MD17G1242700.v1.1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000351
Physical Location & Seq
Forward (+)
29185785 .. 29187241
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1242700.v1.1.491

Sequence Viewer

Length: 1428 bp
ATGATGACAGATTTAGCTGAAGAGAGCAATAGTGCAAACAAAGATCACTCCGTAATTCAAGTAAGGGAGGAGGGAGAGAGACGTGAGATAGAAATAAGTGATGTGGGTAACCAAACTTTGAGTGGAAATGAAACAAATAAAGACGAATTATTAGCGTCCCTTATAGAAAAAAAGCTTCCCCAGGAATTTCCAAAACCTGATCCTACTTGCATATTCAGAGTCCCTAATAAACTTGGCAGGGACAATGAAAATGTTTTTGTCCCACAAGTGGTTCCGATCGGGCCCTATCACCACGGAGGAAAAAAGTTCGAAGCCATGGAACAAATTAAGCTATGGAATTTGCAATGCCTCCTCAAACGCCAACCAACTCCAGAAACCTGTTTGGTGAAGTTTGTCGAGGAAATTAGAAGCAAAGAAGAGTTTCTTCGTAACTGCTATGACGAAAAGCTTGGTGATCATCTCAGTAGCGATCAGTTTGTAGAAATGATGGTGGTCGATGGTTGCTTTATTTTAGAACTTATCCGCAAAGATAATCCAATTTCCATATATGATGATGTTTTCAGTATGCCAGAGATGTTGTCGATAGTTAAAAACGACTTGTTCCTGCTAGAAAACCAGCTTCCGTGGAAAGTTCTCGACTGTTTATTCAACCTGACAAAAGAATCAGGAGAGATTTCTCTATATCGACAAACTTTGCCATTAATTGGCGGAGTTATGCCTAATTGGATGATCACAGATTACCAAATTGTCGTGAGTATTGTGGATAAAGAACGGGAGACATGGCAATTCAGACATTTACTTGACAATGCAGGAGATTTTCTTGTTGGATCATTATCGAGGAATAAGGACCGTCCACGTCGTTATGGATTTTGGGATCCTATTCCCTCAGTGACACATCTTGAGGAGATTGGAGTCAAATTTCAACTTGCATCCTTTGAGACAGAGCTGTTGGGCATAACCTTCAACAGGGAAAAAGGAGTGATGGAAATTCCAAGGATGATAATTGGAGCCAACACAGAATGTGTCTTGAGAAACCTCATAGCCTACGAACGGTGTTCAATGAAGCCCCATTACATTTTGTCTTATGCCATGCTGCTGAATCAGCTTATCAAGTCTACCAAAGATTTAGACTCTCTCGTTCAGAAAGGAATTGTACTAACCAATTTGAGCAAGGAGGACACGGTTTCTTTGTTCAATAGGCTTTGCAATGACACTGCATCCATCCTGTTCGTTTACTCTCAACTCGCCCTCGACGTGTATTTCTATAATCGAGATCGTTGGCTAAGGCGTTGGCTTGCTGGGATAAAAAGGAATTATCTATACAATCCATCGTCAATCTGGTTAGTCTCAAATGCGGTCATCATTATTCTCATTCTTACCGTCATGCAAACCCTATATAGTGTTCTCGCCTACTACAAGCAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

476

Amino Acids

55.08

Weight (kDa)

