Rh2AG570400

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000351
Physical Location & Seq
Forward (+)
80058664 .. 80059736
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG570400.1

Sequence Viewer

Length: 609 bp
ATGGAAGGAATTAAACTATGGTACTTGCGTTTCCTCCTTCATCGAACACCAACTCCTGAAACCAGTTTGGAGCATTTGGTCAAAAGTATTAGAGCCATAGAACAACTTTGTCGCGATTGCTATGAAGAGGAAAGTAATCTGAGTAGTGATCAGTTTGTAGAAGTGATGGTGGTTGATGGTTGCTTCATCGTTGAATTCATGCTCAAGACAGAACGTAGAGAGTGTGTGATGATTCTTGTGAACAAGCGCATTGGATATGATTTTACCTCATATGCCAGGGTCCTGCATTACCTTATTAAGTCAGGCAAAGATGCAGACTTTCTCATGCAGAAGGGAATCATAAAAACCAGATTGAGCAAGGAGGACATAGCTCGTCTCTTCACCGGTGTTTGCAATAACACTACATTTGCTTCTGACTCTTTCTCTGATCTCTCCCGGGAAGTTCATTTGTTTTCCAAGGAGCGTTGGCTGCAAAGATGCCTAATTAGCATTAAACGGGATTATTTATACAATCCATCTTCAATCTGGTCAATTTCTAATGCTGTCTTCCTTGTCATAATTCTCACATTCACACAAACCTTATATACTGTTCTCTCTTACTACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

202

Amino Acids

23.75

Weight (kDa)

