Rroxscaffold_2G00087180

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000351
Physical Location & Seq
Reverse (-)
9258386 .. 9291745
33360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087180.1

Sequence Viewer

Length: 852 bp
ATGGCAAACGTTGATCCAAAACCCGCATTCAACCGTAACCGTTCAAAAACTTTGAAGTTTGGATTAATCTGGAGCGTTGATCCAAAACCCGCATTCAACCCAGGTGGAGATGTATGTGTAGTTGGCAATAAGAGGGCCAAGGTCTTAAACTTCTTCCCATTCAAACCAACCGCATTGAGAAGAAACAATACCGTAGATCCAGGCAAGAACTTGCAAAGAGAAGCATTCAATATCAAAACTCGATCGACCATCCTTACATCTCCACAACGTCTTCTTATTCAATATGGGCCACTTCGAGCCTTCGTGGGCTCGGAAGGTCCACTAGCACTTGTTCACTCAACGGTGATGATGGCTTGGGCTTGCTCATTCCTTGGGCTAAGCACTAAGGCTGGCCATTTGGGCCAAAGAAACCGAACCAACAACATTTCGAACCGGCCCAAACCAATTTGGGCCAAAAACTCGCCCACTAAGCTTCTACTCGGCTCGGCTCGGCTCGGCTTAGCCGTACCGTTTGGTCGCTTTCGGCTCGGCTACGGTATGAAGCTTTACATACTTGGTGTCCAAACAGAGGATTTCCAATCCAGGTTGTCTTTGTGTATCGCAAATTTAGATCATTTGGTCAAAAGTATTAGAGTTATAGAGCAAGCTTGTCGCGATTGCTATGACGAAAGAGTTGATATGTGCAGTGATAAATTTGTACAAGTGATGGTGGTTGATGGTTGCTTCATACTTGAATTCATGCGCAAAAGGGCAGACATCAGGTTTCCTTCAAATGATCCTGTCTTTCAAAATTCATGGATGCGGTCCTCTGTTGAAATTGACCTGTTTCTACTGGAAAACCAGCTGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

283

Amino Acids

31.92

Weight (kDa)

