RLG00000021394

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000351
Physical Location & Seq
Forward (+)
74813850 .. 74815275
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021394

Sequence Viewer

Length: 732 bp
ATGGATAACGACCACCCCCGGATTGAAATTAAAGAAGATGAAGGGAATTTGATGGTAGCAAATAATGTGGAGCGGCAAATTATGAGTGAAAATAGAAATGATGAAGATGAATTATGCGCATTATCGATTCCAGGAAAGTTTTTAGAACCACCTCCATCACCACCTTGCATGTTGAAAATTCCCAAGATACTTCAGGGTCCTAATGAAGCTGAGTTGGACAGCAAGATTCTTCAGAATGACCCTCTGTCCCAAAGTTCATGGATGCGCACCCCACTTCTATCAGATTTGTTACTACTCGAAAACCAGCTGCCTTGGTTAGTTCTTGGTTGTTTATTCCAATATCTCGTAAAAGAAAATGCTGACGATGAACCTGTTGAAAAGCATAAGTTTCTATCTGAGCTTATTCTCAAATTTAGTCAGTTGCACACCCTGCGCTTTCTAATGCCGAATGATGGAGCATCCGAAATCGGGCATTTACTTGACCACATAAGAATCGGTATAGTTGGACCAGGAAAGCTAACTATCAGTTCACGTCGTTATTTGGTTCCCTCTGTGACAGAACTCCGGCAAATTGGAGTCATATTTAAACGTGGAGAGATGTGTTGCCACACACTCAACATAGCCTTCCACAATGGAGTGATATGGAGATTCCGGAAATATGTATTGGCAATAATCGATCTCTCTTTATCAACCTCATTGCTTCAAAGAATTAATGCCAGCAAGGCCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

244

Amino Acids

27.6

Weight (kDa)

