MD09G1250900.v1.1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000351
Physical Location & Seq
Forward (+)
32170632 .. 32171761
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1250900.v1.1.491

Sequence Viewer

Length: 1041 bp
ATGATGACAGACTCAGCTGATGAGAGCAATGCAAAGGCTGATCACTCCATAATTCAAGTAGAAGAGGAGAGAGAGAGAATTGAGAGAGAAATAAGTCATGTGGGTAACCAAAGTTGGAGCGGAAACAAAGAAAATGAAGACGAATTAATAGCGTCCCGGATAGAAGGAAAGCTTCCCAAGGAATCAACAGAAGAACCAGTTCATACTTGCATCTTTAGAGTCCCTACTAAACATGTCAGGGACAATGAAAATGCTTTTGTCCCACAAGTGGTTTCAATCGGGCCGTATCACCGCGGAAGAGAAAAGCTTCAAGGCATGGAACAAACTAAGCTAAGGTATTTGCTACACCTCCTCAATCGCAAACCAACTCCAGACACCAGTTTGGGAAAGTTTGTCAAAGAAATTAGAAGCAGAGAAGAGTTTCTTCGTAAGTGCTATGAAGAAAAGTCGTATCATCTGAGTAGCTATGAGTTTGTAGAAATGATGGTGGTCGATGGTTGCTTTATTTTAGAACTTCTCCGCAAATCTGTTTCGCCTTTCCCAGGGCGGTTCTCCACATTTAAAAACGACTTGTTGCTGCTTGAAAACCAGCTTCCATGGCAAGTTCTCGACTGTTTATTCAACCTCACAAAAACATCAGAAGAGATTTCTCTATATCAACTTACTTTGGAACTTTCCGAAAACATGCGTTATCCCATTGAGACTGGGACATTGGAAATCAGACATTTACTTGACGCAGTAAGAAATTCGCTTTTTGGATGGGAAAAAAGGGAGTATTACAGAGATTGGAGTCATTGGACTCCTATTCCCTCAGCGACACATCTTGAGGAAATTGGAGTCAAATTTCAACCAGCGTATATGAAATCTCAGTTGGAAATAGGCTTCAACATAGTAAATGGAGTGATGAAAATTCCATATATGATAATTGAAGACAACACAGAATCTCTGTTCAGAAACCTCATAGTCTATGAACAGTGTCAGTTGGTGGGCGACTGTGACACATGTCCCATTTTGTCTTACGCCATGCTAAAGAAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

347

Amino Acids

40.45

Weight (kDa)

