MD02G1081200.v1.1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000351
Physical Location & Seq
Reverse (-)
6374373 .. 6375095
723 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1081200.v1.1.491

Sequence Viewer

Length: 387 bp
ATGGTAGACAACAAAGTTAATGATCACTCCATCGTGGAGATTACGGATGAGGACAGAGATGTGATTGCACGAATCAATGGGAATTCGGAAACATCGCGTGAACATAAAAATCAAGTGGAATTGACAGTATCATCTCTTCGAGGAAAGCTTCACCGGCAGCCTCCATTCCCAGCTTGTAGCTGCATATTTCGAGTCCCTAAAGTACTACGCAGGCATAACGAAAAAGCTTTTGTTCCAAATTTGGTTTCAATAGGGCCTTTTCACCACGGAGATGAGAACTTGCGAGTGATGGAAGAAATCAAACGGTGGTACTTACATTGGCTACTTGAACGAAACCAACTCCGAAGACCAGCTTGGAGTGCTTTGTCGAGGCCATTAGAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

129

Amino Acids

14.99

Weight (kDa)

9.13

Isoelectric Point (pI)

66.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 62 - 113 1.1e-15 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 6
AccII CGCG 1 cut(s) 97
AcsI RAATTY 2 cut(s) 82, 238
AfaI GTAC 2 cut(s) 204, 311
AgsI TTSAA 2 cut(s) 249, 329
AjuI GAANNNNNNNTTGG 4 cut(s) 229, 261, 337, 369
AluBI AGCT 5 cut(s) 148, 173, 180, 227, 353
AluI AGCT 5 cut(s) 148, 173, 180, 227, 353
AoxI GGCC 2 cut(s) 254, 371
ApeKI GCWGC 2 cut(s) 157, 180
ApoI RAATTY 2 cut(s) 82, 238
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 143, 254
BarI GAAGNNNNNNTAC 2 cut(s) 120, 152
BbsI GAAGAC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 167, 169
BccI CCATC 2 cut(s) 38, 283
BclI TGATCA 1 cut(s) 22
BisI GCNGC 2 cut(s) 158, 181
BlsI GCNGC 2 cut(s) 159, 182
BmcAI AGTACT 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 265
Bse118I RCCGGY 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 52
BseXI GCAGC 2 cut(s) 167, 169
BseYI CCCAGC 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 256, 373
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 2 cut(s) 256, 373
Bsp143I GATC 1 cut(s) 22
BspANI GGCC 2 cut(s) 256, 373
BspFNI CGCG 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 153
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 127, 306
Bst6I CTCTTC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 154, 359
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 167, 169
BstV2I GAAGAC 1 cut(s) 352
BsuRI GGCC 2 cut(s) 256, 373
BtgI CCRYGG 1 cut(s) 265
BtgZI GCGATG 1 cut(s) 78
BtsCI GGATG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 203, 310
CviJI RGCY 9 cut(s) 148, 160, 173, 180, 227, 256, 322, 353, 373
CviKI_1 RGCY 9 cut(s) 148, 160, 173, 180, 227, 256, 322, 353, 373
CviQI GTAC 2 cut(s) 203, 310
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 82
FaiI YATR 4 cut(s) 105, 185, 216, 385
FalI AAGNNNNNCTT 2 cut(s) 337, 369
FaqI GGGAC 1 cut(s) 179
FbaI TGATCA 1 cut(s) 22
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 158, 181
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 158, 181
GluI GCNGC 2 cut(s) 158, 181
GsaI CCCAGC 1 cut(s) 173
HaeIII GGCC 2 cut(s) 256, 373
HapII CCGG 1 cut(s) 154
HindIII AAGCTT 2 cut(s) 146, 225
HinfI GANTC 2 cut(s) 72, 192
HpaII CCGG 1 cut(s) 154
HphI GGTGA 2 cut(s) 143, 254
Hpy166II GTNNAC 2 cut(s) 7, 101
Hpy188I TCNGA 2 cut(s) 88, 344
Hpy8I GTNNAC 2 cut(s) 7, 101
HpyCH4III ACNGT 2 cut(s) 127, 306
HpyCH4V TGCA 2 cut(s) 68, 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 359
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 167, 183, 196, 363
Lsp1109I GCAGC 2 cut(s) 167, 169
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 3 cut(s) 128, 305, 357
MluCI AATT 3 cut(s) 82, 119, 238
MlyI GAGTC 1 cut(s) 201
MnlI CCTC 5 cut(s) 43, 134, 171, 363, 373
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 1 cut(s) 154
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 154, 359
NdeII GATC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 159, 182
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 254
RsaI GTAC 2 cut(s) 204, 311
RsaNI GTAC 2 cut(s) 203, 310
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 2 cut(s) 158, 181
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 254
ScaI AGTACT 1 cut(s) 204
SchI GAGTC 1 cut(s) 201
SetI ASST 5 cut(s) 150, 175, 182, 229, 355
SmiMI CAYNNNNRTG 1 cut(s) 270
Sse9I AATT 3 cut(s) 82, 119, 238
TaaI ACNGT 2 cut(s) 127, 306
TaqI TCGA 3 cut(s) 139, 190, 368
TasI AATT 3 cut(s) 82, 119, 238
TatI WGTACW 1 cut(s) 202
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseI GCWGC 2 cut(s) 157, 180
TspGWI ACGGA 2 cut(s) 59, 282
XapI RAATTY 2 cut(s) 82, 238
XmiI GTMKAC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.