Rh7BG387600

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000351
Physical Location & Seq
Forward (+)
42209445 .. 42211357
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG387600.1

Sequence Viewer

Length: 1383 bp
ATGACAGAGAGTAATGTGAACGGTGAATGCTTGATCGAAATTAGAGACGGGGAAGAGAATGGGATTGCAACAAATAATGTGAATAGCCAAACTTTGAGTGAATATATTAGAAATGAAGATCAAGTCATAGCATACTCCATTCTAGGAAAACTTCGTCCGCAAGCTCCATCACCACCTAGTGCTTGCATATATAGAATCCCCGATCTACAACTACAAAAGAGGCTGCACGAAAAGGATTTTGTTCCTAGTTTAGTTTCAATTGGACCATTTCACCATGGAAAAAAGAACCTGCAAGCAATGGAAAGAATGAAACTATGGTACCTGCACAACCTCCTTATTCGAAAAGCCACTCCCGAGACCAACATGGAACACATTGTTGAAAAAATTAGGAGTATGGAGGAGTATTGTCGTGATTGCTATGACGAAAAAATTGATCTGAGTAGTGAAAAGTTTGTAGAGATGTTGGTAGTTGATGGTTTCTTTATTATTGAACTCTTCCGCAAAATGATAGGAGACATGCCCAGAGGCGTGGATGATCCTCTATTCAATAGGTTAGGGATGTTGTCGATAGTACAAAATGACTTGCTTCTACTAGAAAACCAACTGCCTTGGAGAGTTCTTGACTGCTTATTCCATCAAGTACCTGGTGGAAAATGCAAGTCCCTTTGGGAGCTTACTCAAAGGGTCCTTCCGAGTTGGACAGGTTTAGAATATTTTGTTTCTCATGTTCCAAATACATTGCAAAGCAGACATTTACTCGACACTCTTAGAATCCTTTCAGTTGAATTTGAATCGGACAAGAACAAGAAGGTTTGTCCATTTCGGGTGCGGATCCCCTCTGCGACAGAGCTTCTCCAAGTCGGAGTCAAATTTAGACGTAAAAGAGGTTTCGACAGCATACTCAACATAACCTTGCTCGATGGAGTGATGGAGATTGCACCAATAACTTTGGACGCCGAAAAATCTGTCTTCAGAAACCTCATAGCCTTGGAAGAGTATGAACCAAGGCACCATAAGTTTCAAATTACCTCTTATGCCAGGGTCATGCATGACCTTATTAAATCTAGCAAAGATGTGGAGTTTCTCATGCAAAAAGGCATTATTAACACCATTAGTCTGCGAAAGGAGGACATAGTCTATTTCTTCAACACCATTCTTGATGATAGTAATACAGTCTCCTCTTGTTCCTCTATCGTGTTACTTTCTGCCGGAGTGACTGAGTATTATGATCACCGTTGGCTACGAAGATGGATAGCGTCAATCAAGCGTGATTACTTGTACAATCCATCATCAATATGGTCAATCTCTAATGCAGTTGTGTTTATAACAATTTTGACCATCATACAAACCGTGTATTCAGTTCTCTCTTACTACAAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

460

Amino Acids

53.32

Weight (kDa)

