Rw0G001890

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00060
OG0000351
Physical Location & Seq
Reverse (-)
60923 .. 62357
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001890.1

Sequence Viewer

Length: 1347 bp
ATGAAAGAGGACGACTACTACTGTTTCAAAGCTAGAAAAGAATTAATTGCAGAAGAGAATGGGATTGCAACAAATAATGTGAATAGCCAAACTTTGAGTGAATATATTAGAAATGAAGATCAAGTCATAGCATACTCCATTCTAGGAAAACTTCGTCCGCAAGCTCCATCACCACCTAGTGCTTGCATATATAGAATCCCCGATCTACAACTACAAAAGAGGCTGCACAAAAAGGATTTTGTTCCGAGTTTAGTTTCAATTGGACCATTTCACCATGGAAAAAAGAACCTGCAAGCAATGGAAAGAATGAAACTATGGTACCTGCACAACCTCCTTATTCGAAAAGCCACTCCCGAGACCAACATGGAACACATTGTTGAAAAAATTAGGAGTATGGAGGAGTATTGTCATGATTGCTATGACGAAAAAATTGATCTGAGTAGTGCAAAGTTTGTAGAGATGTTGGTAGTTGATGGTTTCTTTATTATTGAACTCTTCCGCAAAATGATAGGAGACATGCCCAGAGGCGTGGATGATCCTCTATTCAATAGGTCAGGGATGTTGTCGATAGTACAAAATGACTTGCTTCTACTAGAAAACCAACTGCCTTGGAGAGTTCTTGACTGCTTATTCCATCAAGTACCTGGTGGAAAATGCAGGTCCCTTTGGGAGCTTACTCAAAGGATCCTTCCGAGTTGGAGAGGTTTAGAATATTTTGTTTCTCATGTTCCAAATACATTGCAAAGCAGACATTTACTCGACACTCTTAGAATCCTTTCAGTTGAATTTGAATCGGACAAGAACGAGAAGGTTTGTCCATTTCGGGTGCGGATCCCCTCTGCGACAGAGCTTCTCCAAGTCGGAGTCAAATTTAGACGTAAAAGAGGTTTCAACAGCATACTCAACATAACCATGCTCGATGGAGTGATGGAGATTGCACCAATAACTTTGGACGCCGAAAAATATGTCTTCAGAAACCTCATAGCCTTGGAAGAATATGAACCAAGGCACCATAAGTATCAAATTACCTCTTATGCCGGGGTCATGCATGACCTTATTAAATCTAGCAAAGATTTGGATCTGCGAAAGGAGGACATAGTCTATTTCTTCAACACCATTCTTGATGACAGTAATACAGTCTCCTCTTGTTCCTCTATCGTGTTACTATCCGCCGGAGTGACCGAGTATTATGATCACCGTTGGCTACGAAGATGGATAGCGTCAATCAAGCGTGATTACTTGTACAATCCATCATCAATATGGTCAATCTCTAATGCAATTGTGTTTATAACAATTTTGACCATCATACAAACCGTGTATTCAGTTCTCTCTTACTACAAGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

448

Amino Acids

52.23

Weight (kDa)

