Rroxscaffold_2G00087230

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000351
Physical Location & Seq
Reverse (-)
9306250 .. 9308422
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087230.1

Sequence Viewer

Length: 945 bp
ATGACAGCTGCTTTGACTCGAGGCACCAAGGACATAAGTGAAGATACTCTGCTGAGAAAGAGCAATATGGATAACGACCACACCTGGATTGAAATTAGAGAAGATGAAGGGAATTTGACAGGAGCAGATAATGTGGAGGAGCAAATTTTGAGTGACAATAGAAATGATGAAGACAAATTATTAGCATCATCGATTCGAGGAAAGTTTTTAGAGCCACCTCCATCGCCACCTTGCATATTTAAAATTCCCAAGATGCTTCAGGGTCCTAATGAAGCCGAGTTGATACTTCCAAAGTTAGTATCAATTGGGCCATATCACCATGGTAAAAAGAACCTGCAAACCATGGAAAGAATAAAATTATGCTACTTGCATTGCCTCTTCAATCGAACACCAACTCCTGACACCACTTTGAAGCACTTGGTCAAAAGAGTTAGAGCTATAGAACAAGCTTGTCGTGATTGCTATGACGAAAAAATTGATATGAGTAGTCACCTGTTTGTAGAAATGATGGTGGTTGATGGTTGCTTTGTTATTGAGTTCATGCTCGGAAGGACATACAGCAAGATTCTTCGGAATGATCCTCTGTCCCAAAGTTCATGGATGCGCACCCCACTTATATCAGATTTGTTTCTACTGGAAAACCAGTTGCCTTGGTTAGTTCTTGATTGTTTATTCCAATATCTTGTAAAAGAAAATGCTGACGATGAACCTGTTGGAAAGCATAAGTTTCTGTCTGAGCTTACTCTCAAATTTTGTCAGTTGCACACCATGCGTTTTCTAAAGCCAAATGATGGAGCATCCGAAATCAGGCATTTACTTGACCACATAAGAATTGGTATAGTTGGGGCAGAAAAGCTAACCATCAGTTCACGTCGTTATTTGGTTCCCTCTGTGACAGAACTCCGGCAAATTGGAGTCATATTTAAACGTGGAGACATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

314

Amino Acids

36.08

Weight (kDa)

