RchiOBHm_Chr7g0229251

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000351
Physical Location & Seq
Forward (+)
52738173 .. 52738877
705 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20536

Sequence Viewer

Length: 705 bp
ATGGAAAGAATGAAACTATGGTACCTGCACAACCTCCTTATTCGAAAAGCCACTCCCGAGACCAACATGGAACACATTGTTGAAAAAATTAGGAGTATGGAGGAGTATTGTTGTGATTGCTATGACGAAAAAATTGATCTGAGTAGTGCAAAGTTTGTAGAGATGTTGGTAGTTGATGGTTTCTTTATTATTGAACTCTTCCGCAAAATGATAGGAGACATGCCCAGAGGCGTGGATGATCCTCTATTCAATAGGTCAGGGATGTTGTCTATAGTACAAAATGACTTGCTTCTACTAGAAAACCAACTGCCTTGGAGAGTTCTTGACTGCTTATTCCATCAAGTACCTGGTGGAAAATGCAAGTCCCTTTGGGAGCTTACTCAAAGGATCCTTCCGAGTTGGAGAGGTTTAGAGTATTTTGTTTCTCATGTTCCAAATACATTGCAAAGCAGACATTTACTCGACACTCTTAGAATCCTTTCAGTTGAATTTGAATCGGACAAGAACGAGAAGGTTTGTCCATTTCGGGTGCGGATCCCTTCTGCGACAGAGCTTCTTCAAGTCGGAGTCAAATTTAGACGTAAAAGAGGTTTCGACAGCATACTCAACATAACCTTGCTCGATGGAGTGATGGAGATTGCACCAATAACTTTGGACGCCGAAAAATCTGTCTTCAGAAACCTCATAGCCCTTGGAAGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

234

Amino Acids

27.26

Weight (kDa)