7.62

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 63 - 430 1.4e-78 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1289
Acc36I ACCTGC 3 cut(s) 297, 330, 648
Acc65I GGTACC 1 cut(s) 318
AccB1I GGYRCC 2 cut(s) 318, 1008
AciI CCGC 4 cut(s) 158, 499, 829, 1170
AclWI GGATC 6 cut(s) 530, 679, 692, 826, 839, 1086
AcsI RAATTY 2 cut(s) 785, 869
AcuI CTGAAG 1 cut(s) 955
AcyI GRCGYC 1 cut(s) 954
AdeI CACNNNGTG 1 cut(s) 179
AfaI GTAC 4 cut(s) 320, 573, 642, 1244
AgsI TTSAA 9 cut(s) 28, 258, 380, 491, 547, 785, 791, 892, 1111
AjnI CCWGG 1 cut(s) 643
AluBI AGCT 4 cut(s) 32, 164, 673, 850
AluI AGCT 4 cut(s) 32, 164, 673, 850
Alw26I GTCTC 3 cut(s) 350, 507, 1144
AlwI GGATC 6 cut(s) 530, 679, 692, 826, 839, 1086
Ama87I CYCGRG 1 cut(s) 353
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 2 cut(s) 785, 869
ArsI GACNNNNNNTTYG 2 cut(s) 951, 983
AseI ATTAAT 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 775
Asp718I GGTACC 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 263, 660
AsuC2I CCSGG 1 cut(s) 1039
AsuHPI GGTGA 3 cut(s) 162, 263, 1187
AsuII TTCGAA 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 2 cut(s) 263, 660
BaeI ACNNNNGTAYC 2 cut(s) 302, 335
BamHI GGATCC 2 cut(s) 684, 831
BanI GGYRCC 2 cut(s) 318, 1008
BbsI GAAGAC 1 cut(s) 961
BbvI GCAGC 1 cut(s) 210
BccI CCATC 8 cut(s) 175, 467, 642, 914, 922, 1206, 1258, 1310
BciT130I CCWGG 1 cut(s) 645
BclI TGATCA 1 cut(s) 1192
BcnI CCSGG 1 cut(s) 1039
BcoDI GTCTC 3 cut(s) 350, 507, 1144
BfaI CTAG 5 cut(s) 33, 143, 177, 593, 1065
BfuAI ACCTGC 3 cut(s) 297, 330, 648
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme1390I CCNGG 2 cut(s) 645, 1039
Bme18I GGWCC 2 cut(s) 263, 660
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 263, 660
BmiI GGNNCC 5 cut(s) 320, 662, 686, 833, 1010
BmrFI CCNGG 2 cut(s) 645, 1039
BpiI GAAGAC 1 cut(s) 961
Bpu14I TTCGAA 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 1039
BsaBI GATNNNNATC 1 cut(s) 1077
BsaHI GRCGYC 1 cut(s) 954
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 5 cut(s) 274, 608, 987, 1004, 1038
Bse3DI GCAATG 2 cut(s) 303, 737
Bse8I GATNNNNATC 1 cut(s) 1077
BseBI CCWGG 1 cut(s) 645
BseDI CCNNGG 5 cut(s) 274, 608, 987, 1004, 1038
BseGI GGATG 2 cut(s) 538, 564
BseJI GATNNNNATC 1 cut(s) 1077
BseMI GCAATG 2 cut(s) 303, 737
BseMII CTCAG 1 cut(s) 428
BseRI GAGGAG 2 cut(s) 413, 1132
BseXI GCAGC 1 cut(s) 210
BsgI GTGCAG 2 cut(s) 209, 308
BshNI GGYRCC 2 cut(s) 318, 1008
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 2 cut(s) 1038, 1173
BslFI GGGAC 1 cut(s) 646
BsmAI GTCTC 3 cut(s) 350, 507, 1144
BsmFI GGGAC 1 cut(s) 646
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 340
Bsp1407I TGTACA 1 cut(s) 1242
Bsp143I GATC 8 cut(s) 118, 202, 433, 535, 684, 831, 1078, 1192
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 4 cut(s) 158, 499, 829, 1170
BspCNI CTCAG 1 cut(s) 429
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 5 cut(s) 320, 662, 686, 833, 1010
BspMI ACCTGC 3 cut(s) 297, 330, 648
BspPI GGATC 6 cut(s) 530, 679, 692, 826, 839, 1086
BspT104I TTCGAA 1 cut(s) 340
BspT107I GGYRCC 2 cut(s) 318, 1008
BspTNI GGTCTC 1 cut(s) 350
