Rorug02G0503400

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000351
Physical Location & Seq
Reverse (-)
63535909 .. 63536754
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0503400.1

Sequence Viewer

Length: 846 bp
ATGCAGCTGCAGCCTGCAAATACAGGTAGCGATCTAATATGGACGCAATGTCAGCCGTGTCAAGCTTGCTACGAGACCAAATATGCCCTCTTCGACTCGAGAAATTCCTCGACTTATAGAAACATTACTTGTTCTGCAAGGGAGTGTAGACTTCTTGGAGATGCCAGACCACCAAACTATTCACCAAACATTTGTAGAAAATTTCCTGAAGGAAATTGTGATTATCGTGTCACGTATGCAGACAAGGCATCCTCTACAGGCGTATTGGCAAAAGAAACAATTACCTTGACATCCAAAACAGGTAAAGTTGTAACTCTAAAAGATATTGTCTTTGGGTGTGGGTTTTTGAATGATGCTGGTCCTGTTGGTGCAACTGGAAATCAAATGGGAGTGATTGGGCTTGGAAAGGGGCCCTTGTCATTTGTTTCTCAAATTGCTCCCCATGTTGGAGGGAAGAGATTTTCTTATTGCTTGGTGCCCCTAGATACTGATCCCTCAACTAAAAGCCAGATCAATTTTGGGAATGGGAGTGAAGTTTTGGGTGAAGGGGTGGTCTCAACACCATTGGTTGATATAGATGGAGAATCTTATGTTGTGGCGGTAGAAGGAATTACCATCGGAAATGAATTTGTTCCGTTCAACTCATCAAAGACATTGGCCAATAAACTTAACATGATTGTCGACTCAGGCTCAACTCTTGGAGATGTACCTCGAGATATTTTTGACCGGGTGGTAACTCAGTTGAATATGACGCTTGATCCAGAATTAGAGCCGTACATTTACACTGACTCGGAAGATAATTCAACTTCATTGTGCCTCAACTCTTTTTTTTTTGAGAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

281

Amino Acids

30.44

Weight (kDa)

4.86

Isoelectric Point (pI)