6.38

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 79 - 310 8.7e-56 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 605
Acc36I ACCTGC 1 cut(s) 342
AccB1I GGYRCC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 791
AclWI GGATC 1 cut(s) 572
AcsI RAATTY 4 cut(s) 112, 144, 243, 749
AcuI CTGAAG 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 791, 807
AflIII ACRYGT 1 cut(s) 936
AgsI TTSAA 3 cut(s) 92, 382, 412
AjiI CACGTC 1 cut(s) 872
AjnI CCWGG 1 cut(s) 83
AloI GAACNNNNNNTCC 2 cut(s) 379, 411
AluBI AGCT 5 cut(s) 8, 437, 449, 739, 856
AluI AGCT 5 cut(s) 8, 437, 449, 739, 856
Alw26I GTCTC 1 cut(s) 927
AlwI GGATC 1 cut(s) 572
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 4 cut(s) 112, 144, 243, 749
ArsI GACNNNNNNTTYG 1 cut(s) 27
AspLEI GCGC 1 cut(s) 606
AspS9I GGNCC 2 cut(s) 263, 308
AsuHPI GGTGA 2 cut(s) 308, 482
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 1 cut(s) 263
BanI GGYRCC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 177
BccI CCATC 5 cut(s) 229, 502, 512, 785, 869
BciT130I CCWGG 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 927
BfmI CTRYAG 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 342
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 1 cut(s) 18
BmgBI CACGTC 1 cut(s) 872
BmgT120I GGNCC 2 cut(s) 263, 308
BmiI GGNNCC 3 cut(s) 25, 264, 885
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 4 cut(s) 194, 243, 591, 806
BpiI GAAGAC 1 cut(s) 177
Bsa29I ATCGAT 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 27, 319, 342, 650
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 791, 807
Bse1I ACTGG 2 cut(s) 639, 643
Bse3DI GCAATG 1 cut(s) 370
BseBI CCWGG 1 cut(s) 85
BseCI ATCGAT 1 cut(s) 191
BseDI CCNNGG 4 cut(s) 27, 319, 342, 650
BseGI GGATG 2 cut(s) 606, 797
BseLI CCNNNNNNNGG 2 cut(s) 791, 807
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 44, 726
BseNI ACTGG 2 cut(s) 639, 643
BseRI GAGGAG 1 cut(s) 152
BshFI GGCC 1 cut(s) 310
BshNI GGYRCC 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 904
BslFI GGGAC 1 cut(s) 571
BslI CCNNNNNNNGG 2 cut(s) 791, 807
BsmAI GTCTC 1 cut(s) 927
BsmFI GGGAC 1 cut(s) 571
BsnI GGCC 1 cut(s) 310
BsoBI CYCGRG 1 cut(s) 18
Bsp143I GATC 1 cut(s) 577
Bsp19I CCATGG 2 cut(s) 319, 342
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 2 cut(s) 45, 727
BspDI ATCGAT 1 cut(s) 191
BspLI GGNNCC 3 cut(s) 25, 264, 885
BspMI ACCTGC 1 cut(s) 342
BspPI GGATC 1 cut(s) 572
BspT107I GGYRCC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 2 cut(s) 639, 643
BssECI CCNNGG 4 cut(s) 27, 319, 342, 650
BssMI GATC 1 cut(s) 577
BssT1I CCWWGG 4 cut(s) 27, 319, 342, 650
Bst2UI CCWGG 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 383
BstAPI GCANNNNNTGC 1 cut(s) 769
BstDEI CTNAG 2 cut(s) 53, 735
BstDSI CCRYGG 2 cut(s) 319, 342
BstF5I GGATG 2 cut(s) 606, 797
BstHHI GCGC 1 cut(s) 606
BstKTI GATC 1 cut(s) 580
BstMAI GTCTC 1 cut(s) 927
BstMBI GATC 1 cut(s) 577
BstMWI GCNNNNNNNGC 1 cut(s) 769
BstNI CCWGG 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 940
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 438
BstV2I GAAGAC 1 cut(s) 177
Bsu15I ATCGAT 1 cut(s) 191
BsuRI GGCC 1 cut(s) 310
BsuTUI ATCGAT 1 cut(s) 191
BtgI CCRYGG 2 cut(s) 319, 342
BtgZI GCGATG 1 cut(s) 207
BtrI CACGTC 1 cut(s) 872
BtsCI GGATG 2 cut(s) 606, 797
BveI ACCTGC 1 cut(s) 342
CfoI GCGC 1 cut(s) 606
Cfr13I GGNCC 2 cut(s) 263, 308
ClaI ATCGAT 1 cut(s) 191
CviAII CATG 6 cut(s) 320, 343, 541, 597, 769, 937
CviJI RGCY 9 cut(s) 8, 214, 275, 310, 437, 449, 739, 784, 856
CviKI_1 RGCY 9 cut(s) 8, 214, 275, 310, 437, 449, 739, 784, 856
DdeI CTNAG 2 cut(s) 53, 735
DpnI GATC 1 cut(s) 579
DpnII GATC 1 cut(s) 577
