Prupe.3G130100_v2.0.a1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000351
Physical Location & Seq
Forward (+)
13242948 .. 13243784
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G130100.1

Sequence Viewer

Length: 837 bp
ATGACAACAGATATCAATACAAGTGACCACTCCGTGATTGAATCTGAGAATGATCAGGAGGAAGAATCTGTGCCGATGGAAAATGATGATAATAATGAAAATAGAGATGAAGATGAATTGTTGTCATCCTCGATTCAAGAAAAGGTTAACCATGCCTCGGATCCATTTTCAGTTCATCGTTGCATATATAGGATCCCTGGTGTACTAAGCAAGCATAAGGAAAAAGCTTTCGTTCCAATCGTAGTTTCAATTGGGCCAAGTCACCATGGAAACGAAAACCTTCAAGCCATGGAAGAAGTTAAGCTATGGTACTTGCATTGCCTCCTTGACCGAAAACCAACTCCCGAAACGGATATGGAGTCTCTTGTCAAAGCCATTAGACCTATACAACAAGCATGTCAAGAGTGTTATGAAGAAAAAATTCATATCAGCAATGACGAATTTCTTGAAATGATGGTGATTGATGGTTGCTTTATTAGCGAATTCTTTCTCAGGTTTGCCAACGAGGTGAACGTCGACAACGAAGATGGTCTCTTTTCTACATCATGGATGCTTTTAGCAGTCATAAATGATCTGCTTCTACTTGAAAACCAACTTCCTTGGAGAGTTCTTGATTGTTTATTTGAGCTCACATGTGAATCGGGAACGTCTTCCCTACTAGGGCTTATTAACAGTACTTTCAAGGCCTACACTGGGGGGCTATCTGCAAAGCCTAGTGGAACAGCGAAACACAGGCATTTACTTGACTTCATACGAAACTCTTTCCTTGGATCATACCCAGAAAGCCAGTCGGATGAAAGCACGAGAGATTCAGAAGCAATTCAAATGTTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

279

Amino Acids

31.5

Weight (kDa)

