Rh2AG570300

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000351
Physical Location & Seq
Forward (+)
80054915 .. 80057675
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG570300.1

Sequence Viewer

Length: 939 bp
ATGAGTAGTCACCAGTTTGTAGAAATGATGGTGGTTGATGGTTGTTTTGTTATTGAGTTCATGCTCGGAAGGACATACAGCAAGATTCTTCGGAATGATCTTCTGTCCCAAAGTTCATGGATGCGCACCCCACTTATATCAGATTTGTTTCTACTGGAAAACCAGTTGCCTTGGTTAGTTCTTGATTGTTTATTCCAATATCTTGTAAAAGAAAATGCTGACGATGAACCTGTTGGAAAGCATAAGTTTCTATCTGAGCTTACTCTCAAATTTTGTCAGTTGCACACCATGCGTTTTCTAAAGCCAAATGATGGAGCATTCGAAATCAGGCATTTACTTGACCACATAAGAATTGGTATAGTTGGACTAGAAAAGCTAACCATCAGTTCACGTCGTTATTTGGTTCCCTCTGTGACAGAACTCCGGCAAATTGGAGTCATATTTAAACGTGGAGACATGTCTTGCCACACACTCAACATAGCCTTCCACAATGGAGTGATGGAGATTCCAGAAATATGTATTGGCAATAATCGATCTCTCTTTATCAACCTCATTGCCCTCGAAGAATGCCAACAAGGCCTCATAGGTTATGCATTTACCTCTTATGCCAGGGTCTTGCATTATATTATTAAATCTAGCAAAGATGCAGAATTTCTCATGCAGAAAGGAATTATACATACCACTTTGAGCAAGGAGGACATAACTTGTCTCTTCAATAGCATTCATGATAACGCAACACCGACCTCTGAATCTGTTGTAATTCTCACCAGGAATGTGCATTTGTATTGTAAGCGTCGTTGGCTCAGGAGATGCCTTATAAGTATCAAACAGGATTATCTATACAATCCATCTTCAGTCTGGTCCCTTTCTAATGCGGTCATCATTATTGTAATTCTCGGCATCACACAAACCATATACACTCCTCTCTTCAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

312

Amino Acids

35.95

Weight (kDa)