8.17

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 73 2.1e-17 Plant protein of unknown function
DUF247 PF03140 86 - 186 3.4e-16 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 1 cut(s) 23
AgeI ACCGGT 1 cut(s) 383
AgsI TTSAA 2 cut(s) 194, 522
AjnI CCWGG 1 cut(s) 275
AloI GAACNNNNNNTCC 2 cut(s) 37, 69
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw26I GTCTC 1 cut(s) 380
Ama87I CYCGRG 1 cut(s) 435
ApeKI GCWGC 1 cut(s) 469
ApoI RAATTY 1 cut(s) 194
AsiGI ACCGGT 1 cut(s) 383
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 280
AsuC2I CCSGG 2 cut(s) 436, 437
AsuHPI GGTGA 1 cut(s) 373
AvaI CYCGRG 1 cut(s) 435
AvaII GGWCC 1 cut(s) 280
BaeI ACNNNNGTAYC 2 cut(s) 13, 46
BbsI GAAGAC 1 cut(s) 538
BbvI GCAGC 1 cut(s) 456
BccI CCATC 3 cut(s) 160, 170, 523
BciT130I CCWGG 1 cut(s) 277
BclI TGATCA 1 cut(s) 148
BcnI CCSGG 2 cut(s) 436, 437
BcoDI GTCTC 1 cut(s) 380
BisI GCNGC 1 cut(s) 470
BlsI GCNGC 1 cut(s) 471
Bme1390I CCNGG 3 cut(s) 277, 436, 437
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 3 cut(s) 277, 436, 437
BmsI GCATC 2 cut(s) 301, 467
BpiI GAAGAC 1 cut(s) 538
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 2 cut(s) 436, 437
BsaJI CCNNGG 3 cut(s) 276, 435, 456
BsaWI WCCGGW 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 3 cut(s) 276, 435, 456
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 114
BshTI ACCGGT 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 435
BsiSI CCGG 2 cut(s) 384, 436
BsmAI GTCTC 1 cut(s) 380
BsmBI CGTCTC 1 cut(s) 380
BsoBI CYCGRG 1 cut(s) 435
Bsp143I GATC 2 cut(s) 148, 427
Bsp68I TCGCGA 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 383
BsrI ACTGG 1 cut(s) 63
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 3 cut(s) 276, 435, 456
BssMI GATC 2 cut(s) 148, 427
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 2 cut(s) 120, 383
BstDEI CTNAG 1 cut(s) 140
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 2 cut(s) 151, 430
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 2 cut(s) 148, 427
BstMWI GCNNNNNNNGC 2 cut(s) 469, 486
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 3 cut(s) 275, 434, 435
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 456
BstV2I GAAGAC 1 cut(s) 538
BtuMI TCGCGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 249
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 280
Cfr9I CCCGGG 1 cut(s) 435
Csp6I GTAC 1 cut(s) 22
CspAI ACCGGT 1 cut(s) 383
CviAII CATG 2 cut(s) 199, 325
CviJI RGCY 3 cut(s) 95, 371, 469
CviKI_1 RGCY 3 cut(s) 95, 371, 469
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 150, 429
DpnII GATC 2 cut(s) 148, 427
Eam1104I CTCTTC 2 cut(s) 120, 383
EarI CTCTTC 2 cut(s) 120, 383
Eco130I CCWWGG 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 2 cut(s) 202, 328
FatI CATG 2 cut(s) 198, 324
FauNDI CATATG 1 cut(s) 271
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 470
GlaI GCGC 1 cut(s) 248
GluI GCNGC 1 cut(s) 470
HapII CCGG 2 cut(s) 384, 436
HhaI GCGC 1 cut(s) 249
Hin1II CATG 2 cut(s) 202, 328
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HinfI GANTC 3 cut(s) 232, 336, 416
HpaII CCGG 2 cut(s) 384, 436
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 141, 415, 427
Hpy188III TCNNGA 3 cut(s) 56, 113, 205
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 2 cut(s) 47, 325
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 5 cut(s) 286, 314, 328, 393, 472
HpyF10VI GCNNNNNNNGC 2 cut(s) 469, 486
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 2 cut(s) 202, 328
HspAI GCGC 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 2 cut(s) 148, 427
LmnI GCTCC 2 cut(s) 70, 460
Lsp1109I GCAGC 1 cut(s) 456
LweI GCATC 2 cut(s) 301, 467
MaeII ACGT 1 cut(s) 214
MalI GATC 2 cut(s) 150, 429
MboI GATC 2 cut(s) 148, 427
MboII GAAGA 4 cut(s) 137, 370, 510, 538
MluCI AATT 5 cut(s) 9, 194, 483, 531, 558
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 4 cut(s) 44, 121, 277, 355
MseI TTAA 3 cut(s) 12, 297, 492
MspI CCGG 2 cut(s) 384, 436
MspR9I CCNGG 3 cut(s) 277, 436, 437
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 469, 486
NciI CCSGG 2 cut(s) 436, 437
NdeI CATATG 1 cut(s) 271
NdeII GATC 2 cut(s) 148, 427
NlaIII CATG 2 cut(s) 202, 328
NlaIV GGNNCC 1 cut(s) 281
NruI TCGCGA 1 cut(s) 114
PfeI GAWTC 2 cut(s) 232, 336
PinAI ACCGGT 1 cut(s) 383
PkrI GCNGC 1 cut(s) 471
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 1 cut(s) 280
PspPPI RGGWCCY 1 cut(s) 280
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 3 cut(s) 12, 297, 492
SatI GCNGC 1 cut(s) 470
Sau3AI GATC 2 cut(s) 148, 427
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 3 cut(s) 277, 436, 437
SetI ASST 5 cut(s) 217, 269, 294, 373, 581
SfaNI GCATC 2 cut(s) 301, 467
SgrAI CRCCGGYG 1 cut(s) 383
SinI GGWCC 1 cut(s) 280
SmaI CCCGGG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 5 cut(s) 9, 194, 483, 531, 558
StyD4I CCNGG 3 cut(s) 275, 434, 435
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 1 cut(s) 589
TaiI ACGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 43
TasI AATT 5 cut(s) 9, 194, 483, 531, 558
TfiI GAWTC 2 cut(s) 232, 336
Tru1I TTAA 3 cut(s) 12, 297, 492
Tru9I TTAA 3 cut(s) 12, 297, 492
TseI GCWGC 1 cut(s) 469
TspDTI ATGAA 5 cut(s) 29, 138, 175, 187, 434
TspMI CCCGGG 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 280
XapI RAATTY 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 522
XmaI CCCGGG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.