pycom17g24570

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000351
Physical Location & Seq
Forward (+)
22836809 .. 22837654
846 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g24570.1

Sequence Viewer

Length: 846 bp
ATGGAACAAGTTAAGCTATGGAATTTGCAATGCCTCCTCAAACGCAAACCGACTCCAGACACCAGTTTGGTGAAGTTTGTCAAGGAAATTAGAAGCAAAGAAGAGTTTCTTCGTAACTGCTATGACGAAAAGTTTGGTGATCATCTCAGTATCGATCAGTTTGTAGAAATGATGGTGGTCGATGGTTGCTTTATTTTAGAACTTATCCGCGGTAGGAATCCGATTTCCAGATATCATGATGTTTTCAGTATGCCAGAGATGTTGTCGATAGTTCAAAACGACTTGTTCCTGCTTGAAAACCAGCTTCCGTGGAAAGTTCTCGACTGTTTATTCAACCTCACAAAAGAATCAGGAGAGATTTCTCTACATAGATGTACTCCGGGCCTAATTTATGAAGTTACGAATAATTTAGACATCTTTGCTTACAATATTTTAGAAATTATGGATAATGAAAGGGAGACATGGCAATTCAGACATTTACTTGACAATACAAGAGATTTGCTTGTAGGATCATTATCGAGGAATAAGGACCCTTCTAATAGATTTTGGGATCCCATTCCCTCAGTGACACATCTTGAGGAGATTGGAGTCAAGTTTCAACTTGCATCCCTTGGGACAGAGCTGTTGGACATAACCTTCGACAGGGAAAATGGAGTGATGAAAATTCCCTATATGAAGATTGGAGCCCACACAGAATCTTTCTTCAATGAAGCTCCATTGCAGTTTGTCTTATGCCATGCTGCTGAATCAGCTTATCAAGTCTACCAAAGATTTAGACTCTCTCCTTCGGAAAGATATTGTAGTAACCGACCTGACCAAGGAGGACACTGTTTCTTTGTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

282

Amino Acids

32.91

Weight (kDa)

