Prupe.3G155700_v2.0.a1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000351
Physical Location & Seq
Forward (+)
17392854 .. 17394026
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G155700.1

Sequence Viewer

Length: 906 bp
GAATCTCCATTAGCAGATCAAACTTGCATATATAGAGTCCCTCATAAACTGTTTAGGCACAACGAAGAGGCTTTCGTCCCAAGTTTGGTTTCAATCGGGCCGTATCATCATGGAGAAAAGAAGTTGCAGGCCATGGAAGAAATGAAGCTATGGTACTTGCATTGCCTCATTGAACGAAAACCAAATCAGAACACCAGTTTGGAGAAGTTTGTGACAGAAATTAGAAGTATGGAACAATTTTGTCGTGATTGCTACGAAGAAAAGTTTGATCATATGAGCAGTAATATATTTGTAGAAATGATGGTGGTTGATGGTTGCTTTATTATTGAACTTTTCCGCAAAAACCTTTTGAGGTTCTGGGACCACGCGCTTTTGGAAATCGGAGTGGATTTTGAATGTCGTATAGAAATCATGAAACCTGATCTGCTTGACATTACCTTAGAAAATGGGGTGATGAGAATCCCTTCATTGTCAATTGGAGAGAATGGAGAATGTTTCTTAAGAAACCTCATAGCCTATGAACAGTGTGCACCAAAGCACGCAAAATGTTACGCTACCTCTTATGCAAAGTTGTTCAGTTGCCTTATTAAGTCTACCAAAGATGCGGAATTTCTGATGGAGAAAGGAATTATACAAACGCAGTTGAGCAAGGAGGACATAGCCTGTTTCTTCACTAGGGTTTGCAAGGACATTGAAATTGAAGGCGACTTTCTCTACTTCGGTGACCTCGCCTCTTCTGTGGGAAAGTATTGTAAGCGTCGCTGGCTAAGGAGTTGGCTCACAATGATCAAACGAGATTATTTATACAATCCATCATCAATCTGGTCTGTTTCCAGTGGGGTCGGCGTTATTCTCATTCTTACCATCACACAGACAATTTATACTGTTCTCTCCTACTACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

302

Amino Acids

35.18

Weight (kDa)

