC 3 cut(s) 278, 668, 911
AfiI CCNNNNNNNGG 1 cut(s) 517
AgsI TTSAA 5 cut(s) 165, 470, 790, 882, 1021
AjiI CACGTC 1 cut(s) 1133
AjnI CCWGG 1 cut(s) 591
AjuI GAANNNNNNNTTGG 2 cut(s) 745, 777
AluBI AGCT 4 cut(s) 220, 545, 680, 731
AluI AGCT 4 cut(s) 220, 545, 680, 731
Alw26I GTCTC 4 cut(s) 257, 822, 846, 1019
AlwI GGATC 4 cut(s) 404, 590, 603, 1180
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 3 cut(s) 70, 73, 1172
ApoI RAATTY 3 cut(s) 356, 566, 740
AseI ATTAAT 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 702
AspA2I CCTAGG 1 cut(s) 1189
AspLEI GCGC 1 cut(s) 1180
AspS9I GGNCC 3 cut(s) 170, 193, 1099
AsuHPI GGTGA 2 cut(s) 170, 1063
AvaII GGWCC 2 cut(s) 193, 1099
AvrII CCTAGG 1 cut(s) 1189
BaeGI GKGCMC 1 cut(s) 396
BamHI GGATCC 1 cut(s) 595
BbvI GCAGC 3 cut(s) 82, 85, 1159
BccI CCATC 3 cut(s) 364, 632, 1107
BceAI ACGGC 2 cut(s) 441, 562
BcgI CGANNNNNNTGC 4 cut(s) 296, 330, 373, 407
BciT130I CCWGG 1 cut(s) 593
BcoDI GTCTC 4 cut(s) 257, 822, 846, 1019
BfaI CTAG 4 cut(s) 464, 942, 1190, 1237
BfmI CTRYAG 1 cut(s) 1041
BfuAI ACCTGC 1 cut(s) 204
BisI GCNGC 4 cut(s) 71, 74, 1173, 1176
BlnI CCTAGG 1 cut(s) 1189
BlsI GCNGC 4 cut(s) 72, 75, 1174, 1177
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 593
Bme18I GGWCC 2 cut(s) 193, 1099
BmgBI CACGTC 1 cut(s) 1133
BmgT120I GGNCC 3 cut(s) 170, 193, 1099
BmiI GGNNCC 2 cut(s) 597, 699
BmrFI CCNGG 1 cut(s) 593
BmsI GCATC 4 cut(s) 370, 423, 894, 940
BpuEI CTTGAG 1 cut(s) 31
BsaAI YACGTR 1 cut(s) 1063
BsaBI GATNNNNATC 2 cut(s) 249, 324
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 4 cut(s) 181, 482, 1151, 1189
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 232
Bse8I GATNNNNATC 2 cut(s) 249, 324
BseBI CCWGG 1 cut(s) 593
BseDI CCNNGG 4 cut(s) 181, 482, 1151, 1189
BseGI GGATG 2 cut(s) 412, 438
BseJI GATNNNNATC 2 cut(s) 249, 324
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 1141
BseNI ACTGG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 396
BseXI GCAGC 3 cut(s) 82, 85, 1159
Bsh1236I CGCG 1 cut(s) 1178
BshFI GGCC 1 cut(s) 172
BsiWI CGTACG 1 cut(s) 909
BslFI GGGAC 1 cut(s) 779
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 4 cut(s) 257, 822, 846, 1019
BsmFI GGGAC 1 cut(s) 779
BsmI GAATGC 2 cut(s) 584, 1090
BsnI GGCC 1 cut(s) 172
Bso31I GGTCTC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 4 cut(s) 244, 409, 595, 1185
Bsp19I CCATGG 1 cut(s) 1151
BspACI CCGC 4 cut(s) 436, 953, 1102, 1176
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 1140
BspFNI CGCG 1 cut(s) 1178
BspLI GGNNCC 2 cut(s) 597, 699
BspMI ACCTGC 1 cut(s) 204
BspPI GGATC 4 cut(s) 404, 590, 603, 1180
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 4 cut(s) 181, 482, 1151, 1189
BssMI GATC 4 cut(s) 244, 409, 595, 1185
BssT1I CCWWGG 3 cut(s) 482, 1151, 1189
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 5 cut(s) 314, 500, 873, 1034, 1045
Bst6I CTCTTC 3 cut(s) 204, 851, 1022
BstBAI YACGTR 1 cut(s) 1063
BstC8I GCNNGC 5 cut(s) 128, 558, 678, 1106, 1170