8.33

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 3 - 297 4.8e-60 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 818
Acc16I TGCGCA 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 311
AciI CCGC 1 cut(s) 875
AcsI RAATTY 2 cut(s) 269, 650
AcuI CTGAAG 1 cut(s) 837
AfiI CCNNNNNNNGG 1 cut(s) 311
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 2 cut(s) 715, 931
AjiI CACGTC 1 cut(s) 392
AjnI CCWGG 2 cut(s) 608, 767
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AluBI AGCT 2 cut(s) 259, 376
AluI AGCT 2 cut(s) 259, 376
Alw26I GTCTC 2 cut(s) 447, 713
AoxI GGCC 1 cut(s) 577
ApoI RAATTY 2 cut(s) 269, 650
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 861
AsuHPI GGTGA 1 cut(s) 757
AsuII TTCGAA 1 cut(s) 321
AvaII GGWCC 1 cut(s) 861
BccI CCATC 6 cut(s) 22, 32, 305, 389, 493, 856
BciT130I CCWGG 2 cut(s) 610, 769
BcoDI GTCTC 2 cut(s) 447, 713
BfaI CTAG 2 cut(s) 368, 636
BglI GCCNNNNNGGC 1 cut(s) 576
Bme1390I CCNGG 2 cut(s) 610, 769
Bme18I GGWCC 1 cut(s) 861
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 861
BmiI GGNNCC 2 cut(s) 405, 863
BmrFI CCNGG 2 cut(s) 610, 769
BmsI GCATC 4 cut(s) 111, 634, 800, 909
Bpu10I CCTNAGC 1 cut(s) 803
Bpu14I TTCGAA 1 cut(s) 321
Bsa29I ATCGAT 1 cut(s) 532
BsaJI CCNNGG 2 cut(s) 170, 609
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 3 cut(s) 13, 159, 163
Bse3DI GCAATG 1 cut(s) 552
BseBI CCWGG 2 cut(s) 610, 769
BseCI ATCGAT 1 cut(s) 532
BseDI CCNNGG 2 cut(s) 170, 609
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 2 cut(s) 246, 817
BseNI ACTGG 3 cut(s) 13, 159, 163
BseRI GAGGAG 1 cut(s) 912
BshFI GGCC 1 cut(s) 579
BshVI ATCGAT 1 cut(s) 532
BsiSI CCGG 1 cut(s) 424
BslFI GGGAC 2 cut(s) 91, 847
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 2 cut(s) 447, 713
BsmFI GGGAC 2 cut(s) 91, 847
BsmI GAATGC 3 cut(s) 317, 572, 720
BsnI GGCC 1 cut(s) 579
Bsp119I TTCGAA 1 cut(s) 321
Bsp143I GATC 2 cut(s) 97, 533
BspACI CCGC 1 cut(s) 875
BspANI GGCC 1 cut(s) 579
BspCNI CTCAG 2 cut(s) 247, 816
BspDI ATCGAT 1 cut(s) 532
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 2 cut(s) 405, 863
BspT104I TTCGAA 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 552
BsrI ACTGG 3 cut(s) 13, 159, 163
BssECI CCNNGG 2 cut(s) 170, 609
BssMI GATC 2 cut(s) 97, 533
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 2 cut(s) 610, 769
Bst6I CTCTTC 2 cut(s) 716, 932
BstAPI GCANNNNNTGC 1 cut(s) 289
BstBI TTCGAA 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 255, 803
BstF5I GGATG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 100, 536
BstMAI GTCTC 2 cut(s) 447, 713
BstMBI GATC 2 cut(s) 97, 533
BstMWI GCNNNNNNNGC 3 cut(s) 289, 576, 799
BstNI CCWGG 2 cut(s) 610, 769
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 2 cut(s) 608, 767
Bsu15I ATCGAT 1 cut(s) 532
BsuRI GGCC 1 cut(s) 579
BsuTUI ATCGAT 1 cut(s) 532
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 1 cut(s) 126
CciI TCATGA 1 cut(s) 724
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 861
ClaI ATCGAT 1 cut(s) 532
CseI GACGC 1 cut(s) 782
CviAII CATG 6 cut(s) 61, 117, 289, 457, 658, 725
CviJI RGCY 6 cut(s) 259, 304, 376, 482, 579, 802
CviKI_1 RGCY 6 cut(s) 259, 304, 376, 482, 579, 802
DdeI CTNAG 2 cut(s) 255, 803
DpnI GATC 2 cut(s) 99, 535
DpnII GATC 2 cut(s) 97, 533
DraI TTTAAA 1 cut(s) 445
Eam1104I CTCTTC 2 cut(s) 716, 932
EarI CTCTTC 2 cut(s) 716, 932
Eco130I CCWWGG 1 cut(s) 170
Eco147I AGGCCT 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 861
Eco57I CTGAAG 1 cut(s) 837
EcoRII CCWGG 2 cut(s) 608, 767
