Prupe.3G136500_v2.0.a1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000351
Physical Location & Seq
Reverse (-)
14396256 .. 14397535
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G136500.1

Sequence Viewer

Length: 1245 bp
ATGGCTGCAAATAATGTGAGACATGAAAATGAAATATTAGCATCCTCAATTCAAGCGAAACTTCACCAGCAGTCTCCATCACGAGCTCATCATTGCATATTTAGAATCCCTCATGTGCTGCTTAAGGGTAAAGAAGAAGTGTATGTTCCACATTTACTTTCAATTGGACCATTTCAGCGTGGATTGCAGTTCCAAGCCATGGAAGTGATTAAATCTTGGTATTTGCATTGCCTTCTTGAGCGAAAACCAACTCCAACTACTGTCTTAGAGGATTTTGTCGGAGCCATTAGAGATATGGAACAATATTGTCGCGATTGCTATGAAGAAAATATTGATTTAACCAGTGATGAGTTTGTAGAAATGATGGTGGTCGATGGTTGCTTTATCATTGAGCTCTTCCGCAAGTTTCAGGAAAGGGCATGGATGCAACCGATCCTCATAAATGACTTGCTTCTACTTGAAAACCAGCTTCCTTGGAAAGTTATTGACCGTTTGTTTGACCTCACACGGGAAAGTAATGCCCGTACGAAGTATTCACTTTCCGAGCTTACTCTAGAATACTTTGACGGGTACACCTTGAGGATGTGGGACTGGCAACGCGTCCGTGAAGCATTGGAAGGCAAGCATTTGCTTGACTTGGTAAAAAACTCTTTGCTCTCATCACGTGCACAACCATCACGTGCACAACACTTAGATCGGACTTCTTCTTTGCGTATGCCCTCTGTGACAGAACTTGAAAAGTTAGGAATTATATTTGAATGTGGAATTGGAGAGGACATGTTCGATATAACCTTCAAAAATGGAGTGATGAGAATTCCACGGATAAGAGTTCATAAGAATGGAGAATCTCTGTTTAGAAATCTCGTGGCGTATGAACAGTGTGAAACAGCCAGTAAAATTACCTCTTATGCTGCGTTGTTGGAGCAACTTATTACGTCTGACAAAGATGTAGAGTGTCTCGCTAAGTGTCGAATTATAGAAAACCATTTGGGCTACGACATATCCTTGATTTTTAGAAGTCTTTCCAATGATGTTAGGCCGCGCAATTGTTGTTACTGGAGACTCTATCGGGATGTGAACGCGTATTGTGATACTATATGGCATCGGTATCAAAGCCAGTTACGTACATATTTTAAAAATCCATTGGAATTGGCGAATTTTGCGACTGCTGTCGTCTTTGTTACAACATTGACCTTGATACAAACAGTTCTCTCCATTCTGTCTTACAAGAAGCCGCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

415

Amino Acids

48.48

Weight (kDa)

