Rh2CG552400

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000351
Physical Location & Seq
Forward (+)
73182279 .. 73184929
2651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG552400.1

Sequence Viewer

Length: 636 bp
ATGGAAGGAATTAAACTATGGTACTTGCGTTCCCTCCTTCATCGAACACCAACTCCTGAAACCAGTTTGGAGCATTTGGTCAAAAGTATTAGAGCCATAGAACAACTTTGTCGCGATTGCTATGACAATGAAAGTAATCTGAGTAGTGATCAGTTTGTAGAAGTGATGGTGGTTGATGGTTGCTTCATCGTTGAATTCATGCTCAAGACAGAACATAGAGAGTGTGTGACTGATTCTGTAACTGAAAATCTATGGATACGTTCACCTCTCATATCTGACTTGTTTCTACTCAAAAACCAGCTGCCTTGGCGGCTAGTACTTGAATGTTTATTCCAACTGATAAAGGAAAATACTTGTAATGAATCTGTTGGAAAGTACACTTCTCTATCTGAGCTCACTCACAAAATCATGGAGTTTTGCACTATTGGCCATCTAGAGAGTACTGGTGGAGCATATGAAATCAGGCACTTACTTGACTACATGAGAGCAGCTATAGTTGGACCAAAAACAATAACCATTCTTACTCTTCCTCGTTACTTGTTTCCCTGTGTGACAGACCTGCTACAACTTGGAGTCAGATTTAAATCTAGAGATAGTTCTTGCAATCTGCTCAACATACCTTCTGCGATGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

211

Amino Acids

24.29

Weight (kDa)

