Rmu_sc0000235.1_g000044

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000235.1
OG0000351
Physical Location & Seq
Forward (+)
147405 .. 148760
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000235.1_g000044.1.cds

Sequence Viewer

Length: 1356 bp
atgacagaaagtagcataaatgatcacttgttgattgaaatccgaaatggaggaggatatgtcaatgtgaataagcagactctaagtggaaatagaattggagacgaattattagcatcccagattgcagataagttgagactgctgcccccattaccagttcctagttacatatttaacatccctactgttctgcgaagtcaggttgaaaataaggatttcggtactccggatttggtttcaattgggccatttcaccatggaaaaaagaacctgcaagccatggaagaaatcaaactgctgtatctgcattctctccttgatcgaaagccgactccacagaccaccttggagaactttgtcagagaaatccggagtatggaaggagattgtggtgattgctatgatggaaagatcaatgcgagtagtgatgactttgtggaagtgatggtggttgatacttgctttatcattgagctgtttcgaaagttttcaggagaggtgctcaaagaggagaatgatcctgtgttctttaggtcatggatgcgcacggctcttataaatgacttgcttctactttcgaaccagcttccttggaaagttctcagccgtttatctgagcttacgcaggaaacaggtaaacaccatcttcatgaccttattcacaagtacttcaagggcaacatatttggattgtctccacaagccaatggagaacttgaaaataaacatgtactagacttcttaagaaattgctttcttggctcatttgaaaccgaaatgtctgattttgaggacttgccttggagcacgattccctctgctaacgaacttttaaatgctggagtaaggattgcagttgggcatggaaatagcatgctcgacatcgatttccacgatggggttctgaaaattccgcccatgcgagttcagaagtacgaagtatccttccttagaaacctcatcgcatatgaacagtgtgcaccaattacaggtgtaatcacctcttatgttttgttgttaggtgacctcattaggacagagagagatgtacaaattctcatggataacggaattatacaaggcatctcaagtgaggagggtagagcctccttgttcaattgtctgtgtgctgacctcgaaatatgcagttccccttacacgggactccgtaaggatgtgaacaattttactcgaagaccgtggaacaaatggaaggcaaaattacgagttgattatttcaaggatccgaaggatgttctgaatcttggtttcggcgtcttcatcgtgacacttctgaccttcattcaaaccatatattccatggcgtcttactacaaaccgcaatcacaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

451

Amino Acids

51.23

Weight (kDa)

