Rroxscaffold_2G00087320

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000351
Physical Location & Seq
Reverse (-)
9399150 .. 9399758
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087320.1

Sequence Viewer

Length: 609 bp
ATGATTGTGGTTGACGATTGCATTGTTATTGAATTCATGCTCGGAAGGACATACAGCAAGATTCTTCAGAATGACCCTCTGTCCCAAAGTTCATGGATGCGCACTCTAGTTGTATCAGATTTGTTTCTACTGGCAAACCAGCTGCCTTGGTTAGTTCTTGATTGTTTATTCCAATATGTCGCAAAAGAAAATGCGGACGATGAACCTGTTGGAAAGCATAAGGTATCTGAGCTTATTCTCAAATTTTGTCAGTTGCACACCCTGCGCTTTCTAATGCCGAATGATGGAGCATCCGAAATCAGGCATTTACTTGACCGCATAAGAATTGGTATAGTTGGACCAGAAAAGCTAATAACCATCAATTCACGTCGTTATTTGGTTCCCTGTCTGACAGAACTCCGGCAAATTGGAGTCATATTTAAACGTGGAGACATGTCTTGCGACACACTCATAGCCTTCCACAATGGAGTGACTGAGATACGGGAAATATGTATTAGCACTAATCGATCTCTCTTTACAACCTCATTGCCCTCGAAGAATGCCAACAAGGGCTCATTGGGCCGGGTATGCATTTACCTCTTATGCCAGGGTCTTGCATTATCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

202

Amino Acids

22.89

Weight (kDa)