6.65

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AccII CGCG 4 cut(s) 312, 600, 1042, 1082
AciI CCGC 3 cut(s) 400, 1040, 1235
AclWI GGATC 1 cut(s) 427
AcsI RAATTY 2 cut(s) 813, 1156
AcvI CACGTG 2 cut(s) 665, 680
AfaI GTAC 3 cut(s) 526, 572, 1126
AfiI CCNNNNNNNGG 2 cut(s) 199, 508
AflII CTTAAG 1 cut(s) 122
AflIII ACRYGT 3 cut(s) 598, 777, 1080
AgsI TTSAA 6 cut(s) 53, 162, 461, 737, 758, 796
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
AluBI AGCT 4 cut(s) 86, 394, 469, 547
AluI AGCT 4 cut(s) 86, 394, 469, 547
Alw21I GWGCWC 4 cut(s) 88, 396, 670, 685
Alw26I GTCTC 4 cut(s) 13, 78, 962, 1054
Alw44I GTGCAC 2 cut(s) 666, 681
AlwI GGATC 1 cut(s) 427
AoxI GGCC 1 cut(s) 1037
ApaLI GTGCAC 2 cut(s) 666, 681
ApeKI GCWGC 4 cut(s) 5, 118, 911, 1237
ApoI RAATTY 2 cut(s) 813, 1156
ArsI GACNNNNNNTTYG 4 cut(s) 479, 511, 691, 723
Asp700I GAANNNNTTC 1 cut(s) 1021
AspLEI GCGC 1 cut(s) 1044
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 2 cut(s) 670, 685
BanII GRGCYC 2 cut(s) 88, 396
BauI CACGAG 2 cut(s) 81, 863
BbrPI CACGTG 2 cut(s) 665, 680
Bbv12I GWGCWC 4 cut(s) 88, 396, 670, 685
BbvI GCAGC 2 cut(s) 105, 898
BccI CCATC 4 cut(s) 85, 358, 368, 682
BcoDI GTCTC 4 cut(s) 13, 78, 962, 1054
BfaI CTAG 1 cut(s) 554
BfrI CTTAAG 1 cut(s) 122
BisI GCNGC 6 cut(s) 6, 119, 912, 1040, 1235, 1238
BlsI GCNGC 6 cut(s) 7, 120, 913, 1041, 1236, 1239
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 283
BmsI GCATC 3 cut(s) 50, 414, 1111
BoxI GACNNNNGTC 1 cut(s) 1169
BpmI CTGGAG 1 cut(s) 1078
BpuEI CTTGAG 2 cut(s) 257, 598
BsaAI YACGTR 3 cut(s) 665, 680, 1124
BsaJI CCNNGG 3 cut(s) 198, 473, 818
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 508
Bse1I ACTGG 5 cut(s) 342, 596, 891, 1061, 1117
Bse3DI GCAATG 2 cut(s) 91, 226
BseDI CCNNGG 3 cut(s) 198, 473, 818
BseGI GGATG 4 cut(s) 41, 429, 588, 1078
BseLI CCNNNNNNNGG 2 cut(s) 199, 508
BseMI GCAATG 2 cut(s) 91, 226
BseNI ACTGG 5 cut(s) 342, 596, 891, 1061, 1117
BseSI GKGCMC 2 cut(s) 670, 685
BseXI GCAGC 2 cut(s) 105, 898
Bsh1236I CGCG 4 cut(s) 312, 600, 1042, 1082
BshFI GGCC 1 cut(s) 1039
BsiHKAI GWGCWC 4 cut(s) 88, 396, 670, 685
BsiWI CGTACG 1 cut(s) 524
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 2 cut(s) 199, 508
BsmAI GTCTC 4 cut(s) 13, 78, 962, 1054
BsmFI GGGAC 1 cut(s) 602
BsnI GGCC 1 cut(s) 1039
Bsp1286I GDGCHC 4 cut(s) 88, 396, 670, 685
Bsp143I GATC 2 cut(s) 432, 694
Bsp19I CCATGG 1 cut(s) 198
Bsp68I TCGCGA 1 cut(s) 312
BspACI CCGC 3 cut(s) 400, 1040, 1235
BspANI GGCC 1 cut(s) 1039
BspFNI CGCG 4 cut(s) 312, 600, 1042, 1082
BspLI GGNNCC 1 cut(s) 283
BspPI GGATC 1 cut(s) 427
BspQI GCTCTTC 1 cut(s) 401
BspTI CTTAAG 1 cut(s) 122
BsrDI GCAATG 2 cut(s) 91, 226
BsrI ACTGG 5 cut(s) 342, 596, 891, 1061, 1117
BssECI CCNNGG 3 cut(s) 198, 473, 818
BssMI GATC 2 cut(s) 432, 694
BssSI CACGAG 2 cut(s) 81, 863
BssT1I CCWWGG 2 cut(s) 198, 473
Bst2BI CACGAG 2 cut(s) 81, 863
Bst4CI ACNGT 4 cut(s) 262, 491, 879, 1207
Bst6I CTCTTC 1 cut(s) 401
BstAFI CTTAAG 1 cut(s) 122
BstBAI YACGTR 3 cut(s) 665, 680, 1124