5.44

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 71 - 343 2.5e-69 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 120
AccII CGCG 1 cut(s) 294
AciI CCGC 5 cut(s) 120, 292, 294, 520, 547
AcsI RAATTY 3 cut(s) 745, 842, 909
AfiI CCNNNNNNNGG 2 cut(s) 268, 542
AflIII ACRYGT 2 cut(s) 232, 1001
AgsI TTSAA 8 cut(s) 56, 276, 311, 584, 622, 848, 886, 929
AjnI CCWGG 1 cut(s) 541
AjuI GAANNNNNNNTTGG 2 cut(s) 854, 886
AluBI AGCT 6 cut(s) 17, 172, 307, 331, 465, 592
AluI AGCT 6 cut(s) 17, 172, 307, 331, 465, 592
Alw26I GTCTC 1 cut(s) 695
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 577
ApoI RAATTY 3 cut(s) 745, 842, 909
AseI ATTAAT 1 cut(s) 146
Asp700I GAANNNNTTC 3 cut(s) 198, 306, 420
AspS9I GGNCC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 281
BbsI GAAGAC 2 cut(s) 144, 936
BbvCI CCTCAGC 1 cut(s) 811
BbvI GCAGC 1 cut(s) 564
BccI CCATC 3 cut(s) 478, 488, 753
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 543
BclI TGATCA 1 cut(s) 40
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 695
BisI GCNGC 1 cut(s) 578
BlsI GCNGC 1 cut(s) 579
Bme1390I CCNGG 2 cut(s) 157, 543
BmgT120I GGNCC 1 cut(s) 281
BmrFI CCNGG 2 cut(s) 157, 543
BmrI ACTGGG 1 cut(s) 714
BmsI GCATC 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 714
BoxI GACNNNNGTC 1 cut(s) 1002
BpiI GAAGAC 2 cut(s) 144, 936
BpmI CTGGAG 1 cut(s) 354
Bpu10I CCTNAGC 2 cut(s) 332, 811
BpuEI CTTGAG 1 cut(s) 845
BpuMI CCSGG 1 cut(s) 157
BsaJI CCNNGG 5 cut(s) 177, 292, 541, 542, 596
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 542
Bse1I ACTGG 3 cut(s) 197, 378, 709
Bse3DI GCAATG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 5 cut(s) 177, 292, 541, 542, 596
BseGI GGATG 1 cut(s) 764
BseLI CCNNNNNNNGG 2 cut(s) 268, 542
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 4 cut(s) 27, 449, 825, 881
BseNI ACTGG 3 cut(s) 197, 378, 709
BseRI GAGGAG 2 cut(s) 80, 341
BseXI GCAGC 1 cut(s) 564
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 6 cut(s) 139, 206, 245, 254, 721, 990
BslI CCNNNNNNNGG 2 cut(s) 268, 542
BsmAI GTCTC 1 cut(s) 695
BsmFI GGGAC 6 cut(s) 139, 206, 245, 254, 721, 990
BsnI GGCC 1 cut(s) 283
Bsp143I GATC 1 cut(s) 40
Bsp19I CCATGG 1 cut(s) 596
BspACI CCGC 5 cut(s) 120, 292, 294, 520, 547
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 4 cut(s) 26, 450, 824, 880
BspFNI CGCG 1 cut(s) 294
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 3 cut(s) 197, 378, 709
BssECI CCNNGG 5 cut(s) 177, 292, 541, 542, 596
BssMI GATC 1 cut(s) 40
BssT1I CCWWGG 2 cut(s) 177, 596
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 3 cut(s) 614, 975, 995
Bst6I CTCTTC 4 cut(s) 57, 292, 411, 636
BstDEI CTNAG 6 cut(s) 13, 327, 332, 458, 811, 867
BstDSI CCRYGG 2 cut(s) 292, 596
BstEII GGTNACC 1 cut(s) 104
BstENI CCTNNNNNAGG 1 cut(s) 540
BstF5I GGATG 1 cut(s) 764
BstFNI CGCG 1 cut(s) 294
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 695
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 598
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 3 cut(s) 236, 688, 1005
BstPAI GACNNNNGTC 1 cut(s) 1002
BstPI GGTNACC 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 155, 541
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 564
BstV2I GAAGAC 2 cut(s) 144, 936
BsuRI GGCC 1 cut(s) 283
BtgI CCRYGG 2 cut(s) 292, 596
BtsCI GGATG 1 cut(s) 764
BtsIMutI CAGTG 1 cut(s) 980
Cfr13I GGNCC 1 cut(s) 281
Cfr42I CCGCGG 1 cut(s) 295
CseI GACGC 2 cut(s) 141, 743
CviAII CATG 7 cut(s) 98, 233, 316, 597, 685, 1002, 1024
CviJI RGCY 9 cut(s) 17, 38, 172, 283, 307, 331, 465, 592, 882
CviKI_1 RGCY 9 cut(s) 17, 38, 172, 283, 307, 331, 465, 592, 882
DdeI CTNAG 6 cut(s) 13, 327, 332, 458, 811, 867
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
DraI TTTAAA 1 cut(s) 562
Eam1104I CTCTTC 4 cut(s) 57, 292, 411, 636
EarI CTCTTC 4 cut(s) 57, 292, 411, 636
Eco130I CCWWGG 2 cut(s) 177, 596
Eco91I GGTNACC 1 cut(s) 104
EcoNI CCTNNNNNAGG 1 cut(s) 540
EcoO65I GGTNACC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 177, 596
ErhI CCWWGG 2 cut(s) 177, 596
FaeI CATG 7 cut(s) 101, 236, 319, 600, 688, 1005, 1027
FalI AAGNNNNNCTT 4 cut(s) 156, 188, 408, 440
FaqI GGGAC 6 cut(s) 139, 206, 245, 254, 721, 990
FatI CATG 7 cut(s) 97, 232, 315, 596, 684, 1001, 1023
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 578
FokI GGATG 1 cut(s) 771
Fsp4HI GCNGC 1 cut(s) 578
GluI GCNGC 1 cut(s) 578
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 157
HgaI GACGC 2 cut(s) 141, 743
Hin1II CATG 7 cut(s) 101, 236, 319, 600, 688, 1005, 1027
HindIII AAGCTT 2 cut(s) 170, 305
HinfI GANTC 7 cut(s) 11, 182, 219, 790, 799, 837, 941
HpaII CCGG 1 cut(s) 157
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 5 cut(s) 459, 640, 679, 722, 953
Hpy188III TCNNGA 3 cut(s) 371, 608, 824
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 3 cut(s) 614, 975, 995
HpyCH4V TGCA 2 cut(s) 32, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 598
HpyF3I CTNAG 6 cut(s) 13, 327, 332, 458, 811, 867
Hsp92II CATG 7 cut(s) 101, 236, 319, 600, 688, 1005, 1027
Ksp22I TGATCA 1 cut(s) 40
KspI CCGCGG 1 cut(s) 295
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 117
Lsp1109I GCAGC 1 cut(s) 564
LweI GCATC 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 104, 995
MalI GATC 1 cut(s) 42
MbiI CCGCTC 1 cut(s) 120
MboI GATC 1 cut(s) 40
MboII GAAGA 9 cut(s) 74, 149, 203, 309, 416, 428, 452, 653, 941
MlyI GAGTC 5 cut(s) 5, 228, 793, 799, 846
MmeI TCCRAC 2 cut(s) 95, 852
MnlI CCTC 7 cut(s) 58, 359, 362, 635, 820, 820, 968
MroXI GAANNNNTTC 3 cut(s) 198, 306, 420
MseI TTAA 2 cut(s) 146, 561
MspA1I CMGCKG 2 cut(s) 17, 294
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 2 cut(s) 157, 543
MvaI CCWGG 1 cut(s) 543
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 598
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 596
NdeII GATC 1 cut(s) 40
NlaIII CATG 7 cut(s) 101, 236, 319, 600, 688, 1005, 1027
NmuCI GTSAC 1 cut(s) 995
NspI RCATGY 3 cut(s) 236, 688, 1005
PasI CCCWGGG 1 cut(s) 542
PciI ACATGT 2 cut(s) 232, 1001
PdmI GAANNNNTTC 3 cut(s) 198, 306, 420
PfeI GAWTC 2 cut(s) 182, 941
PfoI TCCNGGA 1 cut(s) 155
PkrI GCNGC 1 cut(s) 579
PleI GAGTC 5 cut(s) 5, 227, 793, 798, 845
PpsI GAGTC 5 cut(s) 5, 227, 793, 798, 845
PscI ACATGT 2 cut(s) 232, 1001
PshAI GACNNNNGTC 1 cut(s) 1002
PshBI ATTAAT 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 541
PspEI GGTNACC 1 cut(s) 104
PspGI CCWGG 1 cut(s) 541
PspPI GGNCC 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 17
SacII CