RLG00000001520

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000351
Physical Location & Seq
Reverse (-)
16762613 .. 16763407
795 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001520

Sequence Viewer

Length: 795 bp
ATGACGAAAAAGTTGGATCTGAGTAGTGAAAAGTTTGTAGAGATGTTGGTTGTTGATGGTTTCTTTATTATTGAACTCTTCCGCAAAATGATAGGAGACATGCTCAGAGGCGTGGATGATCCTCTATTCAATAGGTTAGGGATGTTGTCAATAGTACAAAATGACTTGCTTCTACTAGAAAACCAACTGCCTTGGAGAGTTCTTGACTGCTTATTCCATCAAGTACCTGGTGGAAATTGCAAGTCCGTTTGGGAGCTTACTCAAAGGGTCCTTCCGAGTTGGAGAGGTTTAGAATATTTTGTTTCTCATGTTCCAAATACATTGCAAAGCAGACATTTACTCGACACTCTTAGAATCCTTTCGGTTGAATTTGAATCGGACAAGAACGAGAAGGCTTGTCCATTTCGGGTGCGGATCCCCTTTGCGACAGAGCTTCTCCAAGTCGGAGTCAAATTTAGACGTAAAAGAGGTTTCGACAGCATACTCAACATAACCTTGCTCGATGGAGTGATAGAGATTGCACCAATAACTTTGGACGCCGAAAAATCTGTCTTCAGAAACCTCATAGCTTTGGAAGAGTATGAACCAAGGCACCATAAGTATCAAATTACCTCTTATGCCAGGGTCATGCATGACCTTATTAAATCTAGCAAAGATGTGGAGTTTCTCATGCAAAAAGGCATTATTAACACCATTAGTCTGCGAAAGGAGGACATAGTCAACACCATTCTTGATGATAGTAATACGGTCTCCTCTTGTTCCTCTATCGTGTTACTTTCTGCCGGAGTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

265

Amino Acids

30.29

Weight (kDa)