DraI TTTAAA 2 cut(s) 241, 925
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
Eco130I CCWWGG 4 cut(s) 27, 319, 342, 650
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 83
EcoT14I CCWWGG 4 cut(s) 27, 319, 342, 650
ErhI CCWWGG 4 cut(s) 27, 319, 342, 650
FaeI CATG 6 cut(s) 323, 346, 544, 600, 772, 940
FaqI GGGAC 1 cut(s) 571
FatI CATG 6 cut(s) 319, 342, 540, 596, 768, 936
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 2 cut(s) 613, 784
Fsp4HI GCNGC 1 cut(s) 9
FspAI RTGCGCAY 1 cut(s) 605
FspI TGCGCA 1 cut(s) 605
GlaI GCGC 1 cut(s) 605
GluI GCNGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 904
HhaI GCGC 1 cut(s) 606
Hin1II CATG 6 cut(s) 323, 346, 544, 600, 772, 940
Hin6I GCGC 1 cut(s) 604
HinP1I GCGC 1 cut(s) 604
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 4 cut(s) 16, 193, 565, 915
HpaII CCGG 1 cut(s) 904
HphI GGTGA 2 cut(s) 308, 482
Hpy166II GTNNAC 1 cut(s) 869
Hpy188I TCNGA 5 cut(s) 548, 573, 622, 736, 802
Hpy188III TCNNGA 4 cut(s) 398, 455, 662, 942
Hpy8I GTNNAC 1 cut(s) 869
Hpy99I CGWCG 1 cut(s) 876
HpyAV CCTTC 2 cut(s) 101, 543
HpyCH4IV ACGT 2 cut(s) 871, 928
HpyCH4V TGCA 4 cut(s) 234, 337, 370, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 769
HpyF3I CTNAG 2 cut(s) 53, 735
HpySE526I ACGT 2 cut(s) 871, 928
Hsp92II CATG 6 cut(s) 323, 346, 544, 600, 772, 940
HspAI GCGC 1 cut(s) 604
Kzo9I GATC 1 cut(s) 577
LmnI GCTCC 3 cut(s) 122, 139, 794
LweI GCATC 4 cut(s) 194, 243, 591, 806
MaeII ACGT 2 cut(s) 871, 928
MaeIII GTNAC 3 cut(s) 152, 488, 892
MalI GATC 1 cut(s) 579
MboI GATC 1 cut(s) 577
MboII GAAGA 5 cut(s) 53, 113, 182, 370, 560
MfeI CAATTG 1 cut(s) 303
MlyI GAGTC 2 cut(s) 10, 924
MmeI TCCRAC 1 cut(s) 694
MnlI CCTC 7 cut(s) 14, 130, 191, 228, 386, 591, 898
MseI TTAA 2 cut(s) 240, 924
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 904
MspR9I CCNGG 1 cut(s) 85
MunI CAATTG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 769
NcoI CCATGG 2 cut(s) 319, 342
NdeII GATC 1 cut(s) 577
NlaIII CATG 6 cut(s) 323, 346, 544, 600, 772, 940
NlaIV GGNNCC 3 cut(s) 25, 264, 885
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 3 cut(s) 152, 488, 892
NsbI TGCGCA 1 cut(s) 605
NspI RCATGY 1 cut(s) 940
PaeR7I CTCGAG 1 cut(s) 18
PciI ACATGT 1 cut(s) 936
PfeI GAWTC 2 cut(s) 193, 565
PflMI CCANNNNNTGG 1 cut(s) 791
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 2 cut(s) 10, 923
PpsI GAGTC 2 cut(s) 10, 923
PpuMI RGGWCCY 1 cut(s) 263
PscI ACATGT 1 cut(s) 936
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 3 cut(s) 25, 264, 885
PspPI GGNCC 2 cut(s) 263, 308
PspPPI RGGWCCY 1 cut(s) 263
PspXI VCTCGAGB 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 8
SaqAI TTAA 2 cut(s) 240, 924
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 577
Sau96I GGNCC 2 cut(s) 263, 308
SchI GAGTC 2 cut(s) 10, 924
ScrFI CCNGG 1 cut(s) 85
SfaNI GCATC 4 cut(s) 194, 243, 591, 806
SfcI CTRYAG 1 cut(s) 438
Sfr274I CTCGAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 263
SlaI CTCGAG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 83
StyI CCWWGG 4 cut(s) 27, 319, 342, 650
TaiI ACGT 2 cut(s) 874, 931
TaqI TCGA 4 cut(s) 19, 191, 196, 385
TfiI GAWTC 2 cut(s) 193, 565
Tru1I TTAA 2 cut(s) 240, 924
Tru9I TTAA 2 cut(s) 240, 924
TseFI GTSAC 3 cut(s) 152, 488, 892
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 3 cut(s) 152, 488, 892
TspDTI ATGAA 6 cut(s) 120, 183, 285, 529, 585, 720
Van91I CCANNNNNTGG 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 4 cut(s) 112, 144, 243, 749
XceI RCATGY 1 cut(s) 940
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XhoI CTCGAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.