BstDEI CTNAG 2 cut(s) 624, 1127
BstDSI CCRYGG 2 cut(s) 181, 1151
BstF5I GGATG 2 cut(s) 412, 438
BstFNI CGCG 1 cut(s) 1178
BstHHI GCGC 1 cut(s) 1180
BstKTI GATC 4 cut(s) 247, 412, 598, 1188
BstMAI GTCTC 4 cut(s) 257, 822, 846, 1019
BstMBI GATC 4 cut(s) 244, 409, 595, 1185
BstMWI GCNNNNNNNGC 1 cut(s) 1114
BstNI CCWGG 1 cut(s) 593
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 1 cut(s) 591
BstSFI CTRYAG 1 cut(s) 1041
BstSLI GKGCMC 1 cut(s) 396
BstUI CGCG 1 cut(s) 1178
BstV1I GCAGC 3 cut(s) 82, 85, 1159
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BsuRI GGCC 1 cut(s) 172
BtgI CCRYGG 2 cut(s) 181, 1151
BtgZI GCGATG 1 cut(s) 844
BtrI CACGTC 1 cut(s) 1133
BtsCI GGATG 2 cut(s) 412, 438
BtsIMutI CAGTG 3 cut(s) 310, 878, 1039
BveI ACCTGC 1 cut(s) 204
Cac8I GCNNGC 5 cut(s) 128, 558, 678, 1106, 1170
CfoI GCGC 1 cut(s) 1180
Cfr13I GGNCC 3 cut(s) 170, 193, 1099
Csp6I GTAC 3 cut(s) 277, 667, 910
CviAII CATG 4 cut(s) 205, 429, 772, 1152
CviQI GTAC 3 cut(s) 277, 667, 910
DdeI CTNAG 2 cut(s) 624, 1127
DpnI GATC 4 cut(s) 246, 411, 597, 1187
DpnII GATC 4 cut(s) 244, 409, 595, 1185
DraI TTTAAA 1 cut(s) 745
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
Eam1104I CTCTTC 3 cut(s) 204, 851, 1022
EarI CTCTTC 3 cut(s) 204, 851, 1022
Eco130I CCWWGG 3 cut(s) 482, 1151, 1189
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 2 cut(s) 193, 1099
Eco57I CTGAAG 2 cut(s) 243, 832
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 591
EcoT14I CCWWGG 3 cut(s) 482, 1151, 1189
EcoT22I ATGCAT 1 cut(s) 1090
ErhI CCWWGG 3 cut(s) 482, 1151, 1189
FaeI CATG 4 cut(s) 208, 432, 775, 1155
FalI AAGNNNNNCTT 4 cut(s) 637, 669, 745, 777
FaqI GGGAC 1 cut(s) 779
FatI CATG 4 cut(s) 204, 428, 771, 1151
Fnu4HI GCNGC 4 cut(s) 71, 74, 1173, 1176
FokI GGATG 2 cut(s) 419, 445
Fsp4HI GCNGC 4 cut(s) 71, 74, 1173, 1176
FspBI CTAG 4 cut(s) 464, 942, 1190, 1237
GlaI GCGC 1 cut(s) 1179
GluI GCNGC 4 cut(s) 71, 74, 1173, 1176
HaeIII GGCC 1 cut(s) 172
HhaI GCGC 1 cut(s) 1180
Hin1II CATG 4 cut(s) 208, 432, 775, 1155
Hin6I GCGC 1 cut(s) 1178
HinP1I GCGC 1 cut(s) 1178
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 7 cut(s) 64, 108, 536, 703, 823, 839, 878
HphI GGTGA 2 cut(s) 170, 1063
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 7 cut(s) 262, 541, 564, 851, 969, 1130, 1227
Hpy188III TCNNGA 6 cut(s) 152, 317, 329, 827, 1097, 1183
Hpy8I GTNNAC 1 cut(s) 496
Hpy99I CGWCG 1 cut(s) 676
HpyAV CCTTC 5 cut(s) 54, 717, 796, 1210, 1232
HpyCH4III ACNGT 5 cut(s) 314, 500, 873, 1034, 1045
HpyCH4IV ACGT 2 cut(s) 1062, 1132
HpyCH4V TGCA 7 cut(s) 99, 199, 232, 584, 836, 1088, 1207
HpyF10VI GCNNNNNNNGC 1 cut(s) 1114
HpyF3I CTNAG 2 cut(s) 624, 1127
HpySE526I ACGT 2 cut(s) 1062, 1132
Hsp92II CATG 4 cut(s) 208, 432, 775, 1155
HspAI GCGC 1 cut(s) 1178
Kzo9I GATC 4 cut(s) 244, 409, 595, 1185
Lsp1109I GCAGC 3 cut(s) 82, 85, 1159
LweI GCATC 4 cut(s) 370, 423, 894, 940
MaeI CTAG 4 cut(s) 464, 942, 1190, 1237
MaeII ACGT 2 cut(s) 1062, 1132
MaeIII GTNAC 5 cut(s) 712, 896, 982, 1034, 1058
