FvH4_6g39730

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000351
Physical Location & Seq
Reverse (-)
31372310 .. 31374548
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39730.t1

Sequence Viewer

Length: 1374 bp
ATGGCAGAGAGCAAAGTGAAGGAGCACTGCTTGATCGAAATCAGAGAAGGGGAAGAGAGTGTCACAGCAGGAAGCAATGTGAAAAACCAAACTTTGAGTGGTGATCAAAATAAGGAGAATGTAAACATAGCATCATCCATTAGAAAAAAGCTTCTTAGCAAAGCACCATCACCCTCTAGTACTTGCATATACAGAGTCCCAGATGTACTGAAGAAACTTCACGAAAAGGATTTTGTTCCTTGTTTAGTTTCAATTGGACCATTTCACCATGGCACAAAGAAGCTGCAAGCCATGGAACAATTTAAGCTCTGGTATTTGCACCAGCTCCTTGATCGAAAACCAAATCCTGAGACCAACTTGGAGCACATTGTTGAAAAGATCAGAAGCCTGGAAGACTATTCTCGTGAATGCTATAACGAAAAACTTGATGATCTGAGCAGTGAAGCATTTGTAGAAATGATGGTGGTTGATGGTTGCTTTATTCTTGAGTACTACCGCAAAAAAATAGGAGAAGTGCCCACAGACCCGGACGATCCACTGTTCAATATCACTTTAGCAATGTCACCAACACTTACAAGTGACTTGGTTATGCTAGAAAACCAGCTGCCTTGGAGAGTTCTTGACTGTTTATTCCAACTCACAAAACAAGTACCTAATGGAACGTGCAAGTCCTTATCTGAGCTTACTCGCAGTTGTCTCCCGATTAGGGGGCCTGTGTCTGATGATCATCTAGAGCAGACAACGGAAAGCAGACATTTACTTGACAATGTCAGGATTCTGTCTGCTGAACTAGACAAGAAAGAGGAGATTATGCCATTTTGGGACTCTATGCCATCTGCAACCAAACTTCAGCAAATTGGGGTCATGTTTCAACCCAACAGAAATAATATCAACATAAACATAACGTTCGTCGATGGAGTCTTGGAGATTGCACCAATAACTATCCAGGGTGATAATCCTGTCTTTAGAAACCTCATTGCCTTGGAACAGTGTGAATCAGGGCCACATAAGTATCAAATTAGCACTTATGCCAGGGCATTATGTGACCTTATTAAATCTAGCAAAGATGTGGAGTTTCTCAAGCAGAACCAGATTATTCACACCAGTTTGAACAAGGAAGACATAGCCGGTTTCTTCGACGACATTTGCAATGGTTTTGAAACCTCCTCCTGCTGTAAGTCTTTTTGGCAAGTTTCCTCATCAGTGAGACAGTATTATAAACAACACTGGCTACAAAGGTTGATAGTATACATCAAGCATAACTATTTGTACAATCCATCATCAATATGGTCAGTTTCTAATGCAGTTGTCCTTATTATAATTCTTACGGTCTTGCAAACCATATATTCTATTCTCTCTTACTACAAGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

458

Amino Acids

52.32

Weight (kDa)