EcoT14I CCWWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 6 cut(s) 64, 120, 292, 460, 661, 728
FaqI GGGAC 2 cut(s) 91, 847
FatI CATG 6 cut(s) 60, 116, 288, 456, 657, 724
FokI GGATG 1 cut(s) 133
FspAI RTGCGCAY 1 cut(s) 125
FspBI CTAG 2 cut(s) 368, 636
FspI TGCGCA 1 cut(s) 125
GlaI GCGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 579
HapII CCGG 1 cut(s) 424
HgaI GACGC 1 cut(s) 782
HhaI GCGC 1 cut(s) 126
Hin1II CATG 6 cut(s) 64, 120, 292, 460, 661, 728
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 4 cut(s) 85, 435, 505, 749
HpaII CCGG 1 cut(s) 424
HphI GGTGA 1 cut(s) 757
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 5 cut(s) 68, 93, 142, 256, 748
Hpy188III TCNNGA 4 cut(s) 182, 509, 725, 805
Hpy8I GTNNAC 1 cut(s) 389
Hpy99I CGWCG 2 cut(s) 396, 798
HpyAV CCTTC 2 cut(s) 63, 493
HpyCH4IV ACGT 2 cut(s) 391, 448
HpyCH4V TGCA 6 cut(s) 283, 593, 619, 647, 661, 778
HpyF10VI GCNNNNNNNGC 3 cut(s) 289, 576, 799
HpyF3I CTNAG 2 cut(s) 255, 803
HpySE526I ACGT 2 cut(s) 391, 448
Hsp92II CATG 6 cut(s) 64, 120, 292, 460, 661, 728
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 97, 533
LmnI GCTCC 1 cut(s) 314
LweI GCATC 4 cut(s) 111, 634, 800, 909
MaeI CTAG 2 cut(s) 368, 636
MaeII ACGT 2 cut(s) 391, 448
MaeIII GTNAC 2 cut(s) 8, 412
MalI GATC 2 cut(s) 99, 535
MboI GATC 2 cut(s) 97, 533
MboII GAAGA 6 cut(s) 80, 92, 575, 703, 843, 919
MluCI AATT 7 cut(s) 269, 351, 429, 650, 669, 759, 891
MlyI GAGTC 1 cut(s) 444
MmeI TCCRAC 2 cut(s) 214, 343
MnlI CCTC 8 cut(s) 418, 560, 569, 590, 610, 688, 754, 933
Mph1103I ATGCAT 1 cut(s) 595
MseI TTAA 2 cut(s) 444, 630
MspI CCGG 1 cut(s) 424
MspR9I CCNGG 2 cut(s) 610, 769
Mva1269I GAATGC 3 cut(s) 317, 572, 720
MvaI CCWGG 2 cut(s) 610, 769
MwoI GCNNNNNNNGC 3 cut(s) 289, 576, 799
NdeII GATC 2 cut(s) 97, 533
NlaIII CATG 6 cut(s) 64, 120, 292, 460, 661, 728
NlaIV GGNNCC 2 cut(s) 405, 863
NmeAIII GCCGAG 1 cut(s) 876
NmuCI GTSAC 2 cut(s) 8, 412
NsbI TGCGCA 1 cut(s) 125
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 1 cut(s) 460
NspV TTCGAA 1 cut(s) 321
PagI TCATGA 1 cut(s) 724
PceI AGGCCT 1 cut(s) 579
PciI ACATGT 1 cut(s) 456
PctI GAATGC 3 cut(s) 317, 572, 720
PfeI GAWTC 3 cut(s) 85, 505, 749
PflMI CCANNNNNTGG 1 cut(s) 311
PleI GAGTC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 443
PscI ACATGT 1 cut(s) 456
PsiI TTATAA 1 cut(s) 818
Psp6I CCWGG 2 cut(s) 608, 767
PspGI CCWGG 2 cut(s) 608, 767
PspN4I GGNNCC 2 cut(s) 405, 863
PspPI GGNCC 1 cut(s) 861
SaqAI TTAA 2 cut(s) 444, 630
Sau3AI GATC 2 cut(s) 97, 533
Sau96I GGNCC 1 cut(s) 861
SchI GAGTC 1 cut(s) 444
ScrFI CCNGG 2 cut(s) 610, 769
SetI ASST 9 cut(s) 232, 261, 378, 394, 451, 552, 589, 602, 746
SfaNI GCATC 4 cut(s) 111, 634, 800, 909
SfuI TTCGAA 1 cut(s) 321
SinI GGWCC 1 cut(s) 861
Sse9I AATT 7 cut(s) 269, 351, 429, 650, 669, 759, 891
SseBI AGGCCT 1 cut(s) 579
SsiI CCGC 1 cut(s) 875
SspMI CTAG 2 cut(s) 368, 636
StuI AGGCCT 1 cut(s) 579
StyD4I CCNGG 2 cut(s) 608, 767
StyI CCWWGG 1 cut(s) 170
TaiI ACGT 2 cut(s) 394, 451
TaqI TCGA 3 cut(s) 321, 532, 561
TasI AATT 7 cut(s) 269, 351, 429, 650, 669, 759, 891
TfiI GAWTC 3 cut(s) 85, 505, 749
Tru1I TTAA 2 cut(s) 444, 630
Tru9I TTAA 2 cut(s) 444, 630
TseFI GTSAC 2 cut(s) 8, 412
Tsp45I GTSAC 2 cut(s) 8, 412
TspDTI ATGAA 4 cut(s) 49, 105, 240, 713
Van91I CCANNNNNTGG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 861
XapI RAATTY 2 cut(s) 269, 650
XceI RCATGY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 2 cut(s) 350, 855
XspI CTAG 2 cut(s) 368, 636
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.