RchiOBHm_Chr2g0163521

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000351
Physical Location & Seq
Forward (+)
78984044 .. 78984595
552 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53169

Sequence Viewer

Length: 552 bp
ATGGAGATTCCTCAGATTTTTGTTCACAAAAATGAATCTCTTTTTCTAAACCTCATTGCCCTTGAACAGTGTGAACAAGGGCGCATTGGATATGATTTTACCTCATATGCCAGGGTCCTGCATTACCTTATTAAGTCAGGCAAAGATGCAGACTTTCTCATGCAGAAGGGAATCATAAAAACCAGATTGAGCAAGGAGGACATAGCTCGTCTCTTCACCGGTGTTTGCAATAACACTACATTTGCTTCTGACTCTTTCTCTGATCTCTCCAGGGAAGTTCACTTGTTTTCCAAGGAGCGTTGGCTGCAGAGATGCCTAATTAGCATTAAACGGGATTATTTATACAATCCATCTTCAATCTGGTCAATTTCTAATGCGGTCTTCCTTGTCATAATTCTCACATTCACACAAACCTTATATACTGTTCTCTCTTACTACCAAGAAGCTAGCAATTGTCAATGTCATGTTGGGAACTATATTTGTTATATGGTTCCCATATCTGTTTCATTTCAAGTTGTAAACTCTGTTTGTACTTCTTGTTTGCTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

183

Amino Acids

21.01

Weight (kDa)

7.55

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 131 3.3e-26 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 377
AfaI GTAC 1 cut(s) 532
AgeI ACCGGT 1 cut(s) 218
AgsI TTSAA 3 cut(s) 65, 357, 512
AjnI CCWGG 2 cut(s) 110, 269
AluBI AGCT 2 cut(s) 206, 446
AluI AGCT 2 cut(s) 206, 446
Alw26I GTCTC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 304
AsiGI ACCGGT 1 cut(s) 218
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 208
AsuNHI GCTAGC 1 cut(s) 446
AvaII GGWCC 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 291
BccI CCATC 1 cut(s) 358
BciT130I CCWGG 2 cut(s) 112, 271
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 1 cut(s) 305
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 2 cut(s) 112, 271
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 2 cut(s) 116, 492
BmrFI CCNGG 2 cut(s) 112, 271
BmsI GCATC 2 cut(s) 136, 302
BmtI GCTAGC 1 cut(s) 450
BpiI GAAGAC 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 253
BsaJI CCNNGG 3 cut(s) 111, 270, 291
BsaWI WCCGGW 1 cut(s) 218
Bse118I RCCGGY 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 2 cut(s) 112, 271
BseDI CCNNGG 3 cut(s) 111, 270, 291
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 291
BshTI ACCGGT 1 cut(s) 218
BsiSI CCGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 215
BsmBI CGTCTC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 116, 492
BspMAI CTGCAG 1 cut(s) 309
BspOI GCTAGC 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 111, 270, 291
BssMI GATC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 2 cut(s) 112, 271
Bst4CI ACNGT 2 cut(s) 69, 424
Bst6I CTCTTC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 448
BstDEI CTNAG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 304, 321
BstNI CCWGG 2 cut(s) 112, 271
BstSCI CCNGG 2 cut(s) 110, 269
BstSFI CTRYAG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 448
CfoI GCGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 531
CspAI ACCGGT 1 cut(s) 218
CviAII CATG 2 cut(s) 160, 464
CviJI RGCY 3 cut(s) 206, 304, 446
CviKI_1 RGCY 3 cut(s) 206, 304, 446
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 115
EcoRII CCWGG 2 cut(s) 110, 269
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 2 cut(s) 163, 467
FatI CATG 2 cut(s) 159, 463
FauNDI CATATG 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 1 cut(s) 447
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 253
HapII CCGG 1 cut(s) 219
HhaI GCGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 163, 467
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 4 cut(s) 7, 35, 171, 251
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 4 cut(s) 25, 74, 280, 520
Hpy188I TCNGA 3 cut(s) 15, 250, 262
Hpy8I GTNNAC 4 cut(s) 25, 74, 280, 520
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 69, 424
HpyCH4V TGCA 5 cut(s) 121, 149, 163, 228, 307
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 321
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 2 cut(s) 163, 467
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 9 cut(s) 97, 123, 124, 131, 196, 232, 256, 283, 346
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 2 cut(s) 136, 302
MaeI CTAG 1 cut(s) 447
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 3 cut(s) 205, 345, 373
MfeI CAATTG 1 cut(s) 451
MluCI AATT 4 cut(s) 318, 366, 393, 451
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 4 cut(s) 21, 62, 112, 190
MseI TTAA 2 cut(s) 132, 327
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 2 cut(s) 112, 271
MunI CAATTG 1 cut(s) 451
MvaI CCWGG 2 cut(s) 112, 271
MwoI GCNNNNNNNGC 2 cut(s) 304, 321
NdeI CATATG 1 cut(s) 106
NdeII GATC 1 cut(s) 262
NheI GCTAGC 1 cut(s) 446
NlaIII CATG 2 cut(s) 163, 467
NlaIV GGNNCC 2 cut(s) 116, 492
PfeI GAWTC 3 cut(s) 7, 35, 171
PinAI ACCGGT 1 cut(s) 218
PkrI GCNGC 1 cut(s) 306
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PpuMI RGGWCCY 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 115
Psp6I CCWGG 2 cut(s) 110, 269
PspGI CCWGG 2 cut(s) 110, 269
PspN4I GGNNCC 2 cut(s) 116, 492
PspPI GGNCC 1 cut(s) 115
PspPPI RGGWCCY 1 cut(s) 115
PstI CTGCAG 1 cut(s) 309
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 2 cut(s) 132, 327
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 112, 271
SetI ASST 6 cut(s) 54, 104, 129, 208, 416, 448
SfaNI GCATC 2 cut(s) 136, 302
SfcI CTRYAG 1 cut(s) 305
SgrAI CRCCGGYG 1 cut(s) 218
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 4 cut(s) 318, 366, 393, 451
SsiI CCGC 1 cut(s) 377
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 2 cut(s) 110, 269
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 69, 424
TasI AATT 4 cut(s) 318, 366, 393, 451
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 3 cut(s) 7, 35, 171
Tru1I TTAA 2 cut(s) 132, 327
Tru9I TTAA 2 cut(s) 132, 327
TscAI CASTG 1 cut(s) 74
TseI GCWGC 1 cut(s) 304
TspDTI ATGAA 2 cut(s) 48, 495
TspRI CASTG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 357
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.