MD02G1081100.v1.1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000351
Physical Location & Seq
Reverse (-)
6373898 .. 6374308
411 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1081100.v1.1.491

Sequence Viewer

Length: 411 bp
ATGATGGTGCTTGATGGTTGCATTATTGAACTCCCCCGCATGAGTAAAGGACTGGTACCCTGCGATGATGATGATCCCTTGGAGTATACCTCTTGGATGCTCAAGATAGTTAAAAACGACTTGTTTCTACTCGAAAACCAACTTCCTTGGAAAGTTCTTGAATGTCTATTCTGCCACACGGTAGGAAATGACAAGTATTCTCTACTTAAGCTTGCTCTTGAATTCTTTGACTCGTCCGTATTGGACCAGACTCCACAGATCAAAGGAGGGGTGCAAACTAGACATTTACTTGATGCCATAAGAGCCTCTTTAATTTCCTCGCACCAAGCCGCAATCAGCACTGAAAAGGTTTTGGGAACTTATACCAACTGTCACGGAACTTCTTCAAGCTGGTGTCAAATTCAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

137

Amino Acids

15.3

Weight (kDa)

5.09

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 113 1.9e-17 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 86
AciI CCGC 2 cut(s) 37, 330
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 2 cut(s) 221, 399
AfaI GTAC 1 cut(s) 57
AflII CTTAAG 1 cut(s) 206
AgsI TTSAA 5 cut(s) 29, 161, 221, 387, 404
AluBI AGCT 2 cut(s) 211, 390
AluI AGCT 2 cut(s) 211, 390
AlwI GGATC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 221, 399
Asp700I GAANNNNTTC 1 cut(s) 382
Asp718I GGTACC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 244
AvaII GGWCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 55
BccI CCATC 1 cut(s) 8
BfaI CTAG 1 cut(s) 279
BfrI CTTAAG 1 cut(s) 206
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 2 cut(s) 87, 283
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpuEI CTTGAG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 78, 146
Bse1I ACTGG 1 cut(s) 57
Bse8I GATNNNNATC 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 78, 146
BseGI GGATG 1 cut(s) 102
BseJI GATNNNNATC 1 cut(s) 72
BseNI ACTGG 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 73, 258
BspACI CCGC 2 cut(s) 37, 330
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 55
BspTI CTTAAG 1 cut(s) 206
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 78, 146
BssMI GATC 2 cut(s) 73, 258
BssNAI GTATAC 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 78, 146
Bst1107I GTATAC 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 181, 371
BstAFI CTTAAG 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 213
BstF5I GGATG 1 cut(s) 102
BstKTI GATC 2 cut(s) 76, 261
BstMBI GATC 2 cut(s) 73, 258
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstZ17I GTATAC 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 78
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 56
CviAII CATG 1 cut(s) 40
CviJI RGCY 4 cut(s) 211, 305, 329, 390
CviKI_1 RGCY 4 cut(s) 211, 305, 329, 390
CviQI GTAC 1 cut(s) 56
DpnI GATC 2 cut(s) 75, 260
DpnII GATC 2 cut(s) 73, 258
Eco130I CCWWGG 2 cut(s) 78, 146
Eco47I GGWCC 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 221
EcoT14I CCWWGG 2 cut(s) 78, 146
ErhI CCWWGG 2 cut(s) 78, 146
FaeI CATG 1 cut(s) 43
FaiI YATR 4 cut(s) 41, 87, 299, 363
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FatI CATG 1 cut(s) 39
FauI CCCGC 1 cut(s) 44
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 2 cut(s) 230, 250
Hpy166II GTNNAC 1 cut(s) 87
Hpy188III TCNNGA 4 cut(s) 103, 158, 218, 404
Hpy8I GTNNAC 1 cut(s) 87
HpyCH4III ACNGT 2 cut(s) 181, 371
HpyCH4V TGCA 2 cut(s) 21, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
Hsp92II CATG 1 cut(s) 43
KpnI GGTACC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 73, 258
LpnPI CCDG 4 cut(s) 38, 73, 260, 376
LweI GCATC 2 cut(s) 87, 283
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 371
MalI GATC 2 cut(s) 75, 260
MboI GATC 2 cut(s) 73, 258
MboII GAAGA 1 cut(s) 375
MluCI AATT 3 cut(s) 221, 312, 399
MlyI GAGTC 2 cut(s) 224, 244
MnlI CCTC 4 cut(s) 100, 260, 316, 328
MroXI GAANNNNTTC 1 cut(s) 382
MseI TTAA 3 cut(s) 111, 207, 311
MspCI CTTAAG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 2 cut(s) 73, 258
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 382
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 2 cut(s) 224, 244
PpsI GAGTC 2 cut(s) 224, 244
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 244
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SaqAI TTAA 3 cut(s) 111, 207, 311
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 2 cut(s) 73, 258
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 2 cut(s) 224, 244
SetI ASST 4 cut(s) 92, 213, 351, 392
SfaNI GCATC 2 cut(s) 87, 283
SinI GGWCC 1 cut(s) 244
SmlI CTYRAG 2 cut(s) 101, 206
SmoI CTYRAG 2 cut(s) 101, 206
Sse9I AATT 3 cut(s) 221, 312, 399
SsiI CCGC 2 cut(s) 37, 330
SspMI CTAG 1 cut(s) 279
StyI CCWWGG 2 cut(s) 78, 146
TaaI ACNGT 2 cut(s) 181, 371
TaqI TCGA 1 cut(s) 132
TasI AATT 3 cut(s) 221, 312, 399
TauI GCSGC 1 cut(s) 332
Tru1I TTAA 3 cut(s) 111, 207, 311
Tru9I TTAA 3 cut(s) 111, 207, 311
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 371
TspGWI ACGGA 2 cut(s) 226, 390
TspRI CASTG 1 cut(s) 346
Vha464I CTTAAG 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 2 cut(s) 221, 399
XmiI GTMKAC 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 382
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.