6.32

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 4 - 239 1.9e-50 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 591
AciI CCGC 2 cut(s) 82, 412
AclWI GGATC 4 cut(s) 24, 113, 409, 422
AcsI RAATTY 2 cut(s) 368, 452
AcuI CTGAAG 1 cut(s) 538
AcyI GRCGYC 1 cut(s) 537
AfaI GTAC 2 cut(s) 156, 225
AgsI TTSAA 4 cut(s) 74, 130, 368, 374
AjnI CCWGG 2 cut(s) 226, 620
AluBI AGCT 3 cut(s) 256, 433, 569
AluI AGCT 3 cut(s) 256, 433, 569
Alw26I GTCTC 2 cut(s) 90, 754
AlwI GGATC 4 cut(s) 24, 113, 409, 422
ApoI RAATTY 2 cut(s) 368, 452
ArsI GACNNNNNNTTYG 2 cut(s) 534, 566
Asp700I GAANNNNTTC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 268
AvaII GGWCC 1 cut(s) 268
BamHI GGATCC 1 cut(s) 414
BanI GGYRCC 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 544
BccI CCATC 3 cut(s) 50, 225, 497
BciT130I CCWGG 2 cut(s) 228, 622
BcoDI GTCTC 2 cut(s) 90, 754
BfaI CTAG 2 cut(s) 176, 648
Bme1390I CCNGG 2 cut(s) 228, 622
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 3 cut(s) 269, 416, 593
BmrFI CCNGG 2 cut(s) 228, 622
BpiI GAAGAC 1 cut(s) 544
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BsaHI GRCGYC 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 754
BsaJI CCNNGG 3 cut(s) 191, 587, 621
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 2 cut(s) 228, 622
BseDI CCNNGG 3 cut(s) 191, 587, 621
BseGI GGATG 2 cut(s) 121, 147
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 2 cut(s) 11, 118
BseRI GAGGAG 1 cut(s) 742
BshNI GGYRCC 1 cut(s) 591
BsiSI CCGG 1 cut(s) 783
BsmAI GTCTC 2 cut(s) 90, 754
Bso31I GGTCTC 1 cut(s) 754
Bsp143I GATC 3 cut(s) 16, 118, 414
BspACI CCGC 2 cut(s) 82, 412
BspCNI CTCAG 2 cut(s) 12, 117
BspLI GGNNCC 3 cut(s) 269, 416, 593
BspPI GGATC 4 cut(s) 24, 113, 409, 422
BspT107I GGYRCC 1 cut(s) 591
BspTNI GGTCTC 1 cut(s) 754
BsrDI GCAATG 1 cut(s) 320
BssECI CCNNGG 3 cut(s) 191, 587, 621
BssMI GATC 3 cut(s) 16, 118, 414
BssNI GRCGYC 1 cut(s) 537
BssT1I CCWWGG 2 cut(s) 191, 587
Bst2UI CCWGG 2 cut(s) 228, 622
Bst4CI ACNGT 1 cut(s) 748
Bst6I CTCTTC 2 cut(s) 83, 570
BstACI GRCGYC 1 cut(s) 537
BstDEI CTNAG 3 cut(s) 20, 104, 350
BstF5I GGATG 2 cut(s) 121, 147
BstKTI GATC 3 cut(s) 19, 121, 417
BstMAI GTCTC 2 cut(s) 90, 754
BstMBI GATC 3 cut(s) 16, 118, 414
BstNI CCWGG 2 cut(s) 228, 622
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 2 cut(s) 226, 620
BstV2I GAAGAC 1 cut(s) 544
BstX2I RGATCY 2 cut(s) 16, 414
BstYI RGATCY 2 cut(s) 16, 414
BtsCI GGATG 2 cut(s) 121, 147
Cfr13I GGNCC 1 cut(s) 268
CseI GACGC 1 cut(s) 545
CsiI ACCWGGT 1 cut(s) 226
Csp6I GTAC 2 cut(s) 155, 224
CviAII CATG 5 cut(s) 100, 308, 628, 632, 670
CviJI RGCY 4 cut(s) 256, 395, 433, 569
CviKI_1 RGCY 4 cut(s) 256, 395, 433, 569
CviQI GTAC 2 cut(s) 155, 224
DdeI CTNAG 3 cut(s) 20, 104, 350
DpnI GATC 3 cut(s) 18, 120, 416
DpnII GATC 3 cut(s) 16, 118, 414
Eam1104I CTCTTC 2 cut(s) 83, 570
EarI CTCTTC 2 cut(s) 83, 570
Eco130I CCWWGG 2 cut(s) 191, 587
Eco31I GGTCTC 1 cut(s) 754
Eco47I GGWCC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 538
EcoO109I RGGNCCY 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 226, 620
EcoT14I CCWWGG 2 cut(s) 191, 587
EcoT22I ATGCAT 1 cut(s) 633