6.65

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 63 - 442 1.6e-90 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1325
Acc36I ACCTGC 2 cut(s) 297, 330
Acc65I GGTACC 1 cut(s) 318
AccB1I GGYRCC 2 cut(s) 318, 1008
AciI CCGC 3 cut(s) 158, 499, 829
AclWI GGATC 3 cut(s) 530, 826, 839
AcsI RAATTY 2 cut(s) 785, 869
AcuI CTGAAG 1 cut(s) 955
AcyI GRCGYC 1 cut(s) 954
AdeI CACNNNGTG 1 cut(s) 179
AfaI GTAC 4 cut(s) 320, 573, 642, 1280
AgsI TTSAA 8 cut(s) 258, 380, 491, 547, 785, 791, 1022, 1147
AjnI CCWGG 2 cut(s) 643, 1037
AluBI AGCT 3 cut(s) 164, 673, 850
AluI AGCT 3 cut(s) 164, 673, 850
Alw26I GTCTC 4 cut(s) 39, 350, 507, 1180
AlwI GGATC 3 cut(s) 530, 826, 839
Ama87I CYCGRG 1 cut(s) 353
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 2 cut(s) 785, 869
ArsI GACNNNNNNTTYG 2 cut(s) 951, 983
Asp700I GAANNNNTTC 1 cut(s) 775
Asp718I GGTACC 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 263, 685
AsuHPI GGTGA 4 cut(s) 35, 162, 263, 1223
AsuII TTCGAA 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 2 cut(s) 263, 685
BaeI ACNNNNGTAYC 2 cut(s) 302, 335
BamHI GGATCC 1 cut(s) 831
BanI GGYRCC 2 cut(s) 318, 1008
BbsI GAAGAC 1 cut(s) 961
BbvI GCAGC 1 cut(s) 210
BccI CCATC 8 cut(s) 175, 467, 642, 914, 922, 1242, 1294, 1346
BciT130I CCWGG 2 cut(s) 645, 1039
BclI TGATCA 1 cut(s) 1228
BcoDI GTCTC 4 cut(s) 39, 350, 507, 1180
BfaI CTAG 5 cut(s) 143, 177, 246, 593, 1065
BfuAI ACCTGC 2 cut(s) 297, 330
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme1390I CCNGG 2 cut(s) 645, 1039
Bme18I GGWCC 2 cut(s) 263, 685
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 263, 685
BmiI GGNNCC 4 cut(s) 320, 686, 833, 1010
BmrFI CCNGG 2 cut(s) 645, 1039
BpiI GAAGAC 1 cut(s) 961
Bpu14I TTCGAA 1 cut(s) 340
BsaHI GRCGYC 1 cut(s) 954
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 5 cut(s) 274, 608, 987, 1004, 1038
Bse3DI GCAATG 2 cut(s) 303, 737
BseBI CCWGG 2 cut(s) 645, 1039
BseDI CCNNGG 5 cut(s) 274, 608, 987, 1004, 1038
BseGI GGATG 2 cut(s) 538, 564
BseMI GCAATG 2 cut(s) 303, 737
BseMII CTCAG 2 cut(s) 428, 1209
BseRI GAGGAG 2 cut(s) 413, 1168
BseXI GCAGC 1 cut(s) 210
BsgI GTGCAG 2 cut(s) 209, 308
BshNI GGYRCC 2 cut(s) 318, 1008
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 1 cut(s) 1209
BslFI GGGAC 1 cut(s) 646
BsmAI GTCTC 4 cut(s) 39, 350, 507, 1180
BsmBI CGTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 646
BsmI GAATGC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 340
Bsp1407I TGTACA 1 cut(s) 1278
Bsp143I GATC 7 cut(s) 33, 118, 202, 433, 535, 831, 1228
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 3 cut(s) 158, 499, 829
BspCNI CTCAG 2 cut(s) 429, 1210
BspLI GGNNCC 4 cut(s) 320, 686, 833, 1010
BspMI ACCTGC 2 cut(s) 297, 330
BspPI GGATC 3 cut(s) 530, 826, 839
BspT104I TTCGAA 1 cut(s) 340
BspT107I GGYRCC 2 cut(s) 318, 1008
BspTNI GGTCTC 1 cut(s) 350
BsrDI GCAATG 2 cut(s) 303, 737
BsrGI TGTACA 1 cut(s) 1278
BssECI CCNNGG 5 cut(s) 274, 608, 987, 1004, 1038
BssMI GATC 7 cut(s) 33, 118, 202, 433, 535, 831, 1228
BssNI GRCGYC 1 cut(s) 954
BssT1I CCWWGG 4 cut(s) 274, 608, 987, 1004
