MD17G1243200.v1.1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000351
Physical Location & Seq
Forward (+)
29202734 .. 29203843
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1243200.v1.1.491

Sequence Viewer

Length: 1110 bp
ATGGAACAAATTAAGCTATGGAATTTGCAACGCCTCCTCGATCGCAAACCAACTCCAGACACCAGTTTGGTGAAGTTTGTCAAAGAAATTAGAAGCAGAGAAGAGTTTCTTCGTAGCTGCTATGACGAAAAGATTGATCATCTGAGTAGCGATCAGTTTGTAGAAATGATGGTGGCCGATGGTTGCTTTATTATACAAGTTATCCGCGCATGCATGGTGAATAAAGATCGTGATCCTTATGGTGTTTTGAGTCTGCCAGGGATGTTGTCGAGAGTTCAAAACGACTTGTTTCTGCTTGAAAACCAGCTTCCGTGGAAAGTTCTCGACTGCTTATTCAACCTCACAACATCAGACAAGTCTTCTCTACATGAACTCACTTTGGACCTAACTTGCGAAATTATGAATAATCCGATTATTACTTATTACTTAGGATACAAATTTATGGATAAGCTTAGGACGACATGGCAATTTAGACATTTACTCACCAATGTAAGAGATTTGCTTGTTGGATCATCAACGAGGAATGAGGACATTGAGGAGATGCGTTACAAATACTGGACTGCTATTCCCTCAGTGACACATCTTGAGGAAATTGGAGTCCAATTTCAATGTGCACCCCTGCATACATGTCTGTTGAACATAAATTTCAACTTCGAAAAGGGAGTGATGGAAATTCCGTGGATGAAAATTCGAGCGAACACAGAATCTCTCTTCAGAAACCTCATAGCATACGAACAGTGTTCACTGATGCCCCATTACATTTTGTCCTATGCCACGATGTTCAATCAGCTCATCAAGTCTACCAAAGATTTAGACCATCTCATTCAGAAAGGAATTATATACACCGAGTTGAGCAAGGAGGACACTGTTTTTTTGTTCAGAAGGCTTTGCAATGACACTGAATGTATCTCGTTCCTTTACTCTAAACTCGCAAACGATGTGGATAGATATTCGCACTGTCATTGGCGAAGGAGTTGGCTTGCAGGGATCAAAAGGGATTATCTATACAATCCATCGTCAATCTGGTCAGTTTCAAATGCGGTCATCATTGTTCTCATTCTTACCATCATACAAACCGTATATAGTGTTCTCGCCTACTACAAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

370

Amino Acids

43.53

Weight (kDa)