BstC8I GCNNGC 1 cut(s) 623
BstDEI CTNAG 3 cut(s) 265, 691, 963
BstDSI CCRYGG 2 cut(s) 198, 818
BstF5I GGATG 4 cut(s) 41, 429, 588, 1078
BstFNI CGCG 4 cut(s) 312, 600, 1042, 1082
BstHHI GCGC 1 cut(s) 1044
BstKTI GATC 2 cut(s) 435, 697
BstMAI GTCTC 4 cut(s) 13, 78, 962, 1054
BstMBI GATC 2 cut(s) 432, 694
BstMWI GCNNNNNNNGC 2 cut(s) 184, 1160
BstNSI RCATGY 1 cut(s) 781
BstPAI GACNNNNGTC 1 cut(s) 1169
BstSLI GKGCMC 2 cut(s) 670, 685
BstSNI TACGTA 1 cut(s) 1124
BstUI CGCG 4 cut(s) 312, 600, 1042, 1082
BstV1I GCAGC 2 cut(s) 105, 898
BsuRI GGCC 1 cut(s) 1039
BtgI CCRYGG 2 cut(s) 198, 818
BtsCI GGATG 4 cut(s) 41, 429, 588, 1078
BtsIMutI CAGTG 2 cut(s) 349, 884
BtuMI TCGCGA 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 623
CfoI GCGC 1 cut(s) 1044
Cfr13I GGNCC 1 cut(s) 167
CseI GACGC 1 cut(s) 589
Csp6I GTAC 3 cut(s) 525, 571, 1125
CviAII CATG 5 cut(s) 23, 113, 199, 420, 778
CviQI GTAC 3 cut(s) 525, 571, 1125
DdeI CTNAG 3 cut(s) 265, 691, 963
DpnI GATC 2 cut(s) 434, 696
DpnII GATC 2 cut(s) 432, 694
DraI TTTAAA 1 cut(s) 1135
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Ecl136II GAGCTC 2 cut(s) 86, 394
Eco105I TACGTA 1 cut(s) 1124
Eco130I CCWWGG 2 cut(s) 198, 473
Eco24I GRGCYC 2 cut(s) 88, 396
Eco47I GGWCC 1 cut(s) 167
Eco53kI GAGCTC 2 cut(s) 86, 394
Eco72I CACGTG 2 cut(s) 665, 680
EcoICRI GAGCTC 2 cut(s) 86, 394
EcoRI GAATTC 1 cut(s) 813
EcoT14I CCWWGG 2 cut(s) 198, 473
EcoT38I GRGCYC 2 cut(s) 88, 396
ErhI CCWWGG 2 cut(s) 198, 473
FaeI CATG 5 cut(s) 26, 116, 202, 423, 781
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 1 cut(s) 602
FatI CATG 5 cut(s) 22, 112, 198, 419, 777
Fnu4HI GCNGC 6 cut(s) 6, 119, 912, 1040, 1235, 1238
FokI GGATG 4 cut(s) 28, 436, 595, 1085
FriOI GRGCYC 2 cut(s) 88, 396
Fsp4HI GCNGC 6 cut(s) 6, 119, 912, 1040, 1235, 1238
FspBI CTAG 1 cut(s) 554
GlaI GCGC 1 cut(s) 1043
GluI GCNGC 6 cut(s) 6, 119, 912, 1040, 1235, 1238
GsuI CTGGAG 1 cut(s) 1078
HaeIII GGCC 1 cut(s) 1039
HgaI GACGC 1 cut(s) 589
HhaI GCGC 1 cut(s) 1044
Hin1II CATG 5 cut(s) 26, 116, 202, 423, 781
Hin6I GCGC 1 cut(s) 1042
HinP1I GCGC 1 cut(s) 1042
HinfI GANTC 3 cut(s) 105, 845, 1062
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 4 cut(s) 573, 668, 683, 1078
Hpy188I TCNGA 4 cut(s) 281, 544, 699, 940
Hpy188III TCNNGA 6 cut(s) 81, 236, 311, 410, 554, 1070
Hpy8I GTNNAC 4 cut(s) 573, 668, 683, 1078
HpyAV CCTTC 3 cut(s) 242, 611, 802
HpyCH4III ACNGT 4 cut(s) 262, 491, 879, 1207
HpyCH4IV ACGT 4 cut(s) 664, 679, 935, 1123
HpyCH4V TGCA 7 cut(s) 8, 96, 187, 226, 427, 668, 683
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 1160
HpyF3I CTNAG 3 cut(s) 265, 691, 963
HpySE526I ACGT 4 cut(s) 664, 679, 935, 1123
Hsp92II CATG 5 cut(s) 26, 116, 202, 423, 781
HspAI GCGC 1 cut(s) 1042
Kzo9I GATC 2 cut(s) 432, 694
LguI GCTCTTC 1 cut(s) 401
LmnI GCTCC 2 cut(s) 281, 922
LpnPI CCDG 8 cut(s) 80, 355, 395, 479, 577, 904, 1042, 1130
Lsp1109I GCAGC 2 cut(s) 105, 898
LweI GCATC 3 cut(s) 50, 414, 1111
MaeI CTAG 1 cut(s) 554
MaeII ACGT 4 cut(s) 664, 679, 935, 1123
MaeIII GTNAC 4 cut(s) 724, 1052, 1119, 1180