5.34

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 235 1.5e-47 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 762
AccII CGCG 1 cut(s) 210
AciI CCGC 2 cut(s) 208, 210
AclWI GGATC 3 cut(s) 517, 545, 558
AcsI RAATTY 2 cut(s) 22, 663
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 2 cut(s) 642, 818
AgsI TTSAA 6 cut(s) 275, 296, 334, 599, 706, 842
AluBI AGCT 5 cut(s) 16, 304, 622, 713, 752
AluI AGCT 5 cut(s) 16, 304, 622, 713, 752
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 3 cut(s) 517, 545, 558
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 2 cut(s) 22, 663
ArsI GACNNNNNNTTYG 4 cut(s) 116, 148, 620, 652
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 382, 529
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 2 cut(s) 82, 149
AvaII GGWCC 1 cut(s) 529
BamHI GGATCC 1 cut(s) 550
BanII GRGCYC 1 cut(s) 688
BbvI GCAGC 1 cut(s) 727
BccI CCATC 2 cut(s) 166, 176
BclI TGATCA 1 cut(s) 139
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 452
BisI GCNGC 1 cut(s) 741
BlsI GCNGC 1 cut(s) 742
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 529
BmgT120I GGNCC 2 cut(s) 382, 529
BmiI GGNNCC 3 cut(s) 531, 552, 685
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 614
BpmI CTGGAG 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 381
Bsa29I ATCGAT 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 514
BsaJI CCNNGG 4 cut(s) 208, 308, 610, 817
Bsc4I CCNNNNNNNGG 2 cut(s) 642, 818
Bse1I ACTGG 1 cut(s) 63
Bse3DI GCAATG 2 cut(s) 35, 716
Bse8I GATNNNNATC 1 cut(s) 514
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 4 cut(s) 208, 308, 610, 817
BseGI GGATG 1 cut(s) 605
BseJI GATNNNNATC 1 cut(s) 514
BseLI CCNNNNNNNGG 2 cut(s) 642, 818
BseMI GCAATG 2 cut(s) 35, 716
BseMII CTCAG 2 cut(s) 160, 576
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 2 cut(s) 26, 593
BseXI GCAGC 1 cut(s) 727
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 384
BshVI ATCGAT 1 cut(s) 153
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 2 cut(s) 642, 818
BsmAI GTCTC 1 cut(s) 452
BsmFI GGGAC 1 cut(s) 628
BsnI GGCC 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 688
Bsp143I GATC 4 cut(s) 139, 154, 509, 550
BspACI CCGC 2 cut(s) 208, 210
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 2 cut(s) 159, 575
BspDI ATCGAT 1 cut(s) 153
BspFNI CGCG 1 cut(s) 210
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 3 cut(s) 531, 552, 685
BspPI GGATC 3 cut(s) 517, 545, 558
BsrDI GCAATG 2 cut(s) 35, 716
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 4 cut(s) 208, 308, 610, 817
BssMI GATC 4 cut(s) 139, 154, 509, 550
BssT1I CCWWGG 2 cut(s) 610, 817
Bst4CI ACNGT 2 cut(s) 326, 830
Bst6I CTCTTC 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 146, 562
BstDSI CCRYGG 2 cut(s) 208, 308
BstENI CCTNNNNNAGG 2 cut(s) 640, 816
BstF5I GGATG 1 cut(s) 605
BstFNI CGCG 1 cut(s) 210
BstKTI GATC 4 cut(s) 142, 157, 512, 553
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 4 cut(s) 139, 154, 509, 550
BstMWI GCNNNNNNNGC 1 cut(s) 749
BstSCI CCNGG 1 cut(s) 379
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 727
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 1 cut(s) 384
BsuTUI ATCGAT 1 cut(s) 153
BtgI CCRYGG 2 cut(s) 208, 308
BtsCI GGATG 1 cut(s) 605
BtsIMutI CAGTG 2 cut(s) 570, 826
CciI TCATGA 1 cut(s) 235
Cfr13I GGNCC 2 cut(s) 382, 529
Cfr42I CCGCGG 1 cut(s) 211
ClaI ATCGAT 1 cut(s) 153
Csp6I GTAC 1 cut(s) 375
CviAII CATG 3 cut(s) 236, 462, 737
CviJI RGCY 7 cut(s) 16, 304, 384, 622, 686, 713, 752
CviKI_1 RGCY 7 cut(s) 16, 304, 384, 622, 686, 713, 752
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 2 cut(s) 146, 562
DpnI GATC 4 cut(s) 141, 156, 511, 552
DpnII GATC 4 cut(s) 139, 154, 509, 550