5.54

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
Acc16I TGCGCA 1 cut(s) 548
Acc36I ACCTGC 1 cut(s) 282
AccIII TCCGGA 2 cut(s) 229, 372
AciI CCGC 2 cut(s) 917, 1343
AclWI GGATC 3 cut(s) 515, 1241, 1254
AcsI RAATTY 2 cut(s) 912, 1056
AcyI GRCGYC 2 cut(s) 1278, 1328
AfaI GTAC 5 cut(s) 226, 671, 735, 938, 1053
AfiI CCNNNNNNNGG 5 cut(s) 379, 901, 992, 1162, 1163
AflII CTTAAG 1 cut(s) 745
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 9 cut(s) 38, 209, 243, 676, 722, 773, 1120, 1243, 1310
AluBI AGCT 3 cut(s) 478, 589, 622
AluI AGCT 3 cut(s) 478, 589, 622
Alw21I GWGCWC 3 cut(s) 507, 812, 985
Alw26I GTCTC 3 cut(s) 96, 133, 702
Alw44I GTGCAC 1 cut(s) 981
AlwI GGATC 3 cut(s) 515, 1241, 1254
Aor13HI TCCGGA 2 cut(s) 229, 372
AoxI GGCC 1 cut(s) 248
ApaLI GTGCAC 1 cut(s) 981
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 2 cut(s) 912, 1056
Asp700I GAANNNNTTC 1 cut(s) 490
AspLEI GCGC 1 cut(s) 549
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 4 cut(s) 248, 407, 994, 1037
AsuII TTCGAA 2 cut(s) 484, 581
BaeGI GKGCMC 1 cut(s) 985
BaeI ACNNNNGTAYC 2 cut(s) 287, 320
BamHI GGATCC 1 cut(s) 1246
BbsI GAAGAC 2 cut(s) 1204, 1273
Bbv12I GWGCWC 3 cut(s) 507, 812, 985
BbvI GCAGC 1 cut(s) 132
BccI CCATC 4 cut(s) 401, 442, 654, 893
BceAI ACGGC 2 cut(s) 567, 594
BciVI GTATCC 1 cut(s) 955
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 3 cut(s) 96, 133, 702
BfaI CTAG 2 cut(s) 165, 737
BfrI CTTAAG 1 cut(s) 745
BfuAI ACCTGC 1 cut(s) 282
BfuI GTATCC 1 cut(s) 955
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmcAI AGTACT 1 cut(s) 671
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 1248
BmsI GCATC 3 cut(s) 125, 534, 1095
BpiI GAAGAC 2 cut(s) 1204, 1273
BplI GAGNNNNNCTC 2 cut(s) 489, 521
BpmI CTGGAG 1 cut(s) 864
Bpu14I TTCGAA 2 cut(s) 484, 581
BpuEI CTTGAG 1 cut(s) 1075
Bsa29I ATCGAT 1 cut(s) 888
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 2 cut(s) 1278, 1328
BsaJI CCNNGG 7 cut(s) 259, 282, 348, 593, 803, 1202, 1323
BsaWI WCCGGW 2 cut(s) 229, 372
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 5 cut(s) 379, 901, 992, 1162, 1163
Bse1I ACTGG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 38
BseAI TCCGGA 2 cut(s) 229, 372
BseCI ATCGAT 1 cut(s) 888
BseDI CCNNGG 7 cut(s) 259, 282, 348, 593, 803, 1202, 1323
BseGI GGATG 5 cut(s) 116, 180, 549, 1183, 1261
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 5 cut(s) 379, 901, 992, 1162, 1163
BseMII CTCAG 2 cut(s) 609, 619
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 3 cut(s) 66, 527, 1112
BseSI GKGCMC 1 cut(s) 985
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 888
BsiHKAI GWGCWC 3 cut(s) 507, 812, 985
BsiSI CCGG 2 cut(s) 230, 373
BslFI GGGAC 1 cut(s) 1179
BslI CCNNNNNNNGG 5 cut(s) 379, 901, 992, 1162, 1163
BsmAI GTCTC 3 cut(s) 96, 133, 702
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 1179
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 1 cut(s) 250
Bsp119I TTCGAA 2 cut(s) 484, 581
Bsp1286I GDGCHC 3 cut(s) 507, 812, 985
Bsp13I TCCGGA 2 cut(s) 229, 372
Bsp1407I TGTACA 1 cut(s) 1051
Bsp143I GATC 5 cut(s) 22, 322, 414, 520, 1246
Bsp19I CCATGG 3 cut(s) 259, 282, 1323
BspACI CCGC 2 cut(s) 917, 1343