30.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 7 - 175 2.5e-40 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 475
AccI GTMKAC 2 cut(s) 148, 681
AciI CCGC 1 cut(s) 599
AclWI GGATC 2 cut(s) 485, 752
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 3 cut(s) 103, 200, 626
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 2 cut(s) 708, 776
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 4 cut(s) 349, 640, 745, 804
AhdI GACNNNNNGTC 1 cut(s) 48
AluBI AGCT 2 cut(s) 7, 65
AluI AGCT 2 cut(s) 7, 65
Alw26I GTCTC 2 cut(s) 68, 559
AlwI GGATC 2 cut(s) 485, 752
Ama87I CYCGRG 2 cut(s) 97, 711
AoxI GGCC 2 cut(s) 410, 657
ApaI GGGCCC 1 cut(s) 414
ApeKI GCWGC 3 cut(s) 4, 7, 10
ApoI RAATTY 3 cut(s) 103, 200, 626
Asp700I GAANNNNTTC 1 cut(s) 630
AspS9I GGNCC 3 cut(s) 359, 410, 411
AsuC2I CCSGG 1 cut(s) 728
AsuHPI GGTGA 2 cut(s) 174, 554
AvaI CYCGRG 2 cut(s) 97, 711
AvaII GGWCC 1 cut(s) 359
BaeGI GKGCMC 2 cut(s) 414, 480
BalI TGGCCA 1 cut(s) 659
BanI GGYRCC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 16, 22
BccI CCATC 2 cut(s) 572, 623
BceAI ACGGC 2 cut(s) 40, 757
BcnI CCSGG 1 cut(s) 728
BcoDI GTCTC 2 cut(s) 68, 559
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 2 cut(s) 8, 255
BisI GCNGC 3 cut(s) 5, 8, 11
BlsI GCNGC 3 cut(s) 6, 9, 12
Bme1390I CCNGG 1 cut(s) 728
Bme18I GGWCC 1 cut(s) 359
BmeRI GACNNNNNGTC 1 cut(s) 48
BmeT110I CYCGRG 2 cut(s) 97, 711
BmgT120I GGNCC 3 cut(s) 359, 410, 411
BmiI GGNNCC 3 cut(s) 411, 412, 477
BmrFI CCNGG 1 cut(s) 728
BmsI GCATC 3 cut(s) 151, 257, 343
BpuMI CCSGG 1 cut(s) 728
BsaAI YACGTR 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 489
BsaI GGTCTC 2 cut(s) 68, 559
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 489
BseGI GGATG 2 cut(s) 248, 290
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 1 cut(s) 53
BseMII CTCAG 2 cut(s) 699, 752
BseNI ACTGG 1 cut(s) 379
BseSI GKGCMC 2 cut(s) 414, 480
BseXI GCAGC 2 cut(s) 16, 22
BshFI GGCC 2 cut(s) 412, 659
BshNI GGYRCC 1 cut(s) 475
BsiHKCI CYCGRG 2 cut(s) 97, 711
BsiSI CCGG 1 cut(s) 727
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 2 cut(s) 68, 559
BsnI GGCC 2 cut(s) 412, 659
Bso31I GGTCTC 2 cut(s) 68, 559
BsoBI CYCGRG 2 cut(s) 97, 711
Bsp120I GGGCCC 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 414, 480
Bsp143I GATC 4 cut(s) 31, 490, 510, 757
BspACI CCGC 1 cut(s) 599
BspANI GGCC 2 cut(s) 412, 659
BspCNI CTCAG 2 cut(s) 698, 751
BspLI GGNNCC 3 cut(s) 411, 412, 477
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 2 cut(s) 485, 752
BspT107I GGYRCC 1 cut(s) 475
BspTNI GGTCTC 2 cut(s) 68, 559
BsrDI GCAATG 1 cut(s) 53
BsrI ACTGG 1 cut(s) 379
BssMI GATC 4 cut(s) 31, 490, 510, 757
Bst6I CTCTTC 2 cut(s) 95, 449
BstBAI YACGTR 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 15, 67
BstDEI CTNAG 2 cut(s) 685, 738
BstF5I GGATG 2 cut(s) 248, 290
BstKTI GATC 4 cut(s) 34, 493, 513, 760
BstMAI GTCTC 2 cut(s) 68, 559
BstMBI GATC 4 cut(s) 31, 490, 510, 757
BstMWI GCNNNNNNNGC 3 cut(s) 10, 52, 245
BstSCI CCNGG 1 cut(s) 726
BstSFI CTRYAG 2 cut(s) 8, 255
BstSLI GKGCMC 2 cut(s) 414, 480
BstV1I GCAGC 2 cut(s) 16, 22
BsuRI GGCC 2 cut(s) 412, 659
BtsCI GGATG 2 cut(s) 248, 290
BtsIMutI CAGTG 1 cut(s) 783
Cac8I GCNNGC 2 cut(s) 15, 67
Cfr13I GGNCC 3 cut(s) 359, 410, 411
CseI GACGC 2 cut(s) 52, 760
Csp6I GTAC 2 cut(s) 707, 775
CviAII CATG 2 cut(s) 443, 673
CviQI GTAC 2 cut(s) 707, 775
DdeI CTNAG 2 cut(s) 685, 738
DpnI GATC 4 cut(s) 33, 492, 512, 759
DpnII GATC 4 cut(s) 31, 490, 510, 757
DriI GACNNNNNGTC 1 cut(s) 48
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 2 cut(s) 95, 449
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 2 cut(s) 95, 449
Eco24I GRGCYC 1 cut(s) 414
Eco31I GGTCTC 2 cut(s) 68, 559
Eco47I GGWCC 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 2 cut(s) 97, 711