9.99

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 201 - 283 8.5e-23 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 743
AccII CGCG 1 cut(s) 654
AciI CCGC 4 cut(s) 24, 90, 171, 802
AclI AACGTT 1 cut(s) 9
AclWI GGATC 4 cut(s) 8, 74, 191, 770
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 4 cut(s) 604, 692, 734, 790
AfaI GTAC 2 cut(s) 507, 699
AfiI CCNNNNNNNGG 1 cut(s) 568
AjnI CCWGG 3 cut(s) 100, 199, 581
AluBI AGCT 4 cut(s) 472, 544, 647, 844
AluI AGCT 4 cut(s) 472, 544, 647, 844
AlwI GGATC 4 cut(s) 8, 74, 191, 770
AoxI GGCC 6 cut(s) 135, 287, 391, 400, 434, 450
ApeKI GCWGC 1 cut(s) 844
ApoI RAATTY 4 cut(s) 604, 692, 734, 790
AseI ATTAAT 1 cut(s) 65
AspLEI GCGC 1 cut(s) 744
AspS9I GGNCC 7 cut(s) 135, 287, 317, 400, 435, 450, 804
AsuHPI GGTGA 1 cut(s) 355
AsuII TTCGAA 1 cut(s) 428
AvaII GGWCC 2 cut(s) 317, 804
BalI TGGCCA 1 cut(s) 393
BanII GRGCYC 1 cut(s) 311
BarI GAAGNNNNNNTAC 2 cut(s) 172, 204
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 831
BccI CCATC 4 cut(s) 257, 343, 700, 710
BceAI ACGGC 1 cut(s) 488
BcgI CGANNNNNNTGC 2 cut(s) 632, 666
BciT130I CCWGG 3 cut(s) 102, 201, 583
BfaI CTAG 1 cut(s) 323
BglI GCCNNNNNGGC 1 cut(s) 399
BisI GCNGC 1 cut(s) 845
BlpI GCTNAGC 2 cut(s) 377, 499
BlsI GCNGC 1 cut(s) 846
Bme1390I CCNGG 3 cut(s) 102, 201, 583
Bme18I GGWCC 2 cut(s) 317, 804
BmgT120I GGNCC 7 cut(s) 135, 287, 317, 400, 435, 450, 804
BmrFI CCNGG 3 cut(s) 102, 201, 583
BmsI GCATC 1 cut(s) 789
BpiI GAAGAC 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 91
Bpu1102I GCTNAGC 2 cut(s) 377, 499
Bpu14I TTCGAA 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 100, 138, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 568
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 1 cut(s) 837
BseBI CCWGG 3 cut(s) 102, 201, 583
BseDI CCNNGG 3 cut(s) 100, 138, 370
BseGI GGATG 2 cut(s) 249, 804
BseLI CCNNNNNNNGG 1 cut(s) 568
BseNI ACTGG 1 cut(s) 837
BseXI GCAGC 1 cut(s) 831
BsgI GTGCAG 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 654
Bsh1285I CGRYCG 1 cut(s) 245
BshFI GGCC 6 cut(s) 137, 289, 393, 402, 436, 452
BsiEI CGRYCG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 568
BsmI GAATGC 3 cut(s) 26, 92, 224
BsnI GGCC 6 cut(s) 137, 289, 393, 402, 436, 452
Bsp119I TTCGAA 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 311
Bsp1407I TGTACA 1 cut(s) 697
Bsp143I GATC 6 cut(s) 13, 79, 196, 242, 610, 775
Bsp1720I GCTNAGC 2 cut(s) 377, 499
Bsp68I TCGCGA 1 cut(s) 654
BspACI CCGC 4 cut(s) 24, 90, 171, 802
BspANI GGCC 6 cut(s) 137, 289, 393, 402, 436, 452
BspFNI CGCG 1 cut(s) 654
BspPI GGATC 4 cut(s) 8, 74, 191, 770
BspT104I TTCGAA 1 cut(s) 428
BsrFI RCCGGY 1 cut(s) 432
BsrGI TGTACA 1 cut(s) 697
BsrI ACTGG 1 cut(s) 837
BssAI RCCGGY 1 cut(s) 432
BssECI CCNNGG 3 cut(s) 100, 138, 370
BssMI GATC 6 cut(s) 13, 79, 196, 242, 610, 775
BssT1I CCWWGG 2 cut(s) 138, 370
Bst2UI CCWGG 3 cut(s) 102, 201, 583
Bst4CI ACNGT 6 cut(s) 35, 41, 193, 343, 510, 536
BstAUI TGTACA 1 cut(s) 697
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 3 cut(s) 361, 391, 645
BstDEI CTNAG 5 cut(s) 377, 384, 468, 499, 849
BstF5I GGATG 2 cut(s) 249, 804
BstFNI CGCG 1 cut(s) 654
BstHHI GCGC 1 cut(s) 744
BstKTI GATC 6 cut(s) 16, 82, 199, 245, 613, 778
BstMBI GATC 6 cut(s) 13, 79, 196, 242, 610, 775
BstMCI CGRYCG 1 cut(s) 245
BstMWI GCNNNNNNNGC 2 cut(s) 399, 469
BstNI CCWGG 3 cut(s) 102, 201, 583
BstSCI CCNGG 3 cut(s) 100, 199, 581
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 1 cut(s) 831
BstV2I GAAGAC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 6 cut(s) 137, 289, 393, 402, 436, 452
BtsCI GGATG 2 cut(s) 249, 804
BtsI GCAGTG 1 cut(s) 691
BtsIMutI CAGTG 1 cut(s) 691
BtuMI TCGCGA 1 cut(s) 654
Cac8I GCNNGC 3 cut(s) 361, 391, 645
CfoI GCGC 1 cut(s) 744
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 7 cut(s) 135, 287, 317, 400, 435, 450, 804
Csp6I GTAC 2 cut(s) 506, 698
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 2 cut(s) 739, 795
CviQI GTAC 2 cut(s) 506, 698
DdeI CTNAG 5 cut(s) 377, 384, 468, 499, 849
DpnI GATC 6 cut(s) 15, 81, 198, 244, 612, 777