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 2 cut(s) 610, 618
BspDI ATCGAT 1 cut(s) 888
BspEI TCCGGA 2 cut(s) 229, 372
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 1248
BspMI ACCTGC 1 cut(s) 282
BspPI GGATC 3 cut(s) 515, 1241, 1254
BspT104I TTCGAA 2 cut(s) 484, 581
BspTI CTTAAG 1 cut(s) 745
BsrGI TGTACA 1 cut(s) 1051
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 7 cut(s) 259, 282, 348, 593, 803, 1202, 1323
BssMI GATC 5 cut(s) 22, 322, 414, 520, 1246
BssNI GRCGYC 2 cut(s) 1278, 1328
BssT1I CCWWGG 6 cut(s) 259, 282, 348, 593, 803, 1323
Bst4CI ACNGT 3 cut(s) 190, 978, 1203
BstACI GRCGYC 2 cut(s) 1278, 1328
BstAFI CTTAAG 1 cut(s) 745
BstAUI TGTACA 1 cut(s) 1051
BstBI TTCGAA 2 cut(s) 484, 581
BstC8I GCNNGC 2 cut(s) 279, 878
BstDEI CTNAG 4 cut(s) 83, 605, 618, 953
BstDSI CCRYGG 4 cut(s) 259, 282, 1202, 1323
BstEII GGTNACC 1 cut(s) 1025
BstF5I GGATG 5 cut(s) 116, 180, 549, 1183, 1261
BstHHI GCGC 1 cut(s) 549
BstKTI GATC 5 cut(s) 25, 325, 417, 523, 1249
BstMAI GTCTC 3 cut(s) 96, 133, 702
BstMBI GATC 5 cut(s) 22, 322, 414, 520, 1246
BstMWI GCNNNNNNNGC 2 cut(s) 307, 762
BstNSI RCATGY 2 cut(s) 734, 880
BstPI GGTNACC 1 cut(s) 1025
BstSLI GKGCMC 1 cut(s) 985
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 2 cut(s) 1204, 1273
BstX2I RGATCY 1 cut(s) 1246
BstYI RGATCY 1 cut(s) 1246
Bsu15I ATCGAT 1 cut(s) 888
BsuI GTATCC 1 cut(s) 955
BsuRI GGCC 1 cut(s) 250
BsuTUI ATCGAT 1 cut(s) 888
BtgI CCRYGG 4 cut(s) 259, 282, 1202, 1323
BtgZI GCGATG 1 cut(s) 949
BtsCI GGATG 5 cut(s) 116, 180, 549, 1183, 1261
BtsIMutI CAGTG 1 cut(s) 983
BveI ACCTGC 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 279, 878
CciI TCATGA 1 cut(s) 652
CfoI GCGC 1 cut(s) 549
Cfr13I GGNCC 1 cut(s) 248
ClaI ATCGAT 1 cut(s) 888
CseI GACGC 2 cut(s) 1267, 1317
Csp6I GTAC 5 cut(s) 225, 670, 734, 937, 1052
CviQI GTAC 5 cut(s) 225, 670, 734, 937, 1052
DdeI CTNAG 4 cut(s) 83, 605, 618, 953
DpnI GATC 5 cut(s) 24, 324, 416, 522, 1248
DpnII GATC 5 cut(s) 22, 322, 414, 520, 1246
DraI TTTAAA 1 cut(s) 837
EciI GGCGGA 1 cut(s) 906
Eco130I CCWWGG 6 cut(s) 259, 282, 348, 593, 803, 1323
Eco91I GGTNACC 1 cut(s) 1025
EcoO65I GGTNACC 1 cut(s) 1025
EcoT14I CCWWGG 6 cut(s) 259, 282, 348, 593, 803, 1323
ErhI CCWWGG 6 cut(s) 259, 282, 348, 593, 803, 1323
Esp3I CGTCTC 1 cut(s) 96
FaqI GGGAC 1 cut(s) 1179
FauNDI CATATG 1 cut(s) 970
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 5 cut(s) 103, 167, 556, 1190, 1268
Fsp4HI GCNGC 1 cut(s) 146
FspAI RTGCGCAY 1 cut(s) 548
FspBI CTAG 2 cut(s) 165, 737
FspI TGCGCA 1 cut(s) 548
GlaI GCGC 1 cut(s) 548
GluI GCNGC 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 1 cut(s) 250
HapII CCGG 2 cut(s) 230, 373
HgaI GACGC 2 cut(s) 1267, 1317
HhaI GCGC 1 cut(s) 549
Hin1I GRCGYC 2 cut(s) 1278, 1328
Hin6I GCGC 1 cut(s) 547
HinP1I GCGC 1 cut(s) 547
HinfI GANTC 5 cut(s) 79, 334, 814, 1167, 1264
HpaII CCGG 2 cut(s) 230, 373
HphI GGTGA 4 cut(s) 248, 407, 994, 1037
Hpy166II GTNNAC 3 cut(s) 641, 983, 1183
Hpy188I TCNGA 9 cut(s) 44, 365, 619, 787, 909, 933, 1251, 1263, 1299
Hpy188III TCNNGA 5 cut(s) 230, 373, 495, 653, 1288
Hpy8I GTNNAC 3 cut(s) 641, 983, 1183
HpyAV CCTTC 5 cut(s) 377, 958, 1210, 1246, 1312
HpyCH4III ACNGT 3 cut(s) 190, 978, 1203