Bst2UI CCWGG 2 cut(s) 645, 1039
Bst4CI ACNGT 4 cut(s) 23, 1174, 1235, 1351
Bst6I CTCTTC 3 cut(s) 48, 500, 987
BstACI GRCGYC 1 cut(s) 954
BstAUI TGTACA 1 cut(s) 1278
BstBI TTCGAA 1 cut(s) 340
BstC8I GCNNGC 3 cut(s) 162, 184, 294
BstDEI CTNAG 3 cut(s) 437, 767, 1218
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 2 cut(s) 538, 564
BstKTI GATC 7 cut(s) 36, 121, 205, 436, 538, 834, 1231
BstMAI GTCTC 4 cut(s) 39, 350, 507, 1180
BstMBI GATC 7 cut(s) 33, 118, 202, 433, 535, 831, 1228
BstNI CCWGG 2 cut(s) 645, 1039
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 2 cut(s) 643, 1037
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 961
BstX2I RGATCY 1 cut(s) 831
BstXI CCANNNNNNTGG 1 cut(s) 529
BstYI RGATCY 1 cut(s) 831
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 2 cut(s) 538, 564
BveI ACCTGC 2 cut(s) 297, 330
Cac8I GCNNGC 3 cut(s) 162, 184, 294
Cfr13I GGNCC 2 cut(s) 263, 685
CseI GACGC 2 cut(s) 962, 1245
CsiI ACCWGGT 1 cut(s) 643
Csp6I GTAC 4 cut(s) 319, 572, 641, 1279
CviAII CATG 7 cut(s) 275, 364, 517, 725, 1045, 1049, 1087
CviJI RGCY 8 cut(s) 87, 164, 223, 347, 673, 850, 986, 1240
CviKI_1 RGCY 8 cut(s) 87, 164, 223, 347, 673, 850, 986, 1240
CviQI GTAC 4 cut(s) 319, 572, 641, 1279
DdeI CTNAG 3 cut(s) 437, 767, 1218
DpnI GATC 7 cut(s) 35, 120, 204, 435, 537, 833, 1230
DpnII GATC 7 cut(s) 33, 118, 202, 433, 535, 831, 1228
DraIII CACNNNGTG 1 cut(s) 179
Eam1104I CTCTTC 3 cut(s) 48, 500, 987
EarI CTCTTC 3 cut(s) 48, 500, 987
Eco130I CCWWGG 4 cut(s) 274, 608, 987, 1004
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 263, 685
Eco57I CTGAAG 1 cut(s) 955
Eco88I CYCGRG 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 685
EcoRII CCWGG 2 cut(s) 643, 1037
EcoT14I CCWWGG 4 cut(s) 274, 608, 987, 1004
EcoT22I ATGCAT 1 cut(s) 1050
ErhI CCWWGG 4 cut(s) 274, 608, 987, 1004
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 7 cut(s) 278, 367, 520, 728, 1048, 1052, 1090
FaqI GGGAC 1 cut(s) 646
FatI CATG 7 cut(s) 274, 363, 516, 724, 1044, 1048, 1086
FbaI TGATCA 1 cut(s) 1228
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 2 cut(s) 545, 571
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 5 cut(s) 143, 177, 246, 593, 1065
GluI GCNGC 1 cut(s) 224
HapII CCGG 1 cut(s) 1209
HgaI GACGC 2 cut(s) 962, 1245
Hin1I GRCGYC 1 cut(s) 954
Hin1II CATG 7 cut(s) 278, 367, 520, 728, 1048, 1052, 1090
HinfI GANTC 4 cut(s) 195, 771, 791, 864
HpaII CCGG 1 cut(s) 1209
HphI GGTGA 4 cut(s) 35, 162, 263, 1223
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 5 cut(s) 438, 693, 796, 863, 974
Hpy188III TCNNGA 4 cut(s) 353, 410, 620, 1157
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 698, 802
HpyCH4III ACNGT 4 cut(s) 23, 1174, 1235, 1351
HpyCH4IV ACGT 1 cut(s) 877
HpyF3I CTNAG 3 cut(s) 437, 767, 1218
HpySE526I ACGT 1 cut(s) 877
Hsp92I GRCGYC 1 cut(s) 954
Hsp92II CATG 7 cut(s) 278, 367, 520, 728, 1048, 1052, 1090
KpnI GGTACC 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 1228
Kzo9I GATC 7 cut(s) 33, 118, 202, 433, 535, 831, 1228
LmnI GCTCC 2 cut(s) 169, 670