BsrDI GCAATG 2 cut(s) 303, 737
BsrGI TGTACA 1 cut(s) 1242
BssECI CCNNGG 5 cut(s) 274, 608, 987, 1004, 1038
BssMI GATC 8 cut(s) 118, 202, 433, 535, 684, 831, 1078, 1192
BssNI GRCGYC 1 cut(s) 954
BssT1I CCWWGG 4 cut(s) 274, 608, 987, 1004
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 5 cut(s) 23, 1130, 1138, 1199, 1315
Bst6I CTCTTC 2 cut(s) 48, 500
BstACI GRCGYC 1 cut(s) 954
BstAUI TGTACA 1 cut(s) 1242
BstBI TTCGAA 1 cut(s) 340
BstC8I GCNNGC 3 cut(s) 162, 184, 294
BstDEI CTNAG 2 cut(s) 437, 767
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 2 cut(s) 538, 564
BstKTI GATC 8 cut(s) 121, 205, 436, 538, 687, 834, 1081, 1195
BstMAI GTCTC 3 cut(s) 350, 507, 1144
BstMBI GATC 8 cut(s) 118, 202, 433, 535, 684, 831, 1078, 1192
BstNI CCWGG 1 cut(s) 645
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 2 cut(s) 643, 1037
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 961
BstX2I RGATCY 3 cut(s) 684, 831, 1078
BstXI CCANNNNNNTGG 1 cut(s) 529
BstYI RGATCY 3 cut(s) 684, 831, 1078
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 2 cut(s) 538, 564
BveI ACCTGC 3 cut(s) 297, 330, 648
Cac8I GCNNGC 3 cut(s) 162, 184, 294
CciI TCATGA 1 cut(s) 409
Cfr13I GGNCC 2 cut(s) 263, 660
CseI GACGC 2 cut(s) 962, 1209
CsiI ACCWGGT 1 cut(s) 643
Csp6I GTAC 4 cut(s) 319, 572, 641, 1243
CviAII CATG 8 cut(s) 275, 364, 410, 517, 725, 913, 1045, 1049
CviJI RGCY 9 cut(s) 32, 87, 164, 223, 347, 673, 850, 986, 1204
CviKI_1 RGCY 9 cut(s) 32, 87, 164, 223, 347, 673, 850, 986, 1204
CviQI GTAC 4 cut(s) 319, 572, 641, 1243
DdeI CTNAG 2 cut(s) 437, 767
DpnI GATC 8 cut(s) 120, 204, 435, 537, 686, 833, 1080, 1194
DpnII GATC 8 cut(s) 118, 202, 433, 535, 684, 831, 1078, 1192
DraIII CACNNNGTG 1 cut(s) 179
Eam1104I CTCTTC 2 cut(s) 48, 500
EarI CTCTTC 2 cut(s) 48, 500
EciI GGCGGA 1 cut(s) 1159
Eco130I CCWWGG 4 cut(s) 274, 608, 987, 1004
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 263, 660
Eco57I CTGAAG 1 cut(s) 955
Eco88I CYCGRG 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 660
EcoRII CCWGG 1 cut(s) 643
EcoT14I CCWWGG 4 cut(s) 274, 608, 987, 1004
EcoT22I ATGCAT 1 cut(s) 1050
ErhI CCWWGG 4 cut(s) 274, 608, 987, 1004
FaeI CATG 8 cut(s) 278, 367, 413, 520, 728, 916, 1048, 1052
FaqI GGGAC 1 cut(s) 646
FatI CATG 8 cut(s) 274, 363, 409, 516, 724, 912, 1044, 1048
FbaI TGATCA 1 cut(s) 1192
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 2 cut(s) 545, 571
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 5 cut(s) 33, 143, 177, 593, 1065
GluI GCNGC 1 cut(s) 224
HapII CCGG 2 cut(s) 1038, 1173
HgaI GACGC 2 cut(s) 962, 1209
Hin1I GRCGYC 1 cut(s) 954
Hin1II CATG 8 cut(s) 278, 367, 413, 520, 728, 916, 1048, 1052
HinfI GANTC 4 cut(s) 195, 771, 791, 864
HpaII CCGG 2 cut(s) 1038, 1173
HphI GGTGA 3 cut(s) 162, 263, 1187
Hpy188I TCNGA 6 cut(s) 246, 438, 693, 796, 863, 974
Hpy188III TCNNGA 4 cut(s) 353, 410, 620, 1121
HpyAV CCTTC 2 cut(s) 698, 802
HpyCH4III ACNGT 5 cut(s) 23, 1130, 1138, 1199, 1315
HpyCH4IV ACGT 1 cut(s) 877
HpyF3I CTNAG 2 cut(s) 437, 767
HpySE526I ACGT 1 cut(s) 877
Hsp92I GRCGYC 1 cut(s) 954
Hsp92II CATG 8 cut(s) 278, 367, 413, 520, 728, 916, 1048, 1052