ErhI CCWWGG 2 cut(s) 191, 587
FaeI CATG 5 cut(s) 103, 311, 631, 635, 673
FatI CATG 5 cut(s) 99, 307, 627, 631, 669
FokI GGATG 2 cut(s) 128, 154
FspBI CTAG 2 cut(s) 176, 648
HapII CCGG 1 cut(s) 783
HgaI GACGC 1 cut(s) 545
Hin1I GRCGYC 1 cut(s) 537
Hin1II CATG 5 cut(s) 103, 311, 631, 635, 673
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 3 cut(s) 354, 374, 447
HpaII CCGG 1 cut(s) 783
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 6 cut(s) 21, 107, 276, 379, 446, 557
Hpy188III TCNNGA 2 cut(s) 203, 731
Hpy8I GTNNAC 1 cut(s) 721
HpyAV CCTTC 2 cut(s) 281, 385
HpyCH4III ACNGT 1 cut(s) 748
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 5 cut(s) 240, 325, 521, 631, 673
HpyF3I CTNAG 3 cut(s) 20, 104, 350
HpySE526I ACGT 1 cut(s) 460
Hsp92I GRCGYC 1 cut(s) 537
Hsp92II CATG 5 cut(s) 103, 311, 631, 635, 673
Kzo9I GATC 3 cut(s) 16, 118, 414
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 4 cut(s) 213, 240, 607, 634
MabI ACCWGGT 1 cut(s) 226
MaeI CTAG 2 cut(s) 176, 648
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 1 cut(s) 771
MalI GATC 3 cut(s) 18, 120, 416
MboI GATC 3 cut(s) 16, 118, 414
MboII GAAGA 3 cut(s) 70, 544, 587
MflI RGATCY 2 cut(s) 16, 414
MluCI AATT 4 cut(s) 235, 368, 452, 606
MlyI GAGTC 1 cut(s) 456
MmeI TCCRAC 2 cut(s) 260, 424
MnlI CCTC 9 cut(s) 101, 132, 278, 461, 572, 622, 703, 763, 772
Mph1103I ATGCAT 1 cut(s) 633
MroXI GAANNNNTTC 1 cut(s) 358
MseI TTAA 2 cut(s) 642, 687
MspI CCGG 1 cut(s) 783
MspR9I CCNGG 2 cut(s) 228, 622
MvaI CCWGG 2 cut(s) 228, 622
NdeII GATC 3 cut(s) 16, 118, 414
NlaIII CATG 5 cut(s) 103, 311, 631, 635, 673
NlaIV GGNNCC 3 cut(s) 269, 416, 593
NsiI ATGCAT 1 cut(s) 633
NspI RCATGY 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 358
PfeI GAWTC 2 cut(s) 354, 374
PflFI GACNNNGTC 1 cut(s) 716
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
PpuMI RGGWCCY 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 268
Psp6I CCWGG 2 cut(s) 226, 620
PspGI CCWGG 2 cut(s) 226, 620
PspN4I GGNNCC 3 cut(s) 269, 416, 593
PspPI GGNCC 1 cut(s) 268
PspPPI RGGWCCY 1 cut(s) 268
PsuI RGATCY 2 cut(s) 16, 414
PsyI GACNNNGTC 1 cut(s) 716
RsaI GTAC 2 cut(s) 156, 225
RsaNI GTAC 2 cut(s) 155, 224
SaqAI TTAA 2 cut(s) 642, 687
Sau3AI GATC 3 cut(s) 16, 118, 414
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 456
ScrFI CCNGG 2 cut(s) 228, 622
SexAI ACCWGGT 1 cut(s) 226
SinI GGWCC 1 cut(s) 268
Sse9I AATT 4 cut(s) 235, 368, 452, 606
SsiI CCGC 2 cut(s) 82, 412
SspI AATATT 1 cut(s) 296
SspMI CTAG 2 cut(s) 176, 648
StyD4I CCNGG 2 cut(s) 226, 620
StyI CCWWGG 2 cut(s) 191, 587
TaaI ACNGT 1 cut(s) 748
TaiI ACGT 1 cut(s) 463
TaqI TCGA 3 cut(s) 342, 474, 501
TasI AATT 4 cut(s) 235, 368, 452, 606
TatI WGTACW 1 cut(s) 154
TfiI GAWTC 2 cut(s) 354, 374
Tru1I TTAA 2 cut(s) 642, 687
Tru9I TTAA 2 cut(s) 642, 687
TspDTI ATGAA 1 cut(s) 597
TspGWI ACGGA 1 cut(s) 235
Tth111I GACNNNGTC 1 cut(s) 716
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 2 cut(s) 368, 452
XceI RCATGY 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 358
XspI CTAG 2 cut(s) 176, 648
Zsp2I ATGCAT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.