6.54

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 231 1.2e-48 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 33
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AciI CCGC 2 cut(s) 202, 532
AclWI GGATC 5 cut(s) 233, 382, 395, 529, 542
AcsI RAATTY 2 cut(s) 488, 572
AcuI CTGAAG 1 cut(s) 658
AcyI GRCGYC 1 cut(s) 657
AfaI GTAC 3 cut(s) 23, 276, 345
AgsI TTSAA 6 cut(s) 83, 194, 250, 488, 494, 560
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 2 cut(s) 376, 553
AluI AGCT 2 cut(s) 376, 553
Alw26I GTCTC 2 cut(s) 53, 210
AlwI GGATC 5 cut(s) 233, 382, 395, 529, 542
Ama87I CYCGRG 1 cut(s) 56
ApoI RAATTY 2 cut(s) 488, 572
ArsI GACNNNNNNTTYG 2 cut(s) 654, 686
Asp700I GAANNNNTTC 1 cut(s) 478
Asp718I GGTACC 1 cut(s) 21
AsuII TTCGAA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 56
BaeI ACNNNNGTAYC 1 cut(s) 38
BamHI GGATCC 2 cut(s) 387, 534
BanI GGYRCC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 664
BccI CCATC 4 cut(s) 170, 345, 617, 625
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 53, 210
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 348
BmeT110I CYCGRG 1 cut(s) 56
BmiI GGNNCC 3 cut(s) 23, 389, 536
BmrFI CCNGG 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 664
Bpu14I TTCGAA 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 311, 691
Bse3DI GCAATG 1 cut(s) 440
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 311, 691
BseGI GGATG 2 cut(s) 241, 267
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 349
BsmAI GTCTC 2 cut(s) 53, 210
BsmFI GGGAC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 43
Bsp143I GATC 4 cut(s) 136, 238, 387, 534
BspACI CCGC 2 cut(s) 202, 532
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 23, 389, 536
BspMI ACCTGC 1 cut(s) 33
BspPI GGATC 5 cut(s) 233, 382, 395, 529, 542
BspT104I TTCGAA 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 440
BssECI CCNNGG 2 cut(s) 311, 691
BssMI GATC 4 cut(s) 136, 238, 387, 534
BssNI GRCGYC 1 cut(s) 657
BssT1I CCWWGG 2 cut(s) 311, 691
Bst2UI CCWGG 1 cut(s) 348
Bst6I CTCTTC 2 cut(s) 203, 691
BstACI GRCGYC 1 cut(s) 657
BstBI TTCGAA 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 140, 470
BstF5I GGATG 2 cut(s) 241, 267
BstKTI GATC 4 cut(s) 139, 241, 390, 537
BstMAI GTCTC 2 cut(s) 53, 210
BstMBI GATC 4 cut(s) 136, 238, 387, 534
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 664
BstX2I RGATCY 2 cut(s) 387, 534
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 2 cut(s) 387, 534
BtsCI GGATG 2 cut(s) 241, 267
BveI ACCTGC 1 cut(s) 33
CseI GACGC 1 cut(s) 665
CsiI ACCWGGT 1 cut(s) 346
Csp6I GTAC 3 cut(s) 22, 275, 344
CviAII CATG 3 cut(s) 67, 220, 428
CviJI RGCY 4 cut(s) 50, 376, 553, 689
CviKI_1 RGCY 4 cut(s) 50, 376, 553, 689
CviQI GTAC 3 cut(s) 22, 275, 344
DdeI CTNAG 2 cut(s) 140, 470
DpnI GATC 4 cut(s) 138, 240, 389, 536
DpnII GATC 4 cut(s) 136, 238, 387, 534
Eam1104I CTCTTC 2 cut(s) 203, 691
EarI CTCTTC 2 cut(s) 203, 691
Eco130I CCWWGG 2 cut(s) 311, 691
Eco31I GGTCTC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 658
Eco88I CYCGRG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 2 cut(s) 311, 691
ErhI CCWWGG 2 cut(s) 311, 691
FaeI CATG 3 cut(s) 70, 223, 431
FaqI GGGAC 1 cut(s) 349
FatI CATG 3 cut(s) 66, 219, 427
FokI GGATG 2 cut(s) 248, 274
FspBI CTAG 1 cut(s) 296
HgaI GACGC 1 cut(s) 665
Hin1I GRCGYC 1 cut(s) 657
Hin1II CATG 3 cut(s) 70, 223, 431
HinfI GANTC 3 cut(s) 474, 494, 567
Hpy188I TCNGA 5 cut(s) 141, 396, 499, 566, 677
Hpy188III TCNNGA 2 cut(s) 56, 323
HpyAV CCTTC 3 cut(s) 401, 505, 549
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 5 cut(s) 28, 149, 360, 445, 641
HpyF3I CTNAG 2 cut(s) 140, 470
HpySE526I ACGT 1 cut(s) 580
Hsp92I GRCGYC 1 cut(s) 657
Hsp92II CATG 3 cut(s) 70, 223, 431
KpnI GGTACC 1 cut(s) 25
Kzo9I GATC 4 cut(s) 136, 238, 387, 534
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 5 cut(s) 38, 238, 243, 333, 360
MabI ACCWGGT 1 cut(s) 346
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 580
MalI GATC 4 cut(s) 138, 240, 389, 536
MboI GATC 4 cut(s) 136, 238, 387, 534
MboII GAAGA 3 cut(s) 190, 548, 664
MflI RGATCY 2 cut(s) 387, 534
MluCI AATT 4 cut(s) 87, 132, 488, 572
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 2 cut(s) 380, 544
MnlI CCTC 7 cut(s) 44, 94, 221, 252, 398, 581, 692
MroXI GAANNNNTTC 1 cut(s) 478
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
NdeII GATC 4 cut(s) 136, 238, 387, 534
NlaIII CATG 3 cut(s) 70, 223, 431
NlaIV GGNNCC 3 cut(s) 23, 389, 536
NspI RCATGY 1 cut(s) 223
NspV TTCGAA 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 2 cut(s) 474, 494
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 3 cut(s) 23, 389, 536
PsuI RGATCY 2 cut(s) 387, 534
RsaI GTAC 3 cut(s) 23, 276, 345
RsaNI GTAC 3 cut(s) 22, 275, 344
Sau3AI GATC 4 cut(s) 136, 238, 387, 534
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 1 cut(s) 348
SexAI ACCWGGT 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 270
SfuI TTCGAA 1 cut(s) 43
Sse9I AATT 4 cut(s) 87, 132, 488, 572
SsiI CCGC 2 cut(s) 202, 532
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 2 cut(s) 311, 691
TaiI ACGT 1 cut(s) 583
TaqI TCGA 4 cut(s) 43, 462, 594, 621
TasI AATT 4 cut(s) 87, 132, 488, 572
TatI WGTACW 1 cut(s) 274
TfiI GAWTC 2 cut(s) 474, 494
TspDTI ATGAA 1 cut(s) 26
XapI RAATTY 2 cut(s) 488, 572
XceI RCATGY 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.