DpnII GATC 6 cut(s) 13, 79, 196, 242, 610, 775
EaeI YGGCCR 1 cut(s) 391
Eco130I CCWWGG 2 cut(s) 138, 370
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 317, 804
EcoRI GAATTC 1 cut(s) 734
EcoRII CCWGG 3 cut(s) 100, 199, 581
EcoT14I CCWWGG 2 cut(s) 138, 370
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 2 cut(s) 138, 370
FaeI CATG 2 cut(s) 742, 798
FatI CATG 2 cut(s) 738, 794
FauI CCCGC 2 cut(s) 31, 97
Fnu4HI GCNGC 1 cut(s) 845
FokI GGATG 2 cut(s) 236, 811
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 845
FspBI CTAG 1 cut(s) 323
FspI TGCGCA 1 cut(s) 743
GlaI GCGC 1 cut(s) 743
GluI GCNGC 1 cut(s) 845
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 6 cut(s) 137, 289, 393, 402, 436, 452
HapII CCGG 1 cut(s) 433
HhaI GCGC 1 cut(s) 744
Hin1II CATG 2 cut(s) 742, 798
Hin6I GCGC 1 cut(s) 742
HinP1I GCGC 1 cut(s) 742
HindIII AAGCTT 3 cut(s) 470, 542, 645
HpaII CCGG 1 cut(s) 433
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 320, 334
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 2 cut(s) 70, 653
Hpy8I GTNNAC 2 cut(s) 320, 334
HpyAV CCTTC 3 cut(s) 308, 310, 777
HpyCH4III ACNGT 6 cut(s) 35, 41, 193, 343, 510, 536
HpyCH4IV ACGT 2 cut(s) 9, 268
HpyCH4V TGCA 2 cut(s) 214, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 399, 469
HpyF3I CTNAG 5 cut(s) 377, 384, 468, 499, 849
HpySE526I ACGT 2 cut(s) 9, 268
Hsp92II CATG 2 cut(s) 742, 798
HspAI GCGC 1 cut(s) 742
Kzo9I GATC 6 cut(s) 13, 79, 196, 242, 610, 775
LmnI GCTCC 1 cut(s) 72
Lsp1109I GCAGC 1 cut(s) 831
LweI GCATC 1 cut(s) 789
MaeI CTAG 1 cut(s) 323
MaeII ACGT 2 cut(s) 9, 268
MaeIII GTNAC 1 cut(s) 35
MalI GATC 6 cut(s) 15, 81, 198, 244, 612, 777
MboI GATC 6 cut(s) 13, 79, 196, 242, 610, 775
MboII GAAGA 3 cut(s) 145, 192, 263
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 311
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 6 cut(s) 444, 604, 692, 734, 790, 816
MluNI TGGCCA 1 cut(s) 393
MnlI CCTC 3 cut(s) 126, 562, 817
Mox20I TGGCCA 1 cut(s) 393
MscI TGGCCA 1 cut(s) 393
MseI TTAA 2 cut(s) 65, 146
Msp20I TGGCCA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 844
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 3 cut(s) 102, 201, 583
Mva1269I GAATGC 3 cut(s) 26, 92, 224
MvaI CCWGG 3 cut(s) 102, 201, 583
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 2 cut(s) 399, 469
NdeII GATC 6 cut(s) 13, 79, 196, 242, 610, 775
NlaIII CATG 2 cut(s) 742, 798
NmeAIII GCCGAG 5 cut(s) 459, 464, 469, 474, 507
NruI TCGCGA 1 cut(s) 654
NsbI TGCGCA 1 cut(s) 743
NspV TTCGAA 1 cut(s) 428
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PctI GAATGC 3 cut(s) 26, 92, 224
PkrI GCNGC 1 cut(s) 846
Ple19I CGATCG 1 cut(s) 245
PshBI ATTAAT 1 cut(s) 65
Psp1406I AACGTT 1 cut(s) 9
Psp6I CCWGG 3 cut(s) 100, 199, 581
PspGI CCWGG 3 cut(s) 100, 199, 581
PspPI GGNCC 7 cut(s) 135, 287, 317, 400, 435, 450, 804
PsuI RGATCY 1 cut(s) 196
PvuI CGATCG 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 844
RruI TCGCGA 1 cut(s) 654
RsaI GTAC 2 cut(s) 507, 699
RsaNI GTAC 2 cut(s) 506, 698
SaqAI TTAA 2 cut(s) 65, 146
SatI GCNGC 1 cut(s) 845
Sau3AI GATC 6 cut(s) 13, 79, 196, 242, 610, 775
Sau96I GGNCC 7 cut(s) 135, 287, 317, 400, 435, 450, 804
ScrFI CCNGG 3 cut(s) 102, 201, 583
SduI GDGCHC 1 cut(s) 311
SfaNI GCATC 1 cut(s) 789
SfiI GGCCNNNNNGGCC 1 cut(s) 399
SfuI TTCGAA 1 cut(s) 428
SinI GGWCC 2 cut(s) 317, 804
Sse9I AATT 6 cut(s) 444, 604, 692, 734, 790, 816
SsiI CCGC 4 cut(s) 24, 90, 171, 802
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 3 cut(s) 100, 199, 581
StyI CCWWGG 2 cut(s) 138, 370
TaaI ACNGT 6 cut(s) 35, 41, 193, 343, 510, 536
TaiI ACGT 2 cut(s) 12, 271
TaqI TCGA 4 cut(s) 241, 245, 295, 428
TasI AATT 6 cut(s) 444, 604, 692, 734, 790, 816
TatI WGTACW 1 cut(s) 697
Tru1I TTAA 2 cut(s) 65, 146
Tru9I TTAA 2 cut(s) 65, 146
TscAI CASTG 1 cut(s) 691
TseI GCWGC 1 cut(s) 844
TspDTI ATGAA 4 cut(s) 554, 715, 727, 783
TspRI CASTG 1 cut(s) 691
VpaK11BI GGWCC 2 cut(s) 317, 804
VspI ATTAAT 1 cut(s) 65
XapI RAATTY 4 cut(s) 604, 692, 734, 790
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.