5.52

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 71 - 457 2.3e-92 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 704
AccI GTMKAC 1 cut(s) 1115
AciI CCGC 3 cut(s) 523, 708, 1355
AclWI GGATC 4 cut(s) 194, 835, 869, 882
AcsI RAATTY 4 cut(s) 185, 337, 917, 987
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 1155
AfiI CCNNNNNNNGG 4 cut(s) 268, 704, 966, 1050
AflIII ACRYGT 1 cut(s) 1254
AgsI TTSAA 6 cut(s) 59, 649, 923, 964, 1059, 1195
AjiI CACGTC 3 cut(s) 83, 857, 1255
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 7 cut(s) 17, 175, 331, 448, 619, 946, 1105
AluI AGCT 7 cut(s) 17, 175, 331, 448, 619, 946, 1105
Alw26I GTCTC 4 cut(s) 73, 770, 932, 1351
AlwI GGATC 4 cut(s) 194, 835, 869, 882
AoxI GGCC 1 cut(s) 281
ApaI GGGCCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 1093
ApoI RAATTY 4 cut(s) 185, 337, 917, 987
AseI ATTAAT 1 cut(s) 701
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 3 cut(s) 281, 282, 847
AsuHPI GGTGA 3 cut(s) 281, 397, 464
AsuII TTCGAA 1 cut(s) 309
AvaII GGWCC 1 cut(s) 847
BaeGI GKGCMC 1 cut(s) 285
BamHI GGATCC 1 cut(s) 874
BanII GRGCYC 1 cut(s) 285
BarI GAAGNNNNNNTAC 2 cut(s) 1055, 1087
BbvI GCAGC 1 cut(s) 1080
BccI CCATC 5 cut(s) 481, 491, 976, 1229, 1336
BciT130I CCWGG 1 cut(s) 182
BclI TGATCA 2 cut(s) 454, 729
BcoDI GTCTC 4 cut(s) 73, 770, 932, 1351
BfaI CTAG 1 cut(s) 608
BisI GCNGC 1 cut(s) 1094
BlsI GCNGC 1 cut(s) 1095
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 847
BmgBI CACGTC 3 cut(s) 83, 857, 1255
BmgT120I GGNCC 3 cut(s) 281, 282, 847
BmiI GGNNCC 4 cut(s) 273, 283, 876, 1009
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 2 cut(s) 938, 1226
BpmI CTGGAG 1 cut(s) 354
Bpu10I CCTNAGC 1 cut(s) 1283
Bpu14I TTCGAA 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 920, 1048
BsaBI GATNNNNATC 1 cut(s) 832
BsaJI CCNNGG 5 cut(s) 180, 292, 315, 623, 992
Bsc4I CCNNNNNNNGG 4 cut(s) 268, 704, 966, 1050
Bse3DI GCAATG 2 cut(s) 350, 1213
Bse8I GATNNNNATC 1 cut(s) 832
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 5 cut(s) 180, 292, 315, 623, 992
BseGI GGATG 5 cut(s) 732, 929, 1002, 1217, 1221
BseJI GATNNNNATC 1 cut(s) 832
BseLI CCNNNNNNNGG 4 cut(s) 268, 704, 966, 1050
BseMI GCAATG 2 cut(s) 350, 1213
BseMII CTCAG 2 cut(s) 475, 900
BseRI GAGGAG 3 cut(s) 83, 341, 917
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 1 cut(s) 1080
BseYI CCCAGC 1 cut(s) 1298
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 1 cut(s) 283
BsiEI CGRYCG 1 cut(s) 279
BslFI GGGAC 4 cut(s) 142, 206, 245, 254
BslI CCNNNNNNNGG 4 cut(s) 268, 704, 966, 1050
BsmAI GTCTC 4 cut(s) 73, 770, 932, 1351
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 4 cut(s) 142, 206, 245, 254
BsnI GGCC 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 309
Bsp120I GGGCCC 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 9 cut(s) 43, 199, 276, 454, 469, 729, 827, 874, 1273
Bsp19I CCATGG 1 cut(s) 315
BspACI CCGC 3 cut(s) 523, 708, 1355
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 2 cut(s) 474, 899
BspLI GGNNCC 4 cut(s) 273, 283, 876, 1009