MalI GATC 4 cut(s) 246, 411, 597, 1187
MboI GATC 4 cut(s) 244, 409, 595, 1185
MboII GAAGA 3 cut(s) 221, 838, 1009
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 9 cut(s) 35, 51, 159, 336, 356, 566, 740, 989, 1122
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 8 cut(s) 50, 58, 87, 248, 397, 866, 916, 994
Mph1103I ATGCAT 1 cut(s) 1090
MroXI GAANNNNTTC 1 cut(s) 702
MseI TTAA 6 cut(s) 38, 158, 216, 294, 744, 936
MspA1I CMGCKG 1 cut(s) 1104
MspR9I CCNGG 1 cut(s) 593
Mva1269I GAATGC 2 cut(s) 584, 1090
MvaI CCWGG 1 cut(s) 593
MvnI CGCG 1 cut(s) 1178
MwoI GCNNNNNNNGC 1 cut(s) 1114
NcoI CCATGG 1 cut(s) 1151
NdeII GATC 4 cut(s) 244, 409, 595, 1185
NlaIII CATG 4 cut(s) 208, 432, 775, 1155
NlaIV GGNNCC 2 cut(s) 597, 699
NmuCI GTSAC 2 cut(s) 712, 1034
NsiI ATGCAT 1 cut(s) 1090
NspI RCATGY 1 cut(s) 775
PctI GAATGC 2 cut(s) 584, 1090
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 6 cut(s) 64, 108, 536, 703, 823, 878
Pfl23II CGTACG 1 cut(s) 909
PkrI GCNGC 4 cut(s) 72, 75, 1174, 1177
PleI GAGTC 1 cut(s) 847
PpsI GAGTC 1 cut(s) 847
Ppu21I YACGTR 1 cut(s) 1063
PpuMI RGGWCCY 1 cut(s) 193
PshBI ATTAAT 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 591
PspGI CCWGG 1 cut(s) 591
PspLI CGTACG 1 cut(s) 909
PspN4I GGNNCC 2 cut(s) 597, 699
PspPI GGNCC 3 cut(s) 170, 193, 1099
PspPPI RGGWCCY 1 cut(s) 193
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 3 cut(s) 278, 668, 911
RsaNI GTAC 3 cut(s) 277, 667, 910
SaqAI TTAA 6 cut(s) 38, 158, 216, 294, 744, 936
SatI GCNGC 4 cut(s) 71, 74, 1173, 1176
Sau3AI GATC 4 cut(s) 244, 409, 595, 1185
Sau96I GGNCC 3 cut(s) 170, 193, 1099
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 4 cut(s) 370, 423, 894, 940
SfcI CTRYAG 1 cut(s) 1041
SinI GGWCC 2 cut(s) 193, 1099
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 9 cut(s) 35, 51, 159, 336, 356, 566, 740, 989, 1122
SsiI CCGC 4 cut(s) 436, 953, 1102, 1176
SspMI CTAG 4 cut(s) 464, 942, 1190, 1237
StyD4I CCNGG 1 cut(s) 591
StyI CCWWGG 3 cut(s) 482, 1151, 1189
TaaI ACNGT 5 cut(s) 314, 500, 873, 1034, 1045
TaiI ACGT 2 cut(s) 1065, 1135
TaqI TCGA 8 cut(s) 55, 247, 285, 316, 588, 738, 777, 826
TasI AATT 9 cut(s) 35, 51, 159, 336, 356, 566, 740, 989, 1122
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 1178
TfiI GAWTC 6 cut(s) 64, 108, 536, 703, 823, 878
Tru1I TTAA 6 cut(s) 38, 158, 216, 294, 744, 936
Tru9I TTAA 6 cut(s) 38, 158, 216, 294, 744, 936
TscAI CASTG 3 cut(s) 317, 878, 1039
TseFI GTSAC 2 cut(s) 712, 1034
TseI GCWGC 3 cut(s) 70, 73, 1172
Tsp45I GTSAC 2 cut(s) 712, 1034
TspDTI ATGAA 3 cut(s) 150, 543, 882
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 3 cut(s) 317, 878, 1039
VpaK11BI GGWCC 2 cut(s) 193, 1099
VspI ATTAAT 1 cut(s) 38
XapI RAATTY 3 cut(s) 356, 566, 740
XceI RCATGY 1 cut(s) 775
XmaJI CCTAGG 1 cut(s) 1189
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 4 cut(s) 464, 942, 1190, 1237
ZrmI AGTACT 1 cut(s) 278
Zsp2I ATGCAT 1 cut(s) 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.