6.12

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 593
AccII CGCG 1 cut(s) 368
AciI CCGC 2 cut(s) 337, 605
AcsI RAATTY 1 cut(s) 608
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 85
AflII CTTAAG 1 cut(s) 499
AgsI TTSAA 6 cut(s) 93, 173, 329, 395, 695, 701
AjuI GAANNNNNNNTTGG 4 cut(s) 73, 105, 182, 214
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw21I GWGCWC 1 cut(s) 532
Alw44I GTGCAC 1 cut(s) 528
AoxI GGCC 2 cut(s) 98, 129
ApaLI GTGCAC 1 cut(s) 528
ApoI RAATTY 1 cut(s) 608
Asp700I GAANNNNTTC 1 cut(s) 463
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 2 cut(s) 98, 361
AsuHPI GGTGA 2 cut(s) 463, 734
AvaII GGWCC 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 532
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
Bbv12I GWGCWC 1 cut(s) 532
BccI CCATC 5 cut(s) 295, 305, 610, 820, 872
BceAI ACGGC 1 cut(s) 85
BclI TGATCA 2 cut(s) 268, 786
BfaI CTAG 1 cut(s) 675
BfrI CTTAAG 1 cut(s) 499
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 98, 361
BmiI GGNNCC 1 cut(s) 362
BmsI GCATC 1 cut(s) 592
Bpu10I CCTNAGC 1 cut(s) 767
BsaBI GATNNNNATC 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 2 cut(s) 195, 834
Bse3DI GCAATG 1 cut(s) 160
Bse8I GATNNNNATC 1 cut(s) 458
BseDI CCNNGG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 458
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 160
BseNI ACTGG 2 cut(s) 195, 834
BseSI GKGCMC 1 cut(s) 532
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 2 cut(s) 100, 131
BsiHKAI GWGCWC 1 cut(s) 532
BslFI GGGAC 3 cut(s) 23, 62, 374
BslI CCNNNNNNNGG 1 cut(s) 85
BsmFI GGGAC 3 cut(s) 23, 62, 374
BsnI GGCC 2 cut(s) 100, 131
Bsp1286I GDGCHC 1 cut(s) 532
Bsp143I GATC 4 cut(s) 16, 268, 421, 786
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 2 cut(s) 337, 605
BspANI GGCC 2 cut(s) 100, 131
BspFNI CGCG 1 cut(s) 368
BspHI TCATGA 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 362
BspTI CTTAAG 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 2 cut(s) 195, 834
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 4 cut(s) 16, 268, 421, 786
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 3 cut(s) 51, 525, 886
Bst6I CTCTTC 2 cut(s) 60, 739
BstAFI CTTAAG 1 cut(s) 499
BstC8I GCNNGC 3 cut(s) 129, 540, 764
BstDEI CTNAG 2 cut(s) 439, 767
BstDSI CCRYGG 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 722
BstFNI CGCG 1 cut(s) 368
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 4 cut(s) 19, 271, 424, 789
BstMBI GATC 4 cut(s) 16, 268, 421, 786
BstMWI GCNNNNNNNGC 1 cut(s) 763
BstPI GGTNACC 1 cut(s) 722
BstSLI GKGCMC 1 cut(s) 532
BstUI CGCG 1 cut(s) 368
BsuRI GGCC 2 cut(s) 100, 131
BtgI CCRYGG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 530, 841
Cac8I GCNNGC 3 cut(s) 129, 540, 764
CciI TCATGA 1 cut(s) 411
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 98, 361
CseI GACGC 1 cut(s) 746
Csp6I GTAC 1 cut(s) 154
CviAII CATG 3 cut(s) 110, 133, 412
CviJI RGCY 8 cut(s) 71, 100, 131, 148, 515, 662, 766, 778
CviKI_1 RGCY 8 cut(s) 71, 100, 131, 148, 515, 662, 766, 778
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 439, 767
DpnI GATC 4 cut(s) 18, 270, 423, 788
DpnII GATC 4 cut(s) 16, 268, 421, 786
Eam1104I CTCTTC 2 cut(s) 60, 739
EarI CTCTTC 2 cut(s) 60, 739
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 361
Eco91I GGTNACC 1 cut(s) 722
EcoO65I GGTNACC 1 cut(s) 722
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 3 cut(s) 113, 136, 415
FaqI GGGAC 3 cut(s) 23, 62, 374
FatI CATG 3 cut(s) 109, 132, 411
FauNDI CATATG 1 cut(s) 273
FbaI TGATCA 2 cut(s) 268, 786
FblI GTMKAC 1 cut(s) 593
FspBI CTAG 1 cut(s) 675
GlaI GCGC 1 cut(s) 369
HaeIII GGCC 2 cut(s) 100, 131
HgaI GACGC 1 cut(s) 746
HhaI GCGC 1 cut(s) 370
Hin1II CATG 3 cut(s) 113, 136, 415
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HinfI GANTC 3 cut(s) 2, 36, 459
HphI GGTGA 2 cut(s) 463, 734
Hpy166II GTNNAC 2 cut(s) 530, 594
Hpy188I TCNGA 3 cut(s) 189, 383, 615
Hpy188III TCNNGA 2 cut(s) 245, 412
Hpy8I GTNNAC 2 cut(s) 530, 594
Hpy99I CGWCG 1 cut(s) 762
HpyAV CCTTC 2 cut(s) 474, 695
HpyCH4III ACNGT 3 cut(s) 51, 525, 886
HpyCH4V TGCA 6 cut(s) 27, 127, 160, 530, 566, 684
HpyF10VI GCNNNNNNNGC 1 cut(s) 763
HpyF3I CTNAG 2 cut(s) 439, 767
Hsp92II CATG 3 cut(s) 113, 136, 415
HspAI GCGC 1 cut(s) 368
Ksp22I TGATCA 2 cut(s) 268, 786
Kzo9I GATC 4 cut(s) 16, 268, 421, 786
LpnPI CCDG 8 cut(s) 113, 208, 343, 432, 676, 748, 808, 847
LweI GCATC 1 cut(s) 592
MaeI CTAG 1 cut(s) 675
MaeIII GTNAC 3 cut(s) 211, 548, 722
MalI GATC 4 cut(s) 18, 270, 423, 788
MboI GATC 4 cut(s) 16, 268, 421, 786
MboII GAAGA 5 cut(s) 77, 149, 269, 661, 726
MfeI CAATTG 1 cut(s) 474
MhlI GDGCHC 1 cut(s) 532
MluCI AATT 7 cut(s) 219, 236, 474, 608, 627, 696, 876
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 9 cut(s) 51, 61, 176, 345, 518, 568, 646, 737, 742
MroXI GAANNNNTTC 1 cut(s) 463
MseI TTAA 2 cut(s) 500, 588
MspCI CTTAAG 1 cut(s) 499
MunI CAATTG 1 cut(s) 474
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 763
NcoI CCATGG 1 cut(s) 132
NdeI CATATG 1 cut(s) 273
NdeII GATC 4 cut(s) 16, 268, 421, 786
NlaIII CATG 3 cut(s) 113, 136, 415
NlaIV GGNNCC 1 cut(s) 362
NmuCI GTSAC 2 cut(s) 211, 722
PagI TCATGA 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 2, 459
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PspEI GGTNACC 1 cut(s) 722
PspN4I GGNNCC 1 cut(s) 362
PspPI GGNCC 2 cut(s) 98, 361
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 2 cut(s) 500, 588
Sau3AI GATC 4 cut(s) 16, 268, 421, 786
Sau96I GGNCC 2 cut(s) 98, 361
SchI GAGTC 1 cut(s) 45
SduI GDGCHC 1 cut(s) 532
SetI ASST 8 cut(s) 150, 348, 356, 421, 440, 510, 560, 729
SfaNI GCATC 1 cut(s) 592
SinI GGWCC 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
Sse9I AATT 7 cut(s) 219, 236, 474, 608, 627, 696, 876
SsiI CCGC 2 cut(s) 337, 605
SspMI CTAG 1 cut(s) 675
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 3 cut(s) 51, 525, 886
TasI AATT 7 cut(s) 219, 236, 474, 608, 627, 696, 876
TfiI GAWTC 2 cut(s) 2, 459
Tru1I TTAA 2 cut(s) 500, 588
Tru9I TTAA 2 cut(s) 500, 588
TscAI CASTG 2 cut(s) 530, 841
TseFI GTSAC 2 cut(s) 211, 722
Tsp45I GTSAC 2 cut(s) 211, 722
TspDTI ATGAA 4 cut(s) 158, 428, 456, 534
TspRI CASTG 2 cut(s) 530, 841
Vha464I CTTAAG 1 cut(s) 499
VneI GTGCAC 1 cut(s) 528
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 819
XmiI GTMKAC 1 cut(s) 593
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.