BspPI GGATC 4 cut(s) 194, 835, 869, 882
BspT104I TTCGAA 1 cut(s) 309
BsrDI GCAATG 2 cut(s) 350, 1213
BssECI CCNNGG 5 cut(s) 180, 292, 315, 623, 992
BssMI GATC 9 cut(s) 43, 199, 276, 454, 469, 729, 827, 874, 1273
BssT1I CCWWGG 2 cut(s) 315, 992
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 5 cut(s) 641, 851, 1053, 1183, 1381
Bst6I CTCTTC 2 cut(s) 15, 411
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 1296
BstDEI CTNAG 3 cut(s) 461, 886, 1283
BstDSI CCRYGG 3 cut(s) 292, 315, 623
BstEII GGTNACC 1 cut(s) 107
BstENI CCTNNNNNAGG 1 cut(s) 964
BstF5I GGATG 5 cut(s) 732, 929, 1002, 1217, 1221
BstKTI GATC 9 cut(s) 46, 202, 279, 457, 472, 732, 830, 877, 1276
BstMAI GTCTC 4 cut(s) 73, 770, 932, 1351
BstMBI GATC 9 cut(s) 43, 199, 276, 454, 469, 729, 827, 874, 1273
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 1 cut(s) 1102
BstNI CCWGG 1 cut(s) 182
BstPI GGTNACC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 1080
BstX2I RGATCY 1 cut(s) 874
BstYI RGATCY 1 cut(s) 874
BsuRI GGCC 1 cut(s) 283
BtgI CCRYGG 3 cut(s) 292, 315, 623
BtrI CACGTC 3 cut(s) 83, 857, 1255
BtsCI GGATG 5 cut(s) 732, 929, 1002, 1217, 1221
BtsI GCAGTG 1 cut(s) 1212
BtsIMutI CAGTG 2 cut(s) 894, 1212
Cac8I GCNNGC 1 cut(s) 1296
Cfr13I GGNCC 3 cut(s) 281, 282, 847
CseI GACGC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 1154
CviAII CATG 4 cut(s) 316, 780, 1090, 1384
CviQI GTAC 1 cut(s) 1154
DdeI CTNAG 3 cut(s) 461, 886, 1283
DpnI GATC 9 cut(s) 45, 201, 278, 456, 471, 731, 829, 876, 1275
DpnII GATC 9 cut(s) 43, 199, 276, 454, 469, 729, 827, 874, 1273
Eam1104I CTCTTC 2 cut(s) 15, 411
EarI CTCTTC 2 cut(s) 15, 411
EciI GGCGGA 1 cut(s) 723
Eco130I CCWWGG 2 cut(s) 315, 992
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 847
Eco57I CTGAAG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 107
EcoNI CCTNNNNNAGG 1 cut(s) 964
EcoO109I RGGNCCY 1 cut(s) 282
EcoO65I GGTNACC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 2 cut(s) 315, 992
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 2 cut(s) 315, 992
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 4 cut(s) 319, 783, 1093, 1387
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FaqI GGGAC 4 cut(s) 142, 206, 245, 254
FatI CATG 4 cut(s) 315, 779, 1089, 1383
FbaI TGATCA 2 cut(s) 454, 729
FblI GTMKAC 1 cut(s) 1115
Fnu4HI GCNGC 1 cut(s) 1094
FokI GGATG 5 cut(s) 739, 916, 1009, 1204, 1208
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 1094
FspBI CTAG 1 cut(s) 608
GluI GCNGC 1 cut(s) 1094
GsaI CCCAGC 1 cut(s) 1302
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 1 cut(s) 283
HgaI GACGC 1 cut(s) 144
Hin1II CATG 4 cut(s) 319, 783, 1093, 1387
HindIII AAGCTT 2 cut(s) 173, 446
HinfI GANTC 5 cut(s) 219, 662, 912, 1099, 1130
HphI GGTGA 3 cut(s) 281, 397, 464
Hpy166II GTNNAC 3 cut(s) 854, 1116, 1234
Hpy188I TCNGA 4 cut(s) 218, 276, 791, 1143
Hpy188III TCNNGA 7 cut(s) 371, 635, 666, 751, 899, 1027, 1271
Hpy8I GTNNAC 3 cut(s) 854, 1116, 1234
Hpy99I CGWCG 2 cut(s) 861, 1256
HpyAV CCTTC 1 cut(s) 970
HpyCH4III ACNGT 5 cut(s) 641, 851, 1053, 1183, 1381
