MD17G1242900.v1.1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000351
Physical Location & Seq
Forward (+)
29196590 .. 29197275
686 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1242900.v1.1.491

Sequence Viewer

Length: 525 bp
ATGAAAATTCCATATATGAAAATTGGAGCCAACACAGAATGCGTCTTTAGAAACCTCATAGCCTACGAACGGTGTTCAATGAATCCCCATTACATTTTGTCTTATGCCATGCTGCTGAATCAGCTTATCAAGTCTACCAAAGATTTAGACTCTCTCGTTCGGAAAGAAATTGTAGTAACCGACCTGAGCAAGGAAGACACTGTTTCTTTGTTGAATAGGCTTTGCAATGACACTGCATTCATTCCGTTCATTTACTCTCAACTCTCCTTTGACGTGTATTTCTATAATCGAGATCGTTGGCTAAGGCGTTGGCTTGCAAGGATCAAAAGGGATTATCTGTACAATCCATCGTCAATCTGGTCAGTCTCAAATGCGGTCATCATTATTCTCATTCTCACCACCATGCAGACCCTATATATGGTGTTCTCGCCTACCACAATTAGTAACCTTCCAATCAGTCAATGTTCGCCGGAGGACAAAAAATTCAACGAGACTTGTGTGACTGCAGGCAAAGTTATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

175

Amino Acids

20.31

Weight (kDa)

9.08

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 130 1.4e-29 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 134
AciI CCGC 1 cut(s) 374
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 2 cut(s) 6, 482
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 3 cut(s) 69, 190, 418
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 3 cut(s) 78, 214, 487
AjiI CACGTC 1 cut(s) 274
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 370, 485
AlwI GGATC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 2 cut(s) 6, 482
AsuHPI GGTGA 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 99
BccI CCATC 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 370, 485
BfmI CTRYAG 1 cut(s) 504
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BmgBI CACGTC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 201
Bpu10I CCTNAGC 2 cut(s) 185, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 190, 418
Bse3DI GCAATG 1 cut(s) 232
BseLI CCNNNNNNNGG 3 cut(s) 69, 190, 418
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 470
BslI CCNNNNNNNGG 3 cut(s) 69, 190, 418
BsmAI GTCTC 2 cut(s) 370, 485
BsmI GAATGC 2 cut(s) 44, 236
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 292, 321
BspACI CCGC 1 cut(s) 374
BspCNI CTCAG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 232
BsrGI TGTACA 1 cut(s) 339
BssMI GATC 2 cut(s) 292, 321
Bst4CI ACNGT 2 cut(s) 72, 202
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 315, 508
BstDEI CTNAG 2 cut(s) 185, 302
BstENI CCTNNNNNAGG 1 cut(s) 188
BstKTI GATC 2 cut(s) 295, 324
BstMAI GTCTC 2 cut(s) 370, 485
BstMBI GATC 2 cut(s) 292, 321
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 504
BstV1I GCAGC 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 201
BtrI CACGTC 1 cut(s) 274
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 198, 231
Cac8I GCNNGC 2 cut(s) 315, 508
CseI GACGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 340
CviAII CATG 2 cut(s) 109, 403
CviJI RGCY 6 cut(s) 29, 62, 124, 220, 301, 313
CviKI_1 RGCY 6 cut(s) 29, 62, 124, 220, 301, 313
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 185, 302
DpnI GATC 2 cut(s) 294, 323
DpnII GATC 2 cut(s) 292, 321
EcoNI CCTNNNNNAGG 1 cut(s) 188
FaeI CATG 2 cut(s) 112, 406
FatI CATG 2 cut(s) 108, 402
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 113
HapII CCGG 1 cut(s) 470
HgaI GACGC 1 cut(s) 31
Hin1II CATG 2 cut(s) 112, 406
HinfI GANTC 3 cut(s) 82, 118, 149
HpaII CCGG 1 cut(s) 470
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 2 cut(s) 72, 202
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 5 cut(s) 225, 236, 317, 406, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 2 cut(s) 185, 302
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 2 cut(s) 112, 406
Kzo9I GATC 2 cut(s) 292, 321
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 4 cut(s) 197, 343, 483, 492
Lsp1109I GCAGC 1 cut(s) 99
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 3 cut(s) 175, 443, 499
MalI GATC 2 cut(s) 294, 323
MboI GATC 2 cut(s) 292, 321
MboII GAAGA 1 cut(s) 206
MluCI AATT 5 cut(s) 6, 21, 168, 438, 482
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 2 cut(s) 65, 466
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 1 cut(s) 470
Mva1269I GAATGC 2 cut(s) 44, 236
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 2 cut(s) 292, 321
NlaIII CATG 2 cut(s) 112, 406
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 499
PctI GAATGC 2 cut(s) 44, 236
PfeI GAWTC 2 cut(s) 82, 118
PkrI GCNGC 1 cut(s) 114
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 508
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 401
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 2 cut(s) 292, 321
SchI GAGTC 1 cut(s) 143
SetI ASST 5 cut(s) 57, 126, 186, 276, 450
SfcI CTRYAG 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 401
Sse9I AATT 5 cut(s) 6, 21, 168, 438, 482
SsiI CCGC 1 cut(s) 374
TaaI ACNGT 2 cut(s) 72, 202
TaiI ACGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 289
TasI AATT 5 cut(s) 6, 21, 168, 438, 482
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 2 cut(s) 82, 118
TscAI CASTG 2 cut(s) 205, 238
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 5 cut(s) 17, 32, 95, 229, 238
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 2 cut(s) 205, 238
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 2 cut(s) 6, 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.