8.11

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 171 3.9e-24 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 101
AciI CCGC 2 cut(s) 194, 316
AcsI RAATTY 2 cut(s) 32, 242
AcuI CTGAAG 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 284, 300
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 1 cut(s) 32
AhdI GACNNNNNGTC 1 cut(s) 79
AjiI CACGTC 1 cut(s) 368
AjnI CCWGG 1 cut(s) 585
AluBI AGCT 3 cut(s) 142, 232, 349
AluI AGCT 3 cut(s) 142, 232, 349
Alw26I GTCTC 1 cut(s) 423
AoxI GGCC 1 cut(s) 559
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 2 cut(s) 32, 242
AspLEI GCGC 2 cut(s) 102, 267
AspS9I GGNCC 2 cut(s) 338, 559
AsuC2I CCSGG 1 cut(s) 563
AvaII GGWCC 1 cut(s) 338
BanII GRGCYC 1 cut(s) 554
BbvI GCAGC 1 cut(s) 129
BccI CCATC 2 cut(s) 278, 365
BciT130I CCWGG 1 cut(s) 587
BcnI CCSGG 1 cut(s) 563
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 1 cut(s) 107
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 2 cut(s) 563, 587
Bme18I GGWCC 1 cut(s) 338
BmeRI GACNNNNNGTC 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 368
BmgT120I GGNCC 2 cut(s) 338, 559
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 2 cut(s) 563, 587
BmsI GCATC 2 cut(s) 87, 299
BpuMI CCSGG 1 cut(s) 563
Bsa29I ATCGAT 1 cut(s) 505
BsaJI CCNNGG 2 cut(s) 146, 586
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 300
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 1 cut(s) 524
BseBI CCWGG 1 cut(s) 587
BseCI ATCGAT 1 cut(s) 505
BseDI CCNNGG 2 cut(s) 146, 586
BseGI GGATG 2 cut(s) 102, 290
BseLI CCNNNNNNNGG 2 cut(s) 284, 300
BseMI GCAATG 1 cut(s) 524
BseMII CTCAG 2 cut(s) 219, 465
BseNI ACTGG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 561
BshVI ATCGAT 1 cut(s) 505
BsiSI CCGG 2 cut(s) 400, 562
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 284, 300
BsmAI GTCTC 1 cut(s) 423
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 1 cut(s) 561
Bsp1286I GDGCHC 1 cut(s) 554
Bsp143I GATC 1 cut(s) 506
BspACI CCGC 2 cut(s) 194, 316
BspANI GGCC 1 cut(s) 561
BspCNI CTCAG 2 cut(s) 220, 466
BspDI ATCGAT 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 524
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 146, 586
BssMI GATC 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 587
BstAPI GCANNNNNTGC 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 228, 474
BstF5I GGATG 2 cut(s) 102, 290
BstHHI GCGC 2 cut(s) 102, 267
BstKTI GATC 1 cut(s) 509
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 1 cut(s) 506
BstMWI GCNNNNNNNGC 3 cut(s) 262, 558, 567
BstNI CCWGG 1 cut(s) 587
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 2 cut(s) 561, 585
BstV1I GCAGC 1 cut(s) 129
Bsu15I ATCGAT 1 cut(s) 505
BsuRI GGCC 1 cut(s) 561
BsuTUI ATCGAT 1 cut(s) 505
BtrI CACGTC 1 cut(s) 368
BtsCI GGATG 2 cut(s) 102, 290
CfoI GCGC 2 cut(s) 102, 267
Cfr13I GGNCC 2 cut(s) 338, 559
ClaI ATCGAT 1 cut(s) 505
CviAII CATG 3 cut(s) 37, 93, 433
CviJI RGCY 6 cut(s) 142, 232, 349, 455, 552, 561
CviKI_1 RGCY 6 cut(s) 142, 232, 349, 455, 552, 561
DdeI CTNAG 2 cut(s) 228, 474
DpnI GATC 1 cut(s) 508
DpnII GATC 1 cut(s) 506
DraI TTTAAA 1 cut(s) 421
DriI GACNNNNNGTC 1 cut(s) 79
Eam1105I GACNNNNNGTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 554
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 585
EcoT14I CCWWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 3 cut(s) 40, 96, 436
FaqI GGGAC 1 cut(s) 67
FatI CATG 3 cut(s) 36, 92, 432
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 2 cut(s) 109, 277
FriOI GRGCYC 1 cut(s) 554
Fsp4HI GCNGC 1 cut(s) 143
FspAI RTGCGCAY 1 cut(s) 101
FspBI CTAG 1 cut(s) 107
FspI TGCGCA 1 cut(s) 101
GlaI GCGC 2 cut(s) 101, 266
GluI GCNGC 1 cut(s) 143
HaeIII GGCC 1 cut(s) 561
HapII CCGG 2 cut(s) 400, 562
HhaI GCGC 2 cut(s) 102, 267
Hin1II CATG 3 cut(s) 40, 96, 436
Hin6I GCGC 2 cut(s) 100, 265
HinP1I GCGC 2 cut(s) 100, 265
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 2 cut(s) 61, 411
HpaII CCGG 2 cut(s) 400, 562
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 6 cut(s) 44, 69, 118, 229, 295, 390
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 1 cut(s) 372
HpyAV CCTTC 2 cut(s) 39, 466
HpyCH4IV ACGT 2 cut(s) 367, 424
HpyCH4V TGCA 4 cut(s) 21, 256, 570, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 262, 558, 567
HpyF3I CTNAG 2 cut(s) 228, 474
HpySE526I ACGT 2 cut(s) 367, 424
Hsp92II CATG 3 cut(s) 40, 96, 436
HspAI GCGC 2 cut(s) 100, 265
Kzo9I GATC 1 cut(s) 506
LmnI GCTCC 1 cut(s) 287
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 2 cut(s) 87, 299
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 367, 424
MaeIII GTNAC 1 cut(s) 469
MalI GATC 1 cut(s) 508
MboI GATC 1 cut(s) 506
MboII GAAGA 2 cut(s) 56, 547
MhlI GDGCHC 1 cut(s) 554
MluCI AATT 5 cut(s) 32, 242, 324, 361, 405
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 2 cut(s) 190, 316
MnlI CCTC 4 cut(s) 87, 532, 541, 587
Mph1103I ATGCAT 1 cut(s) 572
MseI TTAA 2 cut(s) 420, 607
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 2 cut(s) 400, 562
MspR9I CCNGG 2 cut(s) 563, 587
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 1 cut(s) 587
MwoI GCNNNNNNNGC 3 cut(s) 262, 558, 567
NciI CCSGG 1 cut(s) 563
NdeII GATC 1 cut(s) 506
NlaIII CATG 3 cut(s) 40, 96, 436
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 1 cut(s) 469
NsbI TGCGCA 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 572
NspI RCATGY 1 cut(s) 436
PciI ACATGT 1 cut(s) 432
PctI GAATGC 1 cut(s) 544
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PscI ACATGT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 2 cut(s) 338, 559
PvuII CAGCTG 1 cut(s) 142
SaqAI TTAA 2 cut(s) 420, 607
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 1 cut(s) 506
Sau96I GGNCC 2 cut(s) 338, 559
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 2 cut(s) 563, 587
SduI GDGCHC 1 cut(s) 554
SetI ASST 9 cut(s) 144, 208, 225, 234, 351, 370, 427, 524, 579
SfaNI GCATC 2 cut(s) 87, 299
SinI GGWCC 1 cut(s) 338
Sse9I AATT 5 cut(s) 32, 242, 324, 361, 405
SsiI CCGC 2 cut(s) 194, 316
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 561, 585
StyI CCWWGG 1 cut(s) 146
TaiI ACGT 2 cut(s) 370, 427
TaqI TCGA 2 cut(s) 505, 533
TasI AATT 5 cut(s) 32, 242, 324, 361, 405
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 2 cut(s) 420, 607
Tru9I TTAA 2 cut(s) 420, 607
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 3 cut(s) 25, 81, 216
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 2 cut(s) 32, 242
XceI RCATGY 1 cut(s) 436
XspI CTAG 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.