MalI GATC 2 cut(s) 434, 696
MboI GATC 2 cut(s) 432, 694
MboII GAAGA 4 cut(s) 146, 335, 388, 696
MfeI CAATTG 2 cut(s) 162, 1045
MhlI GDGCHC 4 cut(s) 88, 396, 670, 685
MluI ACGCGT 2 cut(s) 598, 1080
MlyI GAGTC 1 cut(s) 1056
MmeI TCCRAC 3 cut(s) 259, 278, 900
MnlI CCTC 9 cut(s) 55, 120, 262, 446, 512, 573, 730, 766, 913
MroXI GAANNNNTTC 1 cut(s) 1021
MseI TTAA 4 cut(s) 123, 210, 338, 1134
MslI CAYNNNNRTG 3 cut(s) 27, 203, 837
MspCI CTTAAG 1 cut(s) 122
MunI CAATTG 2 cut(s) 162, 1045
MvnI CGCG 4 cut(s) 312, 600, 1042, 1082
MwoI GCNNNNNNNGC 2 cut(s) 184, 1160
NcoI CCATGG 1 cut(s) 198
NdeII GATC 2 cut(s) 432, 694
NlaIII CATG 5 cut(s) 26, 116, 202, 423, 781
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 724
NruI TCGCGA 1 cut(s) 312
NspI RCATGY 1 cut(s) 781
PciI ACATGT 1 cut(s) 777
PciSI GCTCTTC 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 1021
PfeI GAWTC 2 cut(s) 105, 845
Pfl23II CGTACG 1 cut(s) 524
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 6 cut(s) 7, 120, 913, 1041, 1236, 1239
PleI GAGTC 1 cut(s) 1056
PmaCI CACGTG 2 cut(s) 665, 680
PmlI CACGTG 2 cut(s) 665, 680
PpsI GAGTC 1 cut(s) 1056
Ppu21I YACGTR 3 cut(s) 665, 680, 1124
PscI ACATGT 1 cut(s) 777
PshAI GACNNNNGTC 1 cut(s) 1169
Psp124BI GAGCTC 2 cut(s) 88, 396
PspCI CACGTG 2 cut(s) 665, 680
PspLI CGTACG 1 cut(s) 524
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 167
RruI TCGCGA 1 cut(s) 312
RsaI GTAC 3 cut(s) 526, 572, 1126
RsaNI GTAC 3 cut(s) 525, 571, 1125
RseI CAYNNNNRTG 3 cut(s) 27, 203, 837
SacI GAGCTC 2 cut(s) 88, 396
SapI GCTCTTC 1 cut(s) 401
SaqAI TTAA 4 cut(s) 123, 210, 338, 1134
SatI GCNGC 6 cut(s) 6, 119, 912, 1040, 1235, 1238
Sau3AI GATC 2 cut(s) 432, 694
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 1 cut(s) 1056
SduI GDGCHC 4 cut(s) 88, 396, 670, 685
SfaNI GCATC 3 cut(s) 50, 414, 1111
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 3 cut(s) 27, 203, 837
SmlI CTYRAG 3 cut(s) 122, 236, 577
SmoI CTYRAG 3 cut(s) 122, 236, 577
SnaBI TACGTA 1 cut(s) 1124
SsiI CCGC 3 cut(s) 400, 1040, 1235
SspI AATATT 3 cut(s) 36, 305, 331
SspMI CTAG 1 cut(s) 554
SstI GAGCTC 2 cut(s) 88, 396
StyI CCWWGG 2 cut(s) 198, 473
TaaI ACNGT 4 cut(s) 262, 491, 879, 1207
TaiI ACGT 4 cut(s) 667, 682, 938, 1126
TaqI TCGA 3 cut(s) 372, 783, 970
TauI GCSGC 2 cut(s) 1042, 1237
TfiI GAWTC 2 cut(s) 105, 845
Tru1I TTAA 4 cut(s) 123, 210, 338, 1134
Tru9I TTAA 4 cut(s) 123, 210, 338, 1134
TscAI CASTG 2 cut(s) 349, 884
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 4 cut(s) 5, 118, 911, 1237
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 5 cut(s) 39, 45, 336, 821, 888
TspGWI ACGGA 2 cut(s) 593, 835
TspRI CASTG 2 cut(s) 349, 884
Van91I CCANNNNNTGG 1 cut(s) 199
Vha464I CTTAAG 1 cut(s) 122
VneI GTGCAC 2 cut(s) 666, 681
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 2 cut(s) 813, 1156
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 1 cut(s) 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 1021
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.