HpyCH4V TGCA 6 cut(s) 128, 277, 310, 857, 983, 1149
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 762
HpyF3I CTNAG 4 cut(s) 83, 605, 618, 953
Hsp92I GRCGYC 2 cut(s) 1278, 1328
HspAI GCGC 1 cut(s) 547
Kpn2I TCCGGA 2 cut(s) 229, 372
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 5 cut(s) 22, 322, 414, 520, 1246
LmnI GCTCC 1 cut(s) 807
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 3 cut(s) 125, 534, 1095
MaeI CTAG 2 cut(s) 165, 737
MaeIII GTNAC 3 cut(s) 167, 1025, 1288
MalI GATC 5 cut(s) 24, 324, 416, 522, 1248
MboI GATC 5 cut(s) 22, 322, 414, 520, 1246
MboII GAAGA 4 cut(s) 299, 641, 1209, 1273
MfeI CAATTG 2 cut(s) 243, 1120
MflI RGATCY 1 cut(s) 1246
MhlI GDGCHC 3 cut(s) 507, 812, 985
MlyI GAGTC 3 cut(s) 73, 328, 1161
MroI TCCGGA 2 cut(s) 229, 372
MroXI GAANNNNTTC 1 cut(s) 490
MseI TTAA 3 cut(s) 177, 746, 836
MslI CAYNNNNRTG 1 cut(s) 651
MspCI CTTAAG 1 cut(s) 745
MspI CCGG 2 cut(s) 230, 373
MunI CAATTG 2 cut(s) 243, 1120
Mva1269I GAATGC 1 cut(s) 310
MwoI GCNNNNNNNGC 2 cut(s) 307, 762
NcoI CCATGG 3 cut(s) 259, 282, 1323
NdeI CATATG 1 cut(s) 970
NdeII GATC 5 cut(s) 22, 322, 414, 520, 1246
NlaIV GGNNCC 1 cut(s) 1248
NmuCI GTSAC 2 cut(s) 1025, 1288
NsbI TGCGCA 1 cut(s) 548
NspI RCATGY 2 cut(s) 734, 880
NspV TTCGAA 2 cut(s) 484, 581
PaeI GCATGC 1 cut(s) 880
PagI TCATGA 1 cut(s) 652
PciI ACATGT 1 cut(s) 730
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PctI GAATGC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 490
PfeI GAWTC 2 cut(s) 814, 1264
PkrI GCNGC 1 cut(s) 147
PleI GAGTC 3 cut(s) 73, 328, 1161
PpsI GAGTC 3 cut(s) 73, 328, 1161
PscI ACATGT 1 cut(s) 730
PsiI TTATAA 1 cut(s) 560
PspEI GGTNACC 1 cut(s) 1025
PspN4I GGNNCC 1 cut(s) 1248
PspPI GGNCC 1 cut(s) 248
PsuI RGATCY 1 cut(s) 1246
RsaI GTAC 5 cut(s) 226, 671, 735, 938, 1053
RsaNI GTAC 5 cut(s) 225, 670, 734, 937, 1052
RseI CAYNNNNRTG 1 cut(s) 651
SaqAI TTAA 3 cut(s) 177, 746, 836
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 5 cut(s) 22, 322, 414, 520, 1246
Sau96I GGNCC 1 cut(s) 248
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 3 cut(s) 73, 328, 1161
SduI GDGCHC 3 cut(s) 507, 812, 985
SfaNI GCATC 3 cut(s) 125, 534, 1095
SfuI TTCGAA 2 cut(s) 484, 581
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 2 cut(s) 745, 1090
SmoI CTYRAG 2 cut(s) 745, 1090
SphI GCATGC 1 cut(s) 880
SsiI CCGC 2 cut(s) 917, 1343
SspMI CTAG 2 cut(s) 165, 737
StyI CCWWGG 6 cut(s) 259, 282, 348, 593, 803, 1323
TaaI ACNGT 3 cut(s) 190, 978, 1203
TaqI TCGA 7 cut(s) 325, 484, 581, 882, 888, 1140, 1195
TatI WGTACW 3 cut(s) 669, 733, 1051
TfiI GAWTC 2 cut(s) 814, 1264
Tru1I TTAA 3 cut(s) 177, 746, 836
Tru9I TTAA 3 cut(s) 177, 746, 836
TscAI CASTG 1 cut(s) 983
TseFI GTSAC 2 cut(s) 1025, 1288
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 2 cut(s) 1025, 1288
TspDTI ATGAA 4 cut(s) 641, 987, 1273, 1294
TspGWI ACGGA 2 cut(s) 1086, 1160
TspRI CASTG 1 cut(s) 983
Vha464I CTTAAG 1 cut(s) 745
VneI GTGCAC 1 cut(s) 981
XapI RAATTY 2 cut(s) 912, 1056
XceI RCATGY 2 cut(s) 734, 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 1321
XmnI GAANNNNTTC 1 cut(s) 490
XspI CTAG 2 cut(s) 165, 737
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.