RchiOBHm_Chr2g0163511

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000351
Physical Location & Seq
Forward (+)
78983410 .. 78983844
435 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53168

Sequence Viewer

Length: 435 bp
ATGGAAGGAATTAAACTATGGTACTTGCGTTCCCTCCTTCATCGAACACCAACTCCTGAAACCAGTTTGGAGCATTTGGTCAAAAATATTAGAGCCGTAGAACAACTTTGTAGCGATTGCTATGACGATGAAAGTAATCTGAGTAGTGATCAGTTTGTAGAAGTGATGGTGGTTGATGGTTGCTTCATCGTTGAATTCATGCTCAAGACAGAACGTAGAGAGTGTGTGACTGATTCTGTAACTGAAAATCTATGGATACGTTCACCTCTCATATCTGACTTGTTTCTACTCAAAAACCAGCTGCCTTGGCGGCTAGTACTTGAATGTTTATTCCAACTGATAAAGGAAAATACTTGTAATGAATCTGTTGGAAAGTACACTTCTCTATCTGAGCTCACTCACAAAATCATGGAGTTTGCACTATTGGCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

144

Amino Acids

16.76

Weight (kDa)

4.86

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 132 4.7e-28 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 310
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 3 cut(s) 23, 318, 377
AgsI TTSAA 2 cut(s) 194, 323
AloI GAACNNNNNNTCC 2 cut(s) 37, 69
AluBI AGCT 2 cut(s) 301, 394
AluI AGCT 2 cut(s) 301, 394
Alw21I GWGCWC 1 cut(s) 396
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 255
BaeI ACNNNNGTAYC 2 cut(s) 13, 46
BalI TGGCCA 1 cut(s) 428
BanII GRGCYC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 288
BccI CCATC 2 cut(s) 160, 170
BceAI ACGGC 1 cut(s) 80
BciVI GTATCC 1 cut(s) 249
BclI TGATCA 1 cut(s) 148
BfaI CTAG 2 cut(s) 314, 433
BfuI GTATCC 1 cut(s) 249
BglI GCCNNNNNGGC 1 cut(s) 310
BisI GCNGC 2 cut(s) 302, 311
BlsI GCNGC 2 cut(s) 303, 312
BmcAI AGTACT 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bse1I ACTGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 305
BseMII CTCAG 2 cut(s) 131, 381
BseNI ACTGG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 288
BshFI GGCC 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 396
BsnI GGCC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 1 cut(s) 310
BspANI GGCC 1 cut(s) 428
BspCNI CTCAG 2 cut(s) 132, 382
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 140, 390
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 3 cut(s) 307, 310, 425
BstV1I GCAGC 1 cut(s) 288
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 428
Csp6I GTAC 3 cut(s) 22, 317, 376
CviAII CATG 2 cut(s) 199, 409
CviJI RGCY 5 cut(s) 95, 301, 313, 394, 428
CviKI_1 RGCY 5 cut(s) 95, 301, 313, 394, 428
CviQI GTAC 3 cut(s) 22, 317, 376
DdeI CTNAG 2 cut(s) 140, 390
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 426
Ecl136II GAGCTC 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 396
Eco53kI GAGCTC 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 2 cut(s) 202, 412
FaiI YATR 6 cut(s) 19, 123, 200, 253, 272, 410
FatI CATG 2 cut(s) 198, 408
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 302, 311
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 2 cut(s) 302, 311
FspBI CTAG 2 cut(s) 314, 433
GluI GCNGC 2 cut(s) 302, 311
HaeIII GGCC 1 cut(s) 428
Hin1II CATG 2 cut(s) 202, 412
HinfI GANTC 2 cut(s) 233, 362
HphI GGTGA 1 cut(s) 255
Hpy166II GTNNAC 2 cut(s) 263, 378
Hpy188I TCNGA 3 cut(s) 141, 277, 391
Hpy188III TCNNGA 2 cut(s) 56, 205
Hpy8I GTNNAC 2 cut(s) 263, 378
HpyAV CCTTC 1 cut(s) 47
HpyCH4IV ACGT 2 cut(s) 214, 259
HpyCH4V TGCA 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 310, 425
HpyF3I CTNAG 2 cut(s) 140, 390
HpySE526I ACGT 2 cut(s) 214, 259
Hsp92II CATG 2 cut(s) 202, 412
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 69, 76, 311
Lsp1109I GCAGC 1 cut(s) 288
MaeI CTAG 2 cut(s) 314, 433
MaeII ACGT 2 cut(s) 214, 259
MaeIII GTNAC 2 cut(s) 226, 238
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 396
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 2 cut(s) 9, 194
MluNI TGGCCA 1 cut(s) 428
MmeI TCCRAC 2 cut(s) 349, 358
MnlI CCTC 2 cut(s) 44, 276
Mox20I TGGCCA 1 cut(s) 428
MscI TGGCCA 1 cut(s) 428
MseI TTAA 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 428
MspA1I CMGCKG 1 cut(s) 301
MwoI GCNNNNNNNGC 3 cut(s) 307, 310, 425
NdeII GATC 1 cut(s) 148
NlaIII CATG 2 cut(s) 202, 412
NmuCI GTSAC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 233, 362
PkrI GCNGC 2 cut(s) 303, 312
Psp124BI GAGCTC 1 cut(s) 396
PvuII CAGCTG 1 cut(s) 301
RsaI GTAC 3 cut(s) 23, 318, 377
RsaNI GTAC 3 cut(s) 22, 317, 376
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 302, 311
Sau3AI GATC 1 cut(s) 148
ScaI AGTACT 1 cut(s) 318
SduI GDGCHC 1 cut(s) 396
SetI ASST 5 cut(s) 217, 262, 268, 303, 396
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 2 cut(s) 9, 194
SsiI CCGC 1 cut(s) 310
SspI AATATT 1 cut(s) 88
SspMI CTAG 2 cut(s) 314, 433
SstI GAGCTC 1 cut(s) 396
StyI CCWWGG 1 cut(s) 305
TaiI ACGT 2 cut(s) 217, 262
TaqI TCGA 1 cut(s) 43
TasI AATT 2 cut(s) 9, 194
TatI WGTACW 2 cut(s) 316, 375
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 2 cut(s) 233, 362
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 5 cut(s) 29, 144, 175, 187, 375
XapI RAATTY 1 cut(s) 194
XspI CTAG 2 cut(s) 314, 433
ZrmI AGTACT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.