5.89

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 63 - 440 5.1e-92 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1218, 1319
AccI GTMKAC 1 cut(s) 1248
AciI CCGC 1 cut(s) 496
AclI AACGTT 1 cut(s) 905
AclWI GGATC 1 cut(s) 527
AcuI CTGAAG 2 cut(s) 230, 833
AfaI GTAC 5 cut(s) 181, 207, 491, 651, 1271
AfiI CCNNNNNNNGG 2 cut(s) 706, 707
AgsI TTSAA 6 cut(s) 252, 374, 544, 872, 1111, 1160
AjnI CCWGG 3 cut(s) 387, 945, 1031
AluBI AGCT 6 cut(s) 151, 283, 307, 325, 604, 682
AluI AGCT 6 cut(s) 151, 283, 307, 325, 604, 682
Alw21I GWGCWC 2 cut(s) 27, 366
Alw26I GTCTC 3 cut(s) 344, 701, 1201
AlwI GGATC 1 cut(s) 527
AoxI GGCC 2 cut(s) 710, 1001
ApeKI GCWGC 2 cut(s) 283, 604
AspS9I GGNCC 3 cut(s) 257, 710, 1001
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 5 cut(s) 113, 162, 257, 555, 962
AvaII GGWCC 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 519
BaeI ACNNNNGTAYC 2 cut(s) 995, 1028
BauI CACGAG 1 cut(s) 402
BbsI GAAGAC 2 cut(s) 399, 1125
Bbv12I GWGCWC 2 cut(s) 27, 366
BbvI GCAGC 2 cut(s) 270, 591
BccI CCATC 6 cut(s) 175, 454, 464, 841, 908, 1285
BciT130I CCWGG 3 cut(s) 389, 947, 1033
BclI TGATCA 2 cut(s) 103, 724
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 3 cut(s) 344, 701, 1201
BfaI CTAG 5 cut(s) 177, 593, 731, 791, 1059
BisI GCNGC 2 cut(s) 284, 605
BlsI GCNGC 2 cut(s) 285, 606
BmcAI AGTACT 2 cut(s) 181, 491
Bme1390I CCNGG 4 cut(s) 389, 527, 947, 1033
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 3 cut(s) 257, 710, 1001
BmiI GGNNCC 1 cut(s) 711
BmrFI CCNGG 4 cut(s) 389, 527, 947, 1033
BmsI GCATC 1 cut(s) 140
BpiI GAAGAC 2 cut(s) 399, 1125
BpuEI CTTGAG 2 cut(s) 506, 1064
BpuMI CCSGG 1 cut(s) 527
BsaBI GATNNNNATC 2 cut(s) 38, 726
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 6 cut(s) 268, 291, 608, 946, 981, 1032
Bsc4I CCNNNNNNNGG 2 cut(s) 706, 707
Bse118I RCCGGY 1 cut(s) 1127
Bse1I ACTGG 2 cut(s) 1104, 1232
Bse3DI GCAATG 4 cut(s) 82, 564, 975, 1156
Bse8I GATNNNNATC 2 cut(s) 38, 726
BseBI CCWGG 3 cut(s) 389, 947, 1033
BseDI CCNNGG 6 cut(s) 268, 291, 608, 946, 981, 1032
BseGI GGATG 1 cut(s) 134
BseJI GATNNNNATC 2 cut(s) 38, 726
BseLI CCNNNNNNNGG 2 cut(s) 706, 707
BseMI GCAATG 4 cut(s) 82, 564, 975, 1156
BseMII CTCAG 3 cut(s) 339, 425, 669
BseNI ACTGG 2 cut(s) 1104, 1232
BseRI GAGGAG 2 cut(s) 818, 1156
BseSI GKGCMC 1 cut(s) 519
BseXI GCAGC 2 cut(s) 270, 591
BshFI GGCC 2 cut(s) 712, 1003
BsiHKAI GWGCWC 2 cut(s) 27, 366
BsiSI CCGG 2 cut(s) 527, 1128
BslFI GGGAC 2 cut(s) 182, 836
BslI CCNNNNNNNGG 2 cut(s) 706, 707
BsmAI GTCTC 3 cut(s) 344, 701, 1201
BsmFI GGGAC 2 cut(s) 182, 836
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 2 cut(s) 712, 1003
Bso31I GGTCTC 1 cut(s) 344
Bsp1286I GDGCHC 3 cut(s) 27, 366, 519
Bsp1407I TGTACA 1 cut(s) 1269
Bsp143I GATC 7 cut(s) 33, 103, 331, 378, 430, 532, 724
Bsp19I CCATGG 2 cut(s) 268, 291
BspACI CCGC 1 cut(s) 496
BspANI GGCC 2 cut(s) 712, 1003
BspCNI CTCAG 3 cut(s) 340, 426, 670
BspLI GGNNCC 1 cut(s) 711
BspPI GGATC 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 4 cut(s) 82, 564, 975, 1156