EcoO109I RGGNCCY 2 cut(s) 410, 411
EcoT38I GRGCYC 1 cut(s) 414
FaeI CATG 2 cut(s) 446, 676
FaiI YATR 9 cut(s) 40, 84, 117, 237, 444, 575, 591, 674, 749
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FatI CATG 2 cut(s) 442, 672
FblI GTMKAC 2 cut(s) 148, 681
Fnu4HI GCNGC 3 cut(s) 5, 8, 11
FokI GGATG 2 cut(s) 235, 277
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 3 cut(s) 5, 8, 11
FspBI CTAG 1 cut(s) 482
GluI GCNGC 3 cut(s) 5, 8, 11
HaeIII GGCC 2 cut(s) 412, 659
HapII CCGG 1 cut(s) 727
HgaI GACGC 2 cut(s) 52, 760
Hin1II CATG 2 cut(s) 446, 676
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 4 cut(s) 95, 584, 683, 788
HpaII CCGG 1 cut(s) 727
HphI GGTGA 2 cut(s) 174, 554
Hpy166II GTNNAC 2 cut(s) 149, 682
Hpy188I TCNGA 2 cut(s) 620, 793
Hpy188III TCNNGA 4 cut(s) 99, 206, 713, 761
Hpy8I GTNNAC 2 cut(s) 149, 682
HpyAV CCTTC 3 cut(s) 203, 539, 599
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 6 cut(s) 4, 10, 17, 137, 239, 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 52, 245
HpyF3I CTNAG 2 cut(s) 685, 738
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 2 cut(s) 446, 676
Kzo9I GATC 4 cut(s) 31, 490, 510, 757
LmnI GCTCC 1 cut(s) 442
Lsp1109I GCAGC 2 cut(s) 16, 22
LweI GCATC 3 cut(s) 151, 257, 343
MaeI CTAG 1 cut(s) 482
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 3 cut(s) 229, 310, 733
MalI GATC 4 cut(s) 33, 492, 512, 759
MboI GATC 4 cut(s) 31, 490, 510, 757
MboII GAAGA 3 cut(s) 82, 466, 806
MhlI GDGCHC 2 cut(s) 414, 480
MlsI TGGCCA 1 cut(s) 659
MluNI TGGCCA 1 cut(s) 659
MlyI GAGTC 3 cut(s) 89, 677, 782
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 7 cut(s) 98, 118, 262, 443, 505, 720, 827
Mox20I TGGCCA 1 cut(s) 659
MroXI GAANNNNTTC 1 cut(s) 630
MscI TGGCCA 1 cut(s) 659
MseI TTAA 1 cut(s) 669
Msp20I TGGCCA 1 cut(s) 659
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 1 cut(s) 727
MspR9I CCNGG 1 cut(s) 728
MwoI GCNNNNNNNGC 3 cut(s) 10, 52, 245
NciI CCSGG 1 cut(s) 728
NdeII GATC 4 cut(s) 31, 490, 510, 757
NlaIII CATG 2 cut(s) 446, 676
NlaIV GGNNCC 3 cut(s) 411, 412, 477
NmuCI GTSAC 1 cut(s) 229
PaeR7I CTCGAG 2 cut(s) 97, 711
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 1 cut(s) 584
PkrI GCNGC 3 cut(s) 6, 9, 12
PleI GAGTC 3 cut(s) 89, 677, 782
PpsI GAGTC 3 cut(s) 89, 677, 782
Ppu21I YACGTR 1 cut(s) 234
PspN4I GGNNCC 3 cut(s) 411, 412, 477
PspOMI GGGCCC 1 cut(s) 410
PspPI GGNCC 3 cut(s) 359, 410, 411
PstI CTGCAG 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 7
RsaI GTAC 2 cut(s) 708, 776
RsaNI GTAC 2 cut(s) 707, 775
SalI GTCGAC 1 cut(s) 680
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 3 cut(s) 5, 8, 11
Sau3AI GATC 4 cut(s) 31, 490, 510, 757
Sau96I GGNCC 3 cut(s) 359, 410, 411
SchI GAGTC 3 cut(s) 89, 677, 782
ScrFI CCNGG 1 cut(s) 728
SduI GDGCHC 2 cut(s) 414, 480
SetI ASST 7 cut(s) 9, 28, 67, 236, 287, 304, 712
SfaNI GCATC 3 cut(s) 151, 257, 343
SfcI CTRYAG 2 cut(s) 8, 255
Sfr274I CTCGAG 2 cut(s) 97, 711
SinI GGWCC 1 cut(s) 359
SlaI CTCGAG 2 cut(s) 97, 711
SmlI CTYRAG 2 cut(s) 97, 711
SmoI CTYRAG 2 cut(s) 97, 711
SsiI CCGC 1 cut(s) 599
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 726
TaiI ACGT 1 cut(s) 236
TaqI TCGA 5 cut(s) 93, 98, 110, 681, 712
TfiI GAWTC 1 cut(s) 584
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TscAI CASTG 1 cut(s) 790
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 3 cut(s) 4, 7, 10
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 639, 798
TspGWI ACGGA 1 cut(s) 624
TspRI CASTG 1 cut(s) 790
VpaK11BI GGWCC 1 cut(s) 359
XapI RAATTY 3 cut(s) 103, 200, 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 515
XhoI CTCGAG 2 cut(s) 97, 711
XmiI GTMKAC 2 cut(s) 148, 681
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.