6.51

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 352 3.5e-78 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 800
AccII CGCG 1 cut(s) 207
AciI CCGC 2 cut(s) 205, 1040
AclWI GGATC 3 cut(s) 227, 517, 995
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 5 cut(s) 22, 437, 643, 672, 687
AcuI CTGAAG 1 cut(s) 697
AflIII ACRYGT 1 cut(s) 626
AgsI TTSAA 8 cut(s) 278, 299, 337, 608, 637, 649, 784, 1035
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 5 cut(s) 16, 117, 307, 451, 790
AluI AGCT 5 cut(s) 16, 117, 307, 451, 790
Alw21I GWGCWC 1 cut(s) 616
Alw44I GTGCAC 1 cut(s) 612
AlwI GGATC 3 cut(s) 227, 517, 995
AoxI GGCC 1 cut(s) 174
ApaLI GTGCAC 1 cut(s) 612
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 5 cut(s) 22, 437, 643, 672, 687
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 3 cut(s) 82, 229, 475
AsuII TTCGAA 1 cut(s) 654
AvaII GGWCC 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 616
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 1 cut(s) 104
BccI CCATC 6 cut(s) 163, 173, 661, 825, 1021, 1073
BciT130I CCWGG 1 cut(s) 258
BciVI GTATCC 1 cut(s) 425
BclI TGATCA 1 cut(s) 136
BfuI GTATCC 1 cut(s) 425
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 2 cut(s) 531, 738
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 452
Bpu14I TTCGAA 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 605
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 257, 311, 677
Bse1I ACTGG 2 cut(s) 63, 560
Bse3DI GCAATG 1 cut(s) 898
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 257, 311, 677
BseGI GGATG 2 cut(s) 267, 687
BseJI GATNNNNATC 1 cut(s) 231
BseMI GCAATG 1 cut(s) 898
BseMII CTCAG 2 cut(s) 134, 585
BseNI ACTGG 2 cut(s) 63, 560
BseRI GAGGAG 2 cut(s) 26, 551
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 616
BsnI GGCC 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 654
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 7 cut(s) 40, 136, 151, 226, 232, 509, 987
BspACI CCGC 2 cut(s) 205, 1040
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 135, 584
BspFNI CGCG 1 cut(s) 207
BspPI GGATC 3 cut(s) 227, 517, 995
BspT104I TTCGAA 1 cut(s) 654
BsrDI GCAATG 1 cut(s) 898
BsrI ACTGG 2 cut(s) 63, 560
BssECI CCNNGG 3 cut(s) 257, 311, 677
BssMI GATC 7 cut(s) 40, 136, 151, 226, 232, 509, 987
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 5 cut(s) 738, 868, 959, 1078, 1107
Bst6I CTCTTC 2 cut(s) 96, 716
BstBI TTCGAA 1 cut(s) 654
BstC8I GCNNGC 2 cut(s) 211, 981
BstDEI CTNAG 4 cut(s) 143, 427, 452, 571
BstDSI CCRYGG 2 cut(s) 311, 677
BstF5I GGATG 2 cut(s) 267, 687
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 7 cut(s) 43, 139, 154, 229, 235, 512, 990
BstMBI GATC 7 cut(s) 40, 136, 151, 226, 232, 509, 987
BstMCI CGRYCG 1 cut(s) 43
BstNI CCWGG 1 cut(s) 258
BstNSI RCATGY 2 cut(s) 213, 630
BstSCI CCNGG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 616
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 351
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 1 cut(s) 176
BtgI CCRYGG 2 cut(s) 311, 677
BtsCI GGATG 2 cut(s) 267, 687
BtsIMutI CAGTG 6 cut(s) 579, 743, 743, 864, 897, 955
Cac8I GCNNGC 2 cut(s) 211, 981
CfoI GCGC 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 382
CspCI CAANNNNNGTGG 2 cut(s) 921, 956
CviAII CATG 5 cut(s) 210, 214, 368, 462, 627
CviJI RGCY 8 cut(s) 16, 117, 176, 307, 451, 790, 886, 979
CviKI_1 RGCY 8 cut(s) 16, 117, 176, 307, 451, 790, 886, 979
DdeI CTNAG 4 cut(s) 143, 427, 452, 571
DpnI GATC 7 cut(s) 42, 138, 153, 228, 234, 511, 989
DpnII GATC 7 cut(s) 40, 136, 151, 226, 232, 509, 987
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 96, 716
EarI CTCTTC 2 cut(s) 96, 716
Eco47I GGWCC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 256
EcoT22I ATGCAT 1 cut(s) 215
FaeI CATG 5 cut(s) 213, 217, 371, 465, 630
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 5 cut(s) 209, 213, 367, 461, 626
FbaI TGATCA 1 cut(s) 136
FblI GTMKAC 1 cut(s) 800
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 2 cut(s) 274, 694
Fsp4HI GCNGC 1 cut(s) 118
GlaI GCGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 176
HhaI GCGC 1 cut(s) 209
Hin1II CATG 5 cut(s) 213, 217, 371, 465, 630
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 3 cut(s) 250, 597, 704
HphI GGTGA 3 cut(s) 82, 229, 475
Hpy166II GTNNAC 3 cut(s) 614, 743, 801
Hpy188I TCNGA 6 cut(s) 144, 352, 411, 716, 828, 881
Hpy188III TCNNGA 5 cut(s) 56, 230, 270, 323, 584
Hpy8I GTNNAC 3 cut(s) 614, 743, 801
HpyAV CCTTC 2 cut(s) 876, 963
HpyCH4III ACNGT 5 cut(s) 738, 868, 959, 1078, 1107
HpyCH4V TGCA 6 cut(s) 28, 213, 614, 622, 891, 983
HpyF3I CTNAG 4 cut(s) 143, 427, 452, 571
Hsp92II CATG 5 cut(s) 213, 217, 371, 465, 630
HspAI GCGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 7 cut(s) 40, 136, 151, 226, 232, 509, 987
LpnPI CCDG 9 cut(s) 69, 76, 243, 270, 317, 541, 632, 969, 1009
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 2 cut(s) 531, 738
MaeIII GTNAC 2 cut(s) 545, 574
MalI GATC 7 cut(s) 42, 138, 153, 228, 234, 511, 989
MboI GATC 7 cut(s) 40, 136, 151, 226, 232, 509, 987
MboII GAAGA 4 cut(s) 101, 113, 351, 703
MhlI GDGCHC 1 cut(s) 616
MlyI GAGTC 2 cut(s) 259, 606
MmeI TCCRAC 1 cut(s) 487
Mph1103I ATGCAT 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
MvnI CGCG 1 cut(s) 207
NdeII GATC 7 cut(s) 40, 136, 151, 226, 232, 509, 987
NlaIII CATG 5 cut(s) 213, 217, 371, 465, 630
NmuCI GTSAC 1 cut(s) 574
NsiI ATGCAT 1 cut(s) 215
NspI RCATGY 2 cut(s) 213, 630
NspV TTCGAA 1 cut(s) 654
PaeI GCATGC 1 cut(s) 213
PciI ACATGT 1 cut(s) 626
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 704
PkrI GCNGC 1 cut(s) 119
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 2 cut(s) 258, 605
PpsI GAGTC 2 cut(s) 258, 605
PscI ACATGT 1 cut(s) 626
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspPI GGNCC 1 cut(s) 382
PsrI GAACNNNNNNTAC 2 cut(s) 1071, 1103
PvuI CGATCG 1 cut(s) 43
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 7 cut(s) 40, 136, 151, 226, 232, 509, 987
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 2 cut(s) 259, 606
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 616
SetI ASST 8 cut(s) 18, 119, 309, 342, 387, 453, 723, 792
SfaNI GCATC 2 cut(s) 531, 738
SfuI TTCGAA 1 cut(s) 654
SinI GGWCC 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
SphI GCATGC 1 cut(s) 213
SsiI CCGC 2 cut(s) 205, 1040
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 5 cut(s) 738, 868, 959, 1078, 1107
TaqI TCGA 5 cut(s) 39, 269, 324, 654, 691
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 6 cut(s) 579, 743, 750, 871, 904, 962
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 3 cut(s) 384, 416, 698
TspGWI ACGGA 2 cut(s) 300, 666
TspRI CASTG 6 cut(s) 579, 743, 750, 871, 904, 962
VneI GTGCAC 1 cut(s) 612
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 5 cut(s) 22, 437, 643, 672, 687
XceI RCATGY 2 cut(s) 213, 630
XcmI CCANNNNNNNNNTGG 1 cut(s) 1020
XmiI GTMKAC 1 cut(s) 800
XmnI GAANNNNTTC 1 cut(s) 105
Zsp2I ATGCAT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.