BsrFI RCCGGY 1 cut(s) 1127
BsrGI TGTACA 1 cut(s) 1269
BsrI ACTGG 2 cut(s) 1104, 1232
BssAI RCCGGY 1 cut(s) 1127
BssECI CCNNGG 6 cut(s) 268, 291, 608, 946, 981, 1032
BssMI GATC 7 cut(s) 33, 103, 331, 378, 430, 532, 724
BssNAI GTATAC 1 cut(s) 1249
BssSI CACGAG 1 cut(s) 402
BssT1I CCWWGG 4 cut(s) 268, 291, 608, 981
Bst1107I GTATAC 1 cut(s) 1249
Bst2BI CACGAG 1 cut(s) 402
Bst2UI CCWGG 3 cut(s) 389, 947, 1033
Bst4CI ACNGT 5 cut(s) 540, 626, 990, 1212, 1330
Bst6I CTCTTC 1 cut(s) 48
BstAUI TGTACA 1 cut(s) 1269
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 5 cut(s) 155, 348, 434, 678, 1371
BstDSI CCRYGG 2 cut(s) 268, 291
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 7 cut(s) 36, 106, 334, 381, 433, 535, 727
BstMAI GTCTC 3 cut(s) 344, 701, 1201
BstMBI GATC 7 cut(s) 33, 103, 331, 378, 430, 532, 724
BstNI CCWGG 3 cut(s) 389, 947, 1033
BstSCI CCNGG 4 cut(s) 387, 525, 945, 1031
BstSLI GKGCMC 1 cut(s) 519
BstV1I GCAGC 2 cut(s) 270, 591
BstV2I GAAGAC 2 cut(s) 399, 1125
BstZ17I GTATAC 1 cut(s) 1249
BsuRI GGCC 2 cut(s) 712, 1003
BtgI CCRYGG 2 cut(s) 268, 291
BtsCI GGATG 1 cut(s) 134
BtsI GCAGTG 2 cut(s) 25, 445
BtsIMutI CAGTG 6 cut(s) 25, 445, 536, 995, 1209, 1225
Cac8I GCNNGC 1 cut(s) 288
Cfr10I RCCGGY 1 cut(s) 1127
Cfr13I GGNCC 3 cut(s) 257, 710, 1001
Csp6I GTAC 5 cut(s) 180, 206, 490, 650, 1270
CviAII CATG 3 cut(s) 269, 292, 865
CviQI GTAC 5 cut(s) 180, 206, 490, 650, 1270
DdeI CTNAG 5 cut(s) 155, 348, 434, 678, 1371
DpnI GATC 7 cut(s) 35, 105, 333, 380, 432, 534, 726
DpnII GATC 7 cut(s) 33, 103, 331, 378, 430, 532, 724
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 4 cut(s) 268, 291, 608, 981
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 2 cut(s) 230, 833
EcoO109I RGGNCCY 1 cut(s) 710
EcoRII CCWGG 3 cut(s) 387, 945, 1031
EcoT14I CCWWGG 4 cut(s) 268, 291, 608, 981
ErhI CCWWGG 4 cut(s) 268, 291, 608, 981
FaeI CATG 3 cut(s) 272, 295, 868
FaqI GGGAC 2 cut(s) 182, 836
FatI CATG 3 cut(s) 268, 291, 864
FbaI TGATCA 2 cut(s) 103, 724
FblI GTMKAC 1 cut(s) 1248
Fnu4HI GCNGC 2 cut(s) 284, 605
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 284, 605
FspBI CTAG 5 cut(s) 177, 593, 731, 791, 1059
GluI GCNGC 2 cut(s) 284, 605
HaeIII GGCC 2 cut(s) 712, 1003
HapII CCGG 2 cut(s) 527, 1128
Hin1II CATG 3 cut(s) 272, 295, 868
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 5 cut(s) 195, 775, 824, 918, 995
HpaII CCGG 2 cut(s) 527, 1128
HphI GGTGA 5 cut(s) 113, 162, 257, 555, 962
Hpy166II GTNNAC 2 cut(s) 124, 1249
Hpy188I TCNGA 5 cut(s) 44, 383, 435, 679, 721
Hpy188III TCNNGA 8 cut(s) 221, 347, 404, 485, 620, 700, 731, 772
Hpy8I GTNNAC 2 cut(s) 124, 1249
Hpy99I CGWCG 2 cut(s) 914, 1142
HpyAV CCTTC 2 cut(s) 13, 41
HpyCH4III ACNGT 5 cut(s) 540, 626, 990, 1212, 1330
HpyCH4IV ACGT 2 cut(s) 662, 905
HpyCH4V TGCA 9 cut(s) 186, 286, 319, 666, 839, 932, 1149, 1304, 1336
HpyF3I CTNAG 5 cut(s) 155, 348, 434, 678, 1371
HpySE526I ACGT 2 cut(s) 662, 905
Hsp92II CATG 3 cut(s) 272, 295, 868
Ksp22I TGATCA 2 cut(s) 103, 724
Kzo9I GATC 7 cut(s) 33, 103, 331, 378, 430, 532, 724