5.82

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 77 - 214 2.4e-18 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 118, 266
AccBSI CCGCTC 1 cut(s) 73
AccIII TCCGGA 1 cut(s) 651
AciI CCGC 1 cut(s) 73
AcsI RAATTY 3 cut(s) 46, 177, 410
AcuI CTGAAG 2 cut(s) 176, 215
AfiI CCNNNNNNNGG 2 cut(s) 452, 468
AgsI TTSAA 4 cut(s) 26, 175, 377, 704
AhdI GACNNNNNGTC 1 cut(s) 244
AjiI CACGTC 1 cut(s) 533
AjnI CCWGG 2 cut(s) 130, 508
AjuI GAANNNNNNNTTGG 2 cut(s) 647, 679
AluBI AGCT 4 cut(s) 209, 307, 400, 517
AluI AGCT 4 cut(s) 209, 307, 400, 517
Aor13HI TCCGGA 1 cut(s) 651
AoxI GGCC 1 cut(s) 723
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 3 cut(s) 46, 177, 410
AseI ATTAAT 1 cut(s) 711
AspLEI GCGC 3 cut(s) 119, 267, 435
AspS9I GGNCC 2 cut(s) 197, 506
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 150
AvaII GGWCC 2 cut(s) 197, 506
BbvI GCAGC 1 cut(s) 294
BccI CCATC 3 cut(s) 46, 163, 446
BciT130I CCWGG 2 cut(s) 132, 510
BcnI CCSGG 1 cut(s) 19
BglI GCCNNNNNGGC 1 cut(s) 722
BisI GCNGC 2 cut(s) 74, 308
BlsI GCNGC 2 cut(s) 75, 309
Bme1390I CCNGG 3 cut(s) 19, 132, 510
Bme18I GGWCC 2 cut(s) 197, 506
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 533
BmgT120I GGNCC 2 cut(s) 197, 506
BmiI GGNNCC 2 cut(s) 198, 546
BmrFI CCNGG 3 cut(s) 19, 132, 510
BmsI GCATC 2 cut(s) 252, 467
BpuMI CCSGG 1 cut(s) 19
Bsa29I ATCGAT 2 cut(s) 125, 675
BsaJI CCNNGG 2 cut(s) 17, 311
BsaWI WCCGGW 1 cut(s) 651
Bsc4I CCNNNNNNNGG 2 cut(s) 452, 468
Bse3DI GCAATG 1 cut(s) 695
BseAI TCCGGA 1 cut(s) 651
BseBI CCWGG 2 cut(s) 132, 510
BseCI ATCGAT 2 cut(s) 125, 675
BseDI CCNNGG 2 cut(s) 17, 311
BseGI GGATG 2 cut(s) 267, 458
BseLI CCNNNNNNNGG 2 cut(s) 452, 468
BseMI GCAATG 1 cut(s) 695
BseMII CTCAG 2 cut(s) 201, 387
BseXI GCAGC 1 cut(s) 294
BshFI GGCC 1 cut(s) 725
BshVI ATCGAT 2 cut(s) 125, 675
BsiSI CCGG 3 cut(s) 19, 565, 652
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 2 cut(s) 452, 468
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 1 cut(s) 725
Bsp13I TCCGGA 1 cut(s) 651
Bsp143I GATC 1 cut(s) 676
BspACI CCGC 1 cut(s) 73
BspANI GGCC 1 cut(s) 725
BspCNI CTCAG 2 cut(s) 202, 388
BspDI ATCGAT 2 cut(s) 125, 675
BspEI TCCGGA 1 cut(s) 651
BspLI GGNNCC 2 cut(s) 198, 546
BsrBI CCGCTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 695
BssECI CCNNGG 2 cut(s) 17, 311
BssMI GATC 1 cut(s) 676
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 2 cut(s) 132, 510
BstAPI GCANNNNNTGC 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 718
BstDEI CTNAG 2 cut(s) 210, 396
BstF5I GGATG 2 cut(s) 267, 458
BstHHI GCGC 3 cut(s) 119, 267, 435
BstKTI GATC 1 cut(s) 679
BstMBI GATC 1 cut(s) 676
BstMWI GCNNNNNNNGC 2 cut(s) 430, 722
BstNI CCWGG 2 cut(s) 132, 510
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 3 cut(s) 17, 130, 508
BstV1I GCAGC 1 cut(s) 294
Bsu15I ATCGAT 2 cut(s) 125, 675
BsuRI GGCC 1 cut(s) 725
BsuTUI ATCGAT 2 cut(s) 125, 675
BtrI CACGTC 1 cut(s) 533
BtsCI GGATG 2 cut(s) 267, 458
Cac8I GCNNGC 1 cut(s) 718
CfoI GCGC 3 cut(s) 119, 267, 435
Cfr13I GGNCC 2 cut(s) 197, 506
ClaI ATCGAT 2 cut(s) 125, 675
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 2 cut(s) 169, 258
CviJI RGCY 6 cut(s) 209, 307, 400, 517, 623, 725
CviKI_1 RGCY 6 cut(s) 209, 307, 400, 517, 623, 725
DdeI CTNAG 2 cut(s) 210, 396
DpnI GATC 1 cut(s) 678
DpnII GATC 1 cut(s) 676
DraI TTTAAA 1 cut(s) 586
DriI GACNNNNNGTC 1 cut(s) 244
Eam1105I GACNNNNNGTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 197, 506