LpnPI CCDG 9 cut(s) 302, 335, 535, 630, 657, 687, 1024, 1051, 1222
Lsp1109I GCAGC 1 cut(s) 210
MabI ACCWGGT 1 cut(s) 643
MaeI CTAG 5 cut(s) 143, 177, 246, 593, 1065
MaeII ACGT 1 cut(s) 877
MaeIII GTNAC 2 cut(s) 1197, 1213
MalI GATC 7 cut(s) 35, 120, 204, 435, 537, 833, 1230
MboI GATC 7 cut(s) 33, 118, 202, 433, 535, 831, 1228
MboII GAAGA 7 cut(s) 65, 128, 487, 961, 1004, 1135, 1257
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 1 cut(s) 831
MluCI AATT 8 cut(s) 39, 258, 384, 429, 785, 869, 1023, 1329
MlyI GAGTC 1 cut(s) 873
MmeI TCCRAC 2 cut(s) 677, 841
Mph1103I ATGCAT 1 cut(s) 1050
MroXI GAANNNNTTC 1 cut(s) 775
MseI TTAA 2 cut(s) 1059, 1104
MslI CAYNNNNRTG 1 cut(s) 1294
MspI CCGG 1 cut(s) 1209
MspR9I CCNGG 2 cut(s) 645, 1039
MunI CAATTG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 2 cut(s) 645, 1039
NcoI CCATGG 1 cut(s) 274
NdeII GATC 7 cut(s) 33, 118, 202, 433, 535, 831, 1228
NlaIII CATG 7 cut(s) 278, 367, 520, 728, 1048, 1052, 1090
NlaIV GGNNCC 4 cut(s) 320, 686, 833, 1010
NmuCI GTSAC 1 cut(s) 1213
NsiI ATGCAT 1 cut(s) 1050
NspI RCATGY 1 cut(s) 520
NspV TTCGAA 1 cut(s) 340
PctI GAATGC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 775
PfeI GAWTC 3 cut(s) 195, 771, 791
PflFI GACNNNGTC 1 cut(s) 1133
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 1 cut(s) 872
PpsI GAGTC 1 cut(s) 872
PpuMI RGGWCCY 1 cut(s) 685
PsiI TTATAA 1 cut(s) 1325
Psp5II RGGWCCY 1 cut(s) 685
Psp6I CCWGG 2 cut(s) 643, 1037
PspGI CCWGG 2 cut(s) 643, 1037
PspN4I GGNNCC 4 cut(s) 320, 686, 833, 1010
PspPI GGNCC 2 cut(s) 263, 685
PspPPI RGGWCCY 1 cut(s) 685
PsuI RGATCY 1 cut(s) 831
PsyI GACNNNGTC 1 cut(s) 1133
RsaI GTAC 4 cut(s) 320, 573, 642, 1280
RsaNI GTAC 4 cut(s) 319, 572, 641, 1279
RseI CAYNNNNRTG 1 cut(s) 1294
SaqAI TTAA 2 cut(s) 1059, 1104
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 7 cut(s) 33, 118, 202, 433, 535, 831, 1228
Sau96I GGNCC 2 cut(s) 263, 685
SchI GAGTC 1 cut(s) 873
ScrFI CCNGG 2 cut(s) 645, 1039
SexAI ACCWGGT 1 cut(s) 643
SfuI TTCGAA 1 cut(s) 340
SinI GGWCC 2 cut(s) 263, 685
SmiMI CAYNNNNRTG 1 cut(s) 1294
Sse9I AATT 8 cut(s) 39, 258, 384, 429, 785, 869, 1023, 1329
SsiI CCGC 3 cut(s) 158, 499, 829
SspI AATATT 1 cut(s) 713
SspMI CTAG 5 cut(s) 143, 177, 246, 593, 1065
StyD4I CCNGG 2 cut(s) 643, 1037
StyI CCWWGG 4 cut(s) 274, 608, 987, 1004
TaaI ACNGT 4 cut(s) 23, 1174, 1235, 1351
TaiI ACGT 1 cut(s) 880
TaqI TCGA 6 cut(s) 36, 340, 566, 759, 891, 918
TasI AATT 8 cut(s) 39, 258, 384, 429, 785, 869, 1023, 1329
TatI WGTACW 2 cut(s) 571, 1278
TfiI GAWTC 3 cut(s) 195, 771, 791
Tru1I TTAA 2 cut(s) 1059, 1104
Tru9I TTAA 2 cut(s) 1059, 1104
TseFI GTSAC 1 cut(s) 1213
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 1213
TspDTI ATGAA 3 cut(s) 129, 323, 1014
Tth111I GACNNNGTC 1 cut(s) 1133
VpaK11BI GGWCC 2 cut(s) 263, 685
XapI RAATTY 2 cut(s) 785, 869
XceI RCATGY 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 2 cut(s) 641, 1293
XmnI GAANNNNTTC 1 cut(s) 775
XspI CTAG 5 cut(s) 143, 177, 246, 593, 1065
Zsp2I ATGCAT 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.