4.53

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 516
AclWI GGATC 5 cut(s) 155, 168, 187, 200, 778
AcsI RAATTY 3 cut(s) 420, 440, 482
AdeI CACNNNGTG 1 cut(s) 34
AfaI GTAC 3 cut(s) 204, 311, 676
AfiI CCNNNNNNNGG 3 cut(s) 157, 660, 693
AflIII ACRYGT 1 cut(s) 632
AgsI TTSAA 8 cut(s) 41, 137, 249, 284, 449, 587, 682, 824
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 229, 261
AluBI AGCT 3 cut(s) 227, 304, 628
AluI AGCT 3 cut(s) 227, 304, 628
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 2 cut(s) 366, 536
AlwI GGATC 5 cut(s) 155, 168, 187, 200, 778
AoxI GGCC 2 cut(s) 254, 684
ApoI RAATTY 3 cut(s) 420, 440, 482
Asp700I GAANNNNTTC 5 cut(s) 279, 420, 486, 649, 819
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 3 cut(s) 254, 469, 520
BamHI GGATCC 2 cut(s) 160, 192
BanII GRGCYC 1 cut(s) 630
BauI CACGAG 1 cut(s) 802
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 630
BccI CCATC 4 cut(s) 70, 448, 458, 521
BciT130I CCWGG 1 cut(s) 198
BclI TGATCA 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 366, 536
BfaI CTAG 2 cut(s) 659, 714
BmcAI AGTACT 1 cut(s) 676
Bme1390I CCNGG 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 162, 194
BmrFI CCNGG 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 702
BmsI GCATC 1 cut(s) 540
BmuI ACTGGG 1 cut(s) 702
BpiI GAAGAC 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 6 cut(s) 156, 196, 265, 288, 599, 766
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 660, 693
Bse1I ACTGG 2 cut(s) 697, 787
Bse3DI GCAATG 2 cut(s) 316, 439
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 6 cut(s) 156, 196, 265, 288, 599, 766
BseGI GGATG 3 cut(s) 125, 555, 799
BseLI CCNNNNNNNGG 3 cut(s) 157, 660, 693
BseMI GCAATG 2 cut(s) 316, 439
BseMII CTCAG 2 cut(s) 36, 505
BseNI ACTGG 2 cut(s) 697, 787
BshFI GGCC 2 cut(s) 256, 686
BsiHKAI GWGCWC 1 cut(s) 630
BslI CCNNNNNNNGG 3 cut(s) 157, 660, 693
BsmAI GTCTC 2 cut(s) 366, 536
BsnI GGCC 2 cut(s) 256, 686
Bso31I GGTCTC 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 630
Bsp143I GATC 5 cut(s) 52, 160, 192, 571, 770
Bsp19I CCATGG 2 cut(s) 265, 288
BspANI GGCC 2 cut(s) 256, 686
BspCNI CTCAG 2 cut(s) 37, 504
BspLI GGNNCC 2 cut(s) 162, 194
BspPI GGATC 5 cut(s) 155, 168, 187, 200, 778
BspTNI GGTCTC 1 cut(s) 536
BsrDI GCAATG 2 cut(s) 316, 439
BsrI ACTGG 2 cut(s) 697, 787
BssECI CCNNGG 6 cut(s) 156, 196, 265, 288, 599, 766
BssMI GATC 5 cut(s) 52, 160, 192, 571, 770
BssSI CACGAG 1 cut(s) 802
BssT1I CCWWGG 4 cut(s) 265, 288, 599, 766
Bst2BI CACGAG 1 cut(s) 802
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 3 cut(s) 45, 206, 491
BstDSI CCRYGG 2 cut(s) 265, 288
BstF5I GGATG 3 cut(s) 125, 555, 799
BstKTI GATC 5 cut(s) 55, 163, 195, 574, 773
BstMAI GTCTC 2 cut(s) 366, 536
BstMBI GATC 5 cut(s) 52, 160, 192, 571, 770
BstMWI GCNNNNNNNGC 1 cut(s) 477
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 2 cut(s) 399, 636
BstSCI CCNGG 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 2 cut(s) 160, 192
BstYI RGATCY 2 cut(s) 160, 192
BsuRI GGCC 2 cut(s) 256, 686
BtgI CCRYGG 2 cut(s) 265, 288
BtsCI GGATG 3 cut(s) 125, 555, 799
BtsIMutI CAGTG 1 cut(s) 690
Cac8I GCNNGC 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 3 cut(s) 203, 310, 675
CviAII CATG 6 cut(s) 152, 266, 289, 396, 546, 633
CviQI GTAC 3 cut(s) 203, 310, 675
DdeI CTNAG 3 cut(s) 45, 206, 491
DpnI GATC 5 cut(s) 54, 162, 194, 573, 772
DpnII GATC 5 cut(s) 52, 160, 192, 571, 770
DraIII CACNNNGTG 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 628
Eco130I CCWWGG 4 cut(s) 265, 288, 599, 766
Eco147I AGGCCT 1 cut(s) 686
Eco24I GRGCYC 1 cut(s) 630
Eco31I GGTCTC 1 cut(s) 536
Eco32I GATATC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 628
EcoICRI GAGCTC 1 cut(s) 628
EcoRI GAATTC 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 196
EcoRV GATATC 1 cut(s) 13