KpnI GGTACC 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 1192
Kzo9I GATC 8 cut(s) 118, 202, 433, 535, 684, 831, 1078, 1192
LmnI GCTCC 2 cut(s) 169, 670
LpnPI CCDG 9 cut(s) 302, 335, 535, 540, 630, 643, 657, 1051, 1186
Lsp1109I GCAGC 1 cut(s) 210
MabI ACCWGGT 1 cut(s) 643
MaeI CTAG 5 cut(s) 33, 143, 177, 593, 1065
MaeII ACGT 1 cut(s) 877
MaeIII GTNAC 2 cut(s) 1161, 1177
MalI GATC 8 cut(s) 120, 204, 435, 537, 686, 833, 1080, 1194
MboI GATC 8 cut(s) 118, 202, 433, 535, 684, 831, 1078, 1192
MboII GAAGA 7 cut(s) 65, 128, 487, 961, 1004, 1099, 1221
MfeI CAATTG 2 cut(s) 258, 1278
MflI RGATCY 3 cut(s) 684, 831, 1078
MlyI GAGTC 1 cut(s) 873
MmeI TCCRAC 2 cut(s) 677, 841
Mph1103I ATGCAT 1 cut(s) 1050
MroXI GAANNNNTTC 1 cut(s) 775
MseI TTAA 2 cut(s) 44, 1059
MslI CAYNNNNRTG 2 cut(s) 911, 1258
MspI CCGG 2 cut(s) 1038, 1173
MspR9I CCNGG 2 cut(s) 645, 1039
MunI CAATTG 2 cut(s) 258, 1278
MvaI CCWGG 1 cut(s) 645
NciI CCSGG 1 cut(s) 1039
NcoI CCATGG 1 cut(s) 274
NdeII GATC 8 cut(s) 118, 202, 433, 535, 684, 831, 1078, 1192
NlaIII CATG 8 cut(s) 278, 367, 413, 520, 728, 916, 1048, 1052
NlaIV GGNNCC 5 cut(s) 320, 662, 686, 833, 1010
NmuCI GTSAC 1 cut(s) 1177
NsiI ATGCAT 1 cut(s) 1050
NspI RCATGY 1 cut(s) 520
NspV TTCGAA 1 cut(s) 340
PagI TCATGA 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 775
PfeI GAWTC 3 cut(s) 195, 771, 791
PflFI GACNNNGTC 1 cut(s) 1097
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 1 cut(s) 872
PpsI GAGTC 1 cut(s) 872
PpuMI RGGWCCY 1 cut(s) 660
PshBI ATTAAT 1 cut(s) 44
PsiI TTATAA 1 cut(s) 1289
Psp5II RGGWCCY 1 cut(s) 660
Psp6I CCWGG 1 cut(s) 643
PspGI CCWGG 1 cut(s) 643
PspN4I GGNNCC 5 cut(s) 320, 662, 686, 833, 1010
PspPI GGNCC 2 cut(s) 263, 660
PspPPI RGGWCCY 1 cut(s) 660
PsuI RGATCY 3 cut(s) 684, 831, 1078
PsyI GACNNNGTC 1 cut(s) 1097
RsaI GTAC 4 cut(s) 320, 573, 642, 1244
RsaNI GTAC 4 cut(s) 319, 572, 641, 1243
RseI CAYNNNNRTG 2 cut(s) 911, 1258
SaqAI TTAA 2 cut(s) 44, 1059
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 8 cut(s) 118, 202, 433, 535, 684, 831, 1078, 1192
Sau96I GGNCC 2 cut(s) 263, 660
SchI GAGTC 1 cut(s) 873
ScrFI CCNGG 2 cut(s) 645, 1039
SexAI ACCWGGT 1 cut(s) 643
SfuI TTCGAA 1 cut(s) 340
SinI GGWCC 2 cut(s) 263, 660
SmiMI CAYNNNNRTG 2 cut(s) 911, 1258
SsiI CCGC 4 cut(s) 158, 499, 829, 1170
SspI AATATT 1 cut(s) 713
SspMI CTAG 5 cut(s) 33, 143, 177, 593, 1065
StyD4I CCNGG 2 cut(s) 643, 1037
StyI CCWWGG 4 cut(s) 274, 608, 987, 1004
TaaI ACNGT 5 cut(s) 23, 1130, 1138, 1199, 1315
TaiI ACGT 1 cut(s) 880
TaqI TCGA 4 cut(s) 340, 566, 759, 918
TaqII GACCGA 1 cut(s) 1196
TatI WGTACW 2 cut(s) 571, 1242
TfiI GAWTC 3 cut(s) 195, 771, 791
Tru1I TTAA 2 cut(s) 44, 1059
Tru9I TTAA 2 cut(s) 44, 1059
TseFI GTSAC 1 cut(s) 1177
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 1177
TspDTI ATGAA 4 cut(s) 17, 129, 323, 1014
Tth111I GACNNNGTC 1 cut(s) 1097
VpaK11BI GGWCC 2 cut(s) 263, 660
VspI ATTAAT 1 cut(s) 44
XapI RAATTY 2 cut(s) 785, 869
XceI RCATGY 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 2 cut(s) 641, 1257
XmnI GAANNNNTTC 1 cut(s) 775
XspI CTAG 5 cut(s) 33, 143, 177, 593, 1065
Zsp2I ATGCAT 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.