RchiOBHm_Chr2g0163501

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000351
Physical Location & Seq
Forward (+)
78981325 .. 78981861
537 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53167

Sequence Viewer

Length: 537 bp
ATGAGTAGTCACCAGTTTGTAGAAATGATGGTGGTTGATGGTTGCCTTGTTATTGAGTTCATGCTCGGAAGGACATACAGCAAGATTCTTCGGAATGATCCTCTGTCCCAAAGTTCATGGATGCGCACCCCACTTATATCAGATTTGTTTCTACGGGAAAACCAGTTGCCTTGGTTAGTTCTTGATTGTTTATTCCAATATCTTGTAAAAGAAAATGCTGACGATGAACCTGTTGGAAAGCATAAGTTTCTGTCTGAGCTTACTCTCAAATTTTGTCAGTTGCACACCATGCGTTTTCTAAAGCCAATTGATGGAGCATCCGAAATCAGGCATTTACTTGACCACATAAGAATTGGTATAGTTGGACCAGAAAAGCTAACCTTCAGTTCACGTCGTTATTTGGTTCCCTCTGTGACAGAACTCCGGCAAATTGGAGTCATATTTAAACGTGGAGACATGTCTGCTTGCCACACACTCAACATAGCCTTCCACAATGGAGTGATGGAGATTCCGGAAATATGTATTGGCAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

178

Amino Acids

20.49

Weight (kDa)

6.65

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 3 - 176 7.1e-33 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 311
AccIII TCCGGA 1 cut(s) 511
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 367
AfiI CCNNNNNNNGG 2 cut(s) 311, 327
AflIII ACRYGT 1 cut(s) 456
AjiI CACGTC 1 cut(s) 392
AjuI GAANNNNNNNTTGG 1 cut(s) 507
AluBI AGCT 2 cut(s) 259, 376
AluI AGCT 2 cut(s) 259, 376
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 1 cut(s) 92
Aor13HI TCCGGA 1 cut(s) 511
ApoI RAATTY 1 cut(s) 269
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 365
AvaII GGWCC 1 cut(s) 365
BccI CCATC 4 cut(s) 22, 32, 305, 496
BcoDI GTCTC 1 cut(s) 447
Bme18I GGWCC 1 cut(s) 365
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 405
BmsI GCATC 2 cut(s) 111, 326
BsaJI CCNNGG 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 327
Bse1I ACTGG 2 cut(s) 13, 163
BseAI TCCGGA 1 cut(s) 511
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 126, 317
BseLI CCNNNNNNNGG 2 cut(s) 311, 327
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 2 cut(s) 13, 163
BsiSI CCGG 2 cut(s) 424, 512
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 311, 327
BsmAI GTCTC 1 cut(s) 447
BsmFI GGGAC 1 cut(s) 91
Bsp13I TCCGGA 1 cut(s) 511
Bsp143I GATC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 247
BspEI TCCGGA 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 405
BspPI GGATC 1 cut(s) 92
BsrI ACTGG 2 cut(s) 13, 163
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 2 cut(s) 126, 317
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 460
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 2 cut(s) 126, 317
Cac8I GCNNGC 1 cut(s) 466
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 365
CviAII CATG 4 cut(s) 61, 117, 289, 457
CviJI RGCY 4 cut(s) 259, 304, 376, 485
CviKI_1 RGCY 4 cut(s) 259, 304, 376, 485
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
DraI TTTAAA 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 4 cut(s) 64, 120, 292, 460
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FaqI GGGAC 1 cut(s) 91
FatI CATG 4 cut(s) 60, 116, 288, 456
FokI GGATG 2 cut(s) 133, 304
FspAI RTGCGCAY 1 cut(s) 125
FspI TGCGCA 1 cut(s) 125
GlaI GCGC 1 cut(s) 125
HapII CCGG 2 cut(s) 424, 512
HhaI GCGC 1 cut(s) 126
Hin1II CATG 4 cut(s) 64, 120, 292, 460
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 3 cut(s) 85, 435, 508
HpaII CCGG 2 cut(s) 424, 512
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 5 cut(s) 68, 93, 142, 256, 322
Hpy188III TCNNGA 2 cut(s) 182, 512
Hpy8I GTNNAC 1 cut(s) 389
Hpy99I CGWCG 1 cut(s) 396
HpyAV CCTTC 3 cut(s) 63, 391, 496
HpyCH4IV ACGT 2 cut(s) 391, 448
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 2 cut(s) 391, 448
Hsp92II CATG 4 cut(s) 64, 120, 292, 460
HspAI GCGC 1 cut(s) 124
Kpn2I TCCGGA 1 cut(s) 511
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 7 cut(s) 26, 176, 243, 313, 381, 437, 525
LweI GCATC 2 cut(s) 111, 326
MaeII ACGT 2 cut(s) 391, 448
MaeIII GTNAC 2 cut(s) 8, 412
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 1 cut(s) 80
MfeI CAATTG 1 cut(s) 306
MluCI AATT 5 cut(s) 269, 306, 351, 429, 532
MlyI GAGTC 1 cut(s) 444
MmeI TCCRAC 2 cut(s) 214, 343
MnlI CCTC 2 cut(s) 111, 418
MroI TCCGGA 1 cut(s) 511
MseI TTAA 1 cut(s) 444
MspI CCGG 2 cut(s) 424, 512
MunI CAATTG 1 cut(s) 306
MwoI GCNNNNNNNGC 1 cut(s) 289
NdeII GATC 1 cut(s) 97
NlaIII CATG 4 cut(s) 64, 120, 292, 460
NlaIV GGNNCC 1 cut(s) 405
NmuCI GTSAC 2 cut(s) 8, 412
NsbI TGCGCA 1 cut(s) 125
NspI RCATGY 1 cut(s) 460
PciI ACATGT 1 cut(s) 456
PfeI GAWTC 2 cut(s) 85, 508
PflMI CCANNNNNTGG 1 cut(s) 311
PleI GAGTC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 443
PscI ACATGT 1 cut(s) 456
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 444
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 1 cut(s) 444
SetI ASST 6 cut(s) 232, 261, 378, 383, 394, 451
SfaNI GCATC 2 cut(s) 111, 326
SinI GGWCC 1 cut(s) 365
Sse9I AATT 5 cut(s) 269, 306, 351, 429, 532
StyI CCWWGG 1 cut(s) 170
TaiI ACGT 2 cut(s) 394, 451
TasI AATT 5 cut(s) 269, 306, 351, 429, 532
TfiI GAWTC 2 cut(s) 85, 508
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TseFI GTSAC 2 cut(s) 8, 412
Tsp45I GTSAC 2 cut(s) 8, 412
TspDTI ATGAA 3 cut(s) 49, 105, 240
Van91I CCANNNNNTGG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.