LmnI GCTCC 3 cut(s) 22, 330, 361
Lsp1109I GCAGC 2 cut(s) 270, 591
LweI GCATC 1 cut(s) 140
MaeI CTAG 5 cut(s) 177, 593, 731, 791, 1059
MaeII ACGT 2 cut(s) 662, 905
MaeIII GTNAC 4 cut(s) 61, 561, 578, 1043
MalI GATC 7 cut(s) 35, 105, 333, 380, 432, 534, 726
MboI GATC 7 cut(s) 33, 103, 331, 378, 430, 532, 724
MboII GAAGA 5 cut(s) 65, 223, 404, 1126, 1130
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 3 cut(s) 27, 366, 519
MluCI AATT 5 cut(s) 252, 299, 855, 1017, 1320
MlyI GAGTC 3 cut(s) 204, 818, 927
MmeI TCCRAC 1 cut(s) 658
MnlI CCTC 6 cut(s) 184, 796, 983, 1174, 1177, 1207
MseI TTAA 2 cut(s) 303, 1053
MslI CAYNNNNRTG 1 cut(s) 1285
MspA1I CMGCKG 1 cut(s) 604
MspI CCGG 2 cut(s) 527, 1128
MspR9I CCNGG 4 cut(s) 389, 527, 947, 1033
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 413
MvaI CCWGG 3 cut(s) 389, 947, 1033
NciI CCSGG 1 cut(s) 527
NcoI CCATGG 2 cut(s) 268, 291
NdeII GATC 7 cut(s) 33, 103, 331, 378, 430, 532, 724
NlaIII CATG 3 cut(s) 272, 295, 868
NlaIV GGNNCC 1 cut(s) 711
NmuCI GTSAC 4 cut(s) 61, 561, 578, 1043
PctI GAATGC 1 cut(s) 413
PfeI GAWTC 2 cut(s) 775, 995
PflFI GACNNNGTC 1 cut(s) 767
PkrI GCNGC 2 cut(s) 285, 606
PleI GAGTC 3 cut(s) 203, 818, 926
PpsI GAGTC 3 cut(s) 203, 818, 926
PsiI TTATAA 2 cut(s) 1218, 1319
Psp1406I AACGTT 1 cut(s) 905
Psp6I CCWGG 3 cut(s) 387, 945, 1031
PspGI CCWGG 3 cut(s) 387, 945, 1031
PspN4I GGNNCC 1 cut(s) 711
PspPI GGNCC 3 cut(s) 257, 710, 1001
PsyI GACNNNGTC 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 604
RsaI GTAC 5 cut(s) 181, 207, 491, 651, 1271
RsaNI GTAC 5 cut(s) 180, 206, 490, 650, 1270
RseI CAYNNNNRTG 1 cut(s) 1285
SaqAI TTAA 2 cut(s) 303, 1053
SatI GCNGC 2 cut(s) 284, 605
Sau3AI GATC 7 cut(s) 33, 103, 331, 378, 430, 532, 724
Sau96I GGNCC 3 cut(s) 257, 710, 1001
ScaI AGTACT 2 cut(s) 181, 491
SchI GAGTC 3 cut(s) 204, 818, 927
ScrFI CCNGG 4 cut(s) 389, 527, 947, 1033
SduI GDGCHC 3 cut(s) 27, 366, 519
SfaNI GCATC 1 cut(s) 140
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 1285
SmlI CTYRAG 2 cut(s) 485, 1079
SmoI CTYRAG 2 cut(s) 485, 1079
Sse9I AATT 5 cut(s) 252, 299, 855, 1017, 1320
SsiI CCGC 1 cut(s) 496
SspMI CTAG 5 cut(s) 177, 593, 731, 791, 1059
StyD4I CCNGG 4 cut(s) 387, 525, 945, 1031
StyI CCWWGG 4 cut(s) 268, 291, 608, 981
TaaI ACNGT 5 cut(s) 540, 626, 990, 1212, 1330
TaiI ACGT 2 cut(s) 665, 908
TaqI TCGA 4 cut(s) 36, 334, 912, 1137
TasI AATT 5 cut(s) 252, 299, 855, 1017, 1320
TatI WGTACW 4 cut(s) 179, 205, 489, 1269
TfiI GAWTC 2 cut(s) 775, 995
Tru1I TTAA 2 cut(s) 303, 1053
Tru9I TTAA 2 cut(s) 303, 1053
TscAI CASTG 6 cut(s) 32, 445, 543, 995, 1209, 1232
TseFI GTSAC 4 cut(s) 61, 561, 578, 1043
TseI GCWGC 2 cut(s) 283, 604
Tsp45I GTSAC 4 cut(s) 61, 561, 578, 1043
TspGWI ACGGA 1 cut(s) 758
TspRI CASTG 6 cut(s) 32, 445, 543, 995, 1209, 1232
Tth111I GACNNNGTC 1 cut(s) 767
VpaK11BI GGWCC 1 cut(s) 257
XbaI TCTAGA 1 cut(s) 730
XcmI CCANNNNNNNNNTGG 2 cut(s) 95, 1284
XmiI GTMKAC 1 cut(s) 1248
XspI CTAG 5 cut(s) 177, 593, 731, 791, 1059
ZrmI AGTACT 2 cut(s) 181, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.