HpyCH4IV ACGT 3 cut(s) 82, 856, 1254
HpyCH4V TGCA 8 cut(s) 35, 210, 343, 809, 929, 1206, 1217, 1387
HpyF10VI GCNNNNNNNGC 1 cut(s) 1102
HpyF3I CTNAG 3 cut(s) 461, 886, 1283
HpySE526I ACGT 3 cut(s) 82, 856, 1254
Hsp92II CATG 4 cut(s) 319, 783, 1093, 1387
Ksp22I TGATCA 2 cut(s) 454, 729
Kzo9I GATC 9 cut(s) 43, 199, 276, 454, 469, 729, 827, 874, 1273
LmnI GCTCC 1 cut(s) 1007
Lsp1109I GCAGC 1 cut(s) 1080
LweI GCATC 2 cut(s) 938, 1226
MaeI CTAG 1 cut(s) 608
MaeII ACGT 3 cut(s) 82, 856, 1254
MaeIII GTNAC 3 cut(s) 107, 428, 889
MalI GATC 9 cut(s) 45, 201, 278, 456, 471, 731, 829, 876, 1275
MboI GATC 9 cut(s) 43, 199, 276, 454, 469, 729, 827, 874, 1273
MboII GAAGA 3 cut(s) 32, 416, 428
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 1 cut(s) 285
MlyI GAGTC 3 cut(s) 228, 921, 1124
MmeI TCCRAC 1 cut(s) 805
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 3 cut(s) 327, 588, 701
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 1102
NcoI CCATGG 1 cut(s) 315
NdeII GATC 9 cut(s) 43, 199, 276, 454, 469, 729, 827, 874, 1273
NlaIII CATG 4 cut(s) 319, 783, 1093, 1387
NlaIV GGNNCC 4 cut(s) 273, 283, 876, 1009
NmuCI GTSAC 1 cut(s) 889
NspV TTCGAA 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 1251
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 662, 1099
PflMI CCANNNNNTGG 1 cut(s) 704
PkrI GCNGC 1 cut(s) 1095
Ple19I CGATCG 1 cut(s) 279
PleI GAGTC 3 cut(s) 227, 920, 1124
PpsI GAGTC 3 cut(s) 227, 920, 1124
PshBI ATTAAT 1 cut(s) 701
Psp6I CCWGG 1 cut(s) 180
PspEI GGTNACC 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 1298
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 4 cut(s) 273, 283, 876, 1009
PspOMI GGGCCC 1 cut(s) 281
PspPI GGNCC 3 cut(s) 281, 282, 847
PsuI RGATCY 1 cut(s) 874
PvuI CGATCG 1 cut(s) 279
RsaI GTAC 1 cut(s) 1155
RsaNI GTAC 1 cut(s) 1154
SaqAI TTAA 3 cut(s) 327, 588, 701
SatI GCNGC 1 cut(s) 1094
Sau3AI GATC 9 cut(s) 43, 199, 276, 454, 469, 729, 827, 874, 1273
Sau96I GGNCC 3 cut(s) 281, 282, 847
SchI GAGTC 3 cut(s) 228, 921, 1124
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 2 cut(s) 938, 1226
SfuI TTCGAA 1 cut(s) 309
SinI GGWCC 1 cut(s) 847
SmlI CTYRAG 2 cut(s) 899, 1027
SmoI CTYRAG 2 cut(s) 899, 1027
SsiI CCGC 3 cut(s) 523, 708, 1355
SspMI CTAG 1 cut(s) 608
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 2 cut(s) 315, 992
TaaI ACNGT 5 cut(s) 641, 851, 1053, 1183, 1381
TaiI ACGT 3 cut(s) 85, 859, 1257
TaqI TCGA 9 cut(s) 309, 396, 495, 581, 636, 685, 836, 1251, 1270
TatI WGTACW 1 cut(s) 1153
TfiI GAWTC 2 cut(s) 662, 1099
Tru1I TTAA 3 cut(s) 327, 588, 701
Tru9I TTAA 3 cut(s) 327, 588, 701
TscAI CASTG 2 cut(s) 894, 1219
TseFI GTSAC 1 cut(s) 889
TseI GCWGC 1 cut(s) 1093
Tsp45I GTSAC 1 cut(s) 889
TspDTI ATGAA 3 cut(s) 144, 261, 1076
TspGWI ACGGA 3 cut(s) 40, 309, 612
TspRI CASTG 2 cut(s) 894, 1219
Van91I CCANNNNNTGG 1 cut(s) 704
VpaK11BI GGWCC 1 cut(s) 847
VspI ATTAAT 1 cut(s) 701
XagI CCTNNNNNAGG 1 cut(s) 964
XapI RAATTY 4 cut(s) 185, 337, 917, 987
XcmI CCANNNNNNNNNTGG 2 cut(s) 119, 1335
XmiI GTMKAC 1 cut(s) 1115
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.