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 610, 817
Eco24I GRGCYC 1 cut(s) 688
Eco32I GATATC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 529
EcoNI CCTNNNNNAGG 2 cut(s) 640, 816
EcoO109I RGGNCCY 1 cut(s) 529
EcoRV GATATC 1 cut(s) 233
EcoT14I CCWWGG 2 cut(s) 610, 817
EcoT38I GRGCYC 1 cut(s) 688
ErhI CCWWGG 2 cut(s) 610, 817
FaeI CATG 3 cut(s) 239, 465, 740
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FaqI GGGAC 1 cut(s) 628
FatI CATG 3 cut(s) 235, 461, 736
FbaI TGATCA 1 cut(s) 139
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 1 cut(s) 741
FokI GGATG 1 cut(s) 592
FriOI GRGCYC 1 cut(s) 688
Fsp4HI GCNGC 1 cut(s) 741
GluI GCNGC 1 cut(s) 741
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 384
HapII CCGG 1 cut(s) 380
Hin1II CATG 3 cut(s) 239, 465, 740
HinfI GANTC 7 cut(s) 52, 217, 347, 588, 695, 746, 777
HpaII CCGG 1 cut(s) 380
HphI GGTGA 2 cut(s) 82, 149
Hpy166II GTNNAC 1 cut(s) 763
Hpy188I TCNGA 3 cut(s) 222, 473, 790
Hpy188III TCNNGA 6 cut(s) 56, 228, 236, 320, 351, 575
Hpy8I GTNNAC 1 cut(s) 763
HpyAV CCTTC 3 cut(s) 543, 646, 795
HpyCH4III ACNGT 2 cut(s) 326, 830
HpyCH4V TGCA 3 cut(s) 28, 605, 721
HpyF10VI GCNNNNNNNGC 1 cut(s) 749
HpyF3I CTNAG 2 cut(s) 146, 562
Hsp92II CATG 3 cut(s) 239, 465, 740
Ksp22I TGATCA 1 cut(s) 139
KspI CCGCGG 1 cut(s) 211
Kzo9I GATC 4 cut(s) 139, 154, 509, 550
LmnI GCTCC 2 cut(s) 683, 718
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 1 cut(s) 614
MaeIII GTNAC 4 cut(s) 113, 397, 565, 803
MalI GATC 4 cut(s) 141, 156, 511, 552
MboI GATC 4 cut(s) 139, 154, 509, 550
MboII GAAGA 4 cut(s) 101, 113, 688, 694
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 1 cut(s) 688
MluCI AATT 7 cut(s) 22, 87, 387, 406, 438, 467, 663
MlyI GAGTC 3 cut(s) 46, 597, 771
MmeI TCCRAC 1 cut(s) 606
MnlI CCTC 7 cut(s) 44, 47, 347, 513, 571, 571, 815
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 210
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 381
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 749
NciI CCSGG 1 cut(s) 381
NdeII GATC 4 cut(s) 139, 154, 509, 550
NlaIII CATG 3 cut(s) 239, 465, 740
NlaIV GGNNCC 3 cut(s) 531, 552, 685
NmuCI GTSAC 1 cut(s) 565
PagI TCATGA 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 4 cut(s) 217, 347, 695, 746
PkrI GCNGC 1 cut(s) 742
PleI GAGTC 3 cut(s) 46, 596, 771
PpsI GAGTC 3 cut(s) 46, 596, 771
PpuMI RGGWCCY 1 cut(s) 529
Psp5II RGGWCCY 1 cut(s) 529
PspN4I GGNNCC 3 cut(s) 531, 552, 685
PspPI GGNCC 2 cut(s) 382, 529
PspPPI RGGWCCY 1 cut(s) 529
PsuI RGATCY 1 cut(s) 550
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SacII CCGCGG 1 cut(s) 211
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 4 cut(s) 139, 154, 509, 550
Sau96I GGNCC 2 cut(s) 382, 529
SchI GAGTC 3 cut(s) 46, 597, 771
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 688
SetI ASST 8 cut(s) 18, 306, 339, 624, 638, 715, 754, 814
SfaNI GCATC 1 cut(s) 614
Sfr303I CCGCGG 1 cut(s) 211
SgrBI CCGCGG 1 cut(s) 211
SinI GGWCC 1 cut(s) 529
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 7 cut(s) 22, 87, 387, 406, 438, 467, 663
SsiI CCGC 2 cut(s) 208, 210
SspI AATATT 1 cut(s) 430
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 2 cut(s) 610, 817
TaaI ACNGT 2 cut(s) 326, 830
TaqI TCGA 6 cut(s) 153, 180, 266, 321, 518, 639
TasI AATT 7 cut(s) 22, 87, 387, 406, 438, 467, 663
TatI WGTACW 1 cut(s) 374
TfiI GAWTC 4 cut(s) 217, 347, 695, 746
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 570, 833
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 5 cut(s) 408, 465, 674, 689, 723
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 2 cut(s) 570, 833
VpaK11BI GGWCC 1 cut(s) 529
XagI CCTNNNNNAGG 2 cut(s) 640, 816
XapI RAATTY 2 cut(s) 22, 663
XmiI GTMKAC 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.