5.56

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 206 1.3e-36 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 567
AccII CGCG 1 cut(s) 114
AciI CCGC 1 cut(s) 310
AcoI YGGCCR 1 cut(s) 427
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 4 cut(s) 23, 318, 377, 442
AgsI TTSAA 2 cut(s) 194, 323
AloI GAACNNNNNNTCC 2 cut(s) 37, 69
AluBI AGCT 3 cut(s) 301, 394, 491
AluI AGCT 3 cut(s) 301, 394, 491
Alw21I GWGCWC 1 cut(s) 396
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 2 cut(s) 301, 488
ApoI RAATTY 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 255
AvaII GGWCC 1 cut(s) 500
BaeI ACNNNNGTAYC 2 cut(s) 13, 46
BalI TGGCCA 1 cut(s) 429
BanII GRGCYC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 288, 500
BccI CCATC 4 cut(s) 160, 170, 438, 622
BciVI GTATCC 1 cut(s) 249
BclI TGATCA 1 cut(s) 148
BfaI CTAG 3 cut(s) 314, 434, 588
BfmI CTRYAG 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 567
BfuI GTATCC 1 cut(s) 249
BglI GCCNNNNNGGC 1 cut(s) 310
BisI GCNGC 3 cut(s) 302, 311, 489
BlsI GCNGC 3 cut(s) 303, 312, 490
BmcAI AGTACT 2 cut(s) 318, 442
Bme18I GGWCC 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 500
BpuEI CTTGAG 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 583
BsaJI CCNNGG 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bse1I ACTGG 2 cut(s) 63, 448
Bse8I GATNNNNATC 1 cut(s) 583
BseDI CCNNGG 1 cut(s) 305
BseJI GATNNNNATC 1 cut(s) 583
BseMII CTCAG 2 cut(s) 131, 381
BseNI ACTGG 2 cut(s) 63, 448
BseXI GCAGC 2 cut(s) 288, 500
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 396
BsnI GGCC 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 1 cut(s) 148
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 1 cut(s) 310
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 2 cut(s) 132, 382
BspFNI CGCG 1 cut(s) 114
BspMI ACCTGC 1 cut(s) 567
BsrI ACTGG 2 cut(s) 63, 448
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 531
BstDEI CTNAG 2 cut(s) 140, 390
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 3 cut(s) 307, 310, 426
BstSFI CTRYAG 1 cut(s) 492
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 288, 500
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 429
BtuMI TCGCGA 1 cut(s) 114
BveI ACCTGC 1 cut(s) 567
Cfr13I GGNCC 1 cut(s) 500
Csp6I GTAC 4 cut(s) 22, 317, 376, 441
CviAII CATG 3 cut(s) 199, 409, 481
CviJI RGCY 6 cut(s) 95, 301, 313, 394, 429, 491
CviKI_1 RGCY 6 cut(s) 95, 301, 313, 394, 429, 491
CviQI GTAC 4 cut(s) 22, 317, 376, 441
DdeI CTNAG 2 cut(s) 140, 390
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DraI TTTAAA 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Ecl136II GAGCTC 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 500
Eco53kI GAGCTC 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 3 cut(s) 202, 412, 484
FatI CATG 3 cut(s) 198, 408, 480
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 302, 311, 489
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 3 cut(s) 302, 311, 489
FspBI CTAG 3 cut(s) 314, 434, 588
GluI GCNGC 3 cut(s) 302, 311, 489
HaeIII GGCC 1 cut(s) 429
Hin1II CATG 3 cut(s) 202, 412, 484
HinfI GANTC 3 cut(s) 233, 362, 573
HphI GGTGA 1 cut(s) 255
Hpy166II GTNNAC 2 cut(s) 263, 378
Hpy188I TCNGA 4 cut(s) 141, 277, 391, 578
Hpy188III TCNNGA 5 cut(s) 56, 113, 205, 434, 588
Hpy8I GTNNAC 2 cut(s) 263, 378
HpyAV CCTTC 2 cut(s) 47, 630
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 2 cut(s) 420, 603
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 310, 426
HpyF3I CTNAG 2 cut(s) 140, 390
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 3 cut(s) 202, 412, 484
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 70, 449
LpnPI CCDG 7 cut(s) 69, 76, 311, 429, 448, 559, 572
Lsp1109I GCAGC 2 cut(s) 288, 500
MaeI CTAG 3 cut(s) 314, 434, 588
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 4 cut(s) 226, 238, 533, 550
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 518
MhlI GDGCHC 1 cut(s) 396
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 2 cut(s) 9, 194
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 1 cut(s) 582
MmeI TCCRAC 3 cut(s) 349, 358, 478
MnlI CCTC 3 cut(s) 44, 276, 540
Mox20I TGGCCA 1 cut(s) 429
MscI TGGCCA 1 cut(s) 429
MseI TTAA 2 cut(s) 12, 582
Msp20I TGGCCA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 301
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 307, 310, 426
NdeI CATATG 1 cut(s) 454
NdeII GATC 1 cut(s) 148
NlaIII CATG 3 cut(s) 202, 412, 484
NmuCI GTSAC 2 cut(s) 226, 550
NruI TCGCGA 1 cut(s) 114
PfeI GAWTC 2 cut(s) 233, 362
PkrI GCNGC 3 cut(s) 303, 312, 490
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
Psp124BI GAGCTC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 500
PvuII CAGCTG 1 cut(s) 301
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 4 cut(s) 23, 318, 377, 442
RsaNI GTAC 4 cut(s) 22, 317, 376, 441
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 12, 582
SatI GCNGC 3 cut(s) 302, 311, 489
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 500
ScaI AGTACT 2 cut(s) 318, 442
SchI GAGTC 1 cut(s) 582
SduI GDGCHC 1 cut(s) 396
SetI ASST 7 cut(s) 262, 268, 303, 396, 493, 561, 622
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 500
SmiI ATTTAAAT 1 cut(s) 583
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 2 cut(s) 9, 194
SsiI CCGC 1 cut(s) 310
SspMI CTAG 3 cut(s) 314, 434, 588
SstI GAGCTC 1 cut(s) 396
StyI CCWWGG 1 cut(s) 305
SwaI ATTTAAAT 1 cut(s) 583
TaiI ACGT 1 cut(s) 262
TaqI TCGA 1 cut(s) 43
TasI AATT 2 cut(s) 9, 194
TatI WGTACW 3 cut(s) 316, 375, 440
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 2 cut(s) 233, 362
Tru1I TTAA 2 cut(s) 12, 582
Tru9I TTAA 2 cut(s) 12, 582
TseFI GTSAC 2 cut(s) 226, 550
TseI GCWGC 2 cut(s) 301, 488
Tsp45I GTSAC 2 cut(s) 226, 550
TspDTI ATGAA 6 cut(s) 29, 144, 175, 187, 375, 471
VpaK11BI GGWCC 1 cut(s) 500
XapI RAATTY 1 cut(s) 194
XbaI TCTAGA 2 cut(s) 433, 587
XspI CTAG 3 cut(s) 314, 434, 588
ZrmI AGTACT 2 cut(s) 318, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.