Eco57I CTGAAG 2 cut(s) 176, 215
EcoO109I RGGNCCY 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 130, 508
EcoT14I CCWWGG 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 2 cut(s) 172, 261
FaqI GGGAC 1 cut(s) 232
FatI CATG 2 cut(s) 168, 257
Fnu4HI GCNGC 2 cut(s) 74, 308
FokI GGATG 2 cut(s) 274, 445
Fsp4HI GCNGC 2 cut(s) 74, 308
FspAI RTGCGCAY 2 cut(s) 118, 266
FspI TGCGCA 2 cut(s) 118, 266
GlaI GCGC 3 cut(s) 118, 266, 434
GluI GCNGC 2 cut(s) 74, 308
HaeIII GGCC 1 cut(s) 725
HapII CCGG 3 cut(s) 19, 565, 652
HhaI GCGC 3 cut(s) 119, 267, 435
Hin1II CATG 2 cut(s) 172, 261
Hin6I GCGC 3 cut(s) 117, 265, 433
HinP1I GCGC 3 cut(s) 117, 265, 433
HinfI GANTC 5 cut(s) 127, 226, 492, 576, 648
HpaII CCGG 3 cut(s) 19, 565, 652
HphI GGTGA 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 530
Hpy188I TCNGA 4 cut(s) 234, 283, 397, 463
Hpy188III TCNNGA 1 cut(s) 652
Hpy8I GTNNAC 1 cut(s) 530
Hpy99I CGWCG 1 cut(s) 537
HpyAV CCTTC 2 cut(s) 35, 634
HpyCH4IV ACGT 2 cut(s) 532, 589
HpyCH4V TGCA 2 cut(s) 168, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 430, 722
HpyF3I CTNAG 2 cut(s) 210, 396
HpySE526I ACGT 2 cut(s) 532, 589
Hsp92II CATG 2 cut(s) 172, 261
HspAI GCGC 3 cut(s) 117, 265, 433
Kpn2I TCCGGA 1 cut(s) 651
Kzo9I GATC 1 cut(s) 676
LmnI GCTCC 2 cut(s) 70, 455
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 2 cut(s) 252, 467
MaeII ACGT 2 cut(s) 532, 589
MaeIII GTNAC 2 cut(s) 288, 553
MalI GATC 1 cut(s) 678
MbiI CCGCTC 1 cut(s) 73
MboI GATC 1 cut(s) 676
MboII GAAGA 3 cut(s) 47, 116, 221
MluCI AATT 8 cut(s) 27, 46, 78, 110, 177, 410, 570, 708
MlyI GAGTC 1 cut(s) 585
MmeI TCCRAC 2 cut(s) 195, 484
MnlI CCTC 4 cut(s) 162, 252, 559, 703
MroI TCCGGA 1 cut(s) 651
MseI TTAA 3 cut(s) 30, 585, 711
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 3 cut(s) 19, 565, 652
MspR9I CCNGG 3 cut(s) 19, 132, 510
MvaI CCWGG 2 cut(s) 132, 510
MwoI GCNNNNNNNGC 2 cut(s) 430, 722
NciI CCSGG 1 cut(s) 19
NdeII GATC 1 cut(s) 676
NlaIII CATG 2 cut(s) 172, 261
NlaIV GGNNCC 2 cut(s) 198, 546
NmuCI GTSAC 1 cut(s) 553
NsbI TGCGCA 2 cut(s) 118, 266
NspI RCATGY 1 cut(s) 172
PfeI GAWTC 4 cut(s) 127, 226, 492, 648
PfoI TCCNGGA 1 cut(s) 130
PkrI GCNGC 2 cut(s) 75, 309
PleI GAGTC 1 cut(s) 584
PpsI GAGTC 1 cut(s) 584
PpuMI RGGWCCY 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 711
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 130, 508
PspGI CCWGG 2 cut(s) 130, 508
PspN4I GGNNCC 2 cut(s) 198, 546
PspPI GGNCC 2 cut(s) 197, 506
PspPPI RGGWCCY 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 307
SaqAI TTAA 3 cut(s) 30, 585, 711
SatI GCNGC 2 cut(s) 74, 308
Sau3AI GATC 1 cut(s) 676
Sau96I GGNCC 2 cut(s) 197, 506
SchI GAGTC 1 cut(s) 585
ScrFI CCNGG 3 cut(s) 19, 132, 510
SfaNI GCATC 2 cut(s) 252, 467
SinI GGWCC 2 cut(s) 197, 506
Sse9I AATT 8 cut(s) 27, 46, 78, 110, 177, 410, 570, 708
SsiI CCGC 1 cut(s) 73
StyD4I CCNGG 3 cut(s) 17, 130, 508
StyI CCWWGG 1 cut(s) 311
TaiI ACGT 2 cut(s) 535, 592
TaqI TCGA 3 cut(s) 125, 297, 675
TasI AATT 8 cut(s) 27, 46, 78, 110, 177, 410, 570, 708
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 4 cut(s) 127, 226, 492, 648
Tru1I TTAA 3 cut(s) 30, 585, 711
Tru9I TTAA 3 cut(s) 30, 585, 711
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 6 cut(s) 54, 117, 123, 219, 246, 381
VpaK11BI GGWCC 2 cut(s) 197, 506
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 3 cut(s) 46, 177, 410
XceI RCATGY 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.