EcoT14I CCWWGG 4 cut(s) 265, 288, 599, 766
EcoT38I GRGCYC 1 cut(s) 630
ErhI CCWWGG 4 cut(s) 265, 288, 599, 766
FaeI CATG 6 cut(s) 155, 269, 292, 399, 549, 636
FatI CATG 6 cut(s) 151, 265, 288, 395, 545, 632
FbaI TGATCA 1 cut(s) 52
FblI GTMKAC 1 cut(s) 516
FokI GGATG 3 cut(s) 112, 562, 806
FriOI GRGCYC 1 cut(s) 630
FspBI CTAG 2 cut(s) 659, 714
HaeIII GGCC 2 cut(s) 256, 686
Hin1II CATG 6 cut(s) 155, 269, 292, 399, 549, 636
HincII GTYRAC 2 cut(s) 148, 517
HindII GTYRAC 2 cut(s) 148, 517
HindIII AAGCTT 1 cut(s) 225
HinfI GANTC 6 cut(s) 41, 65, 133, 359, 638, 809
HpaI GTTAAC 1 cut(s) 148
HphI GGTGA 3 cut(s) 254, 469, 520
Hpy166II GTNNAC 4 cut(s) 148, 203, 511, 517
Hpy188I TCNGA 4 cut(s) 46, 160, 793, 814
Hpy188III TCNNGA 7 cut(s) 56, 137, 344, 401, 446, 611, 642
Hpy8I GTNNAC 4 cut(s) 148, 203, 511, 517
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4IV ACGT 2 cut(s) 513, 647
HpyCH4V TGCA 3 cut(s) 183, 316, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 477
HpyF3I CTNAG 3 cut(s) 45, 206, 491
HpySE526I ACGT 2 cut(s) 513, 647
Hsp92II CATG 6 cut(s) 155, 269, 292, 399, 549, 636
Ksp22I TGATCA 1 cut(s) 52
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 5 cut(s) 52, 160, 192, 571, 770
LpnPI CCDG 8 cut(s) 41, 183, 210, 478, 678, 718, 792, 800
LweI GCATC 1 cut(s) 540
MaeI CTAG 2 cut(s) 659, 714
MaeII ACGT 2 cut(s) 513, 647
MaeIII GTNAC 2 cut(s) 23, 260
MalI GATC 5 cut(s) 54, 162, 194, 573, 772
MboI GATC 5 cut(s) 52, 160, 192, 571, 770
MboII GAAGA 6 cut(s) 74, 122, 305, 425, 536, 642
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 2 cut(s) 160, 192
MhlI GDGCHC 1 cut(s) 630
MluCI AATT 6 cut(s) 116, 249, 420, 440, 482, 819
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 5 cut(s) 52, 139, 166, 332, 499
MroXI GAANNNNTTC 5 cut(s) 279, 420, 486, 649, 819
MseI TTAA 3 cut(s) 147, 300, 669
MspR9I CCNGG 1 cut(s) 198
MunI CAATTG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 477
NcoI CCATGG 2 cut(s) 265, 288
NdeII GATC 5 cut(s) 52, 160, 192, 571, 770
NlaIII CATG 6 cut(s) 155, 269, 292, 399, 549, 636
NlaIV GGNNCC 2 cut(s) 162, 194
NmuCI GTSAC 2 cut(s) 23, 260
NspI RCATGY 2 cut(s) 399, 636
PceI AGGCCT 1 cut(s) 686
PciI ACATGT 1 cut(s) 632
PcsI WCGNNNNNNNCGW 3 cut(s) 237, 510, 519
PdmI GAANNNNTTC 5 cut(s) 279, 420, 486, 649, 819
PfeI GAWTC 5 cut(s) 41, 65, 133, 638, 809
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PscI ACATGT 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 162, 194
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 2 cut(s) 160, 192
RsaI GTAC 3 cut(s) 204, 311, 676
RsaNI GTAC 3 cut(s) 203, 310, 675
SacI GAGCTC 1 cut(s) 630
SalI GTCGAC 1 cut(s) 515
SaqAI TTAA 3 cut(s) 147, 300, 669
Sau3AI GATC 5 cut(s) 52, 160, 192, 571, 770
Sau96I GGNCC 1 cut(s) 254
ScaI AGTACT 1 cut(s) 676
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 630
SfaNI GCATC 1 cut(s) 540
Sse9I AATT 6 cut(s) 116, 249, 420, 440, 482, 819
SseBI AGGCCT 1 cut(s) 686
SspMI CTAG 2 cut(s) 659, 714
SstI GAGCTC 1 cut(s) 630
StuI AGGCCT 1 cut(s) 686
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 4 cut(s) 265, 288, 599, 766
TaaI ACNGT 1 cut(s) 674
TaiI ACGT 2 cut(s) 516, 650
TaqI TCGA 2 cut(s) 131, 516
TaqII GACCGA 1 cut(s) 345
TasI AATT 6 cut(s) 116, 249, 420, 440, 482, 819
TatI WGTACW 2 cut(s) 202, 674
TfiI GAWTC 5 cut(s) 41, 65, 133, 638, 809
Tru1I TTAA 3 cut(s) 147, 300, 669
Tru9I TTAA 3 cut(s) 147, 300, 669
TscAI CASTG 1 cut(s) 697
TseFI GTSAC 2 cut(s) 23, 260
Tsp45I GTSAC 2 cut(s) 23, 260
TspDTI ATGAA 8 cut(s) 111, 123, 129, 164, 413, 426, 739, 810
TspGWI ACGGA 2 cut(s) 22, 365
TspRI CASTG 1 cut(s) 697
XapI RAATTY 3 cut(s) 420, 440, 482
XceI RCATGY 2 cut(s) 399, 636
XmiI GTMKAC 1 cut(s) 516
XmnI GAANNNNTTC 5 cut(s) 279, 420, 486, 649, 819
XspI CTAG 2 cut(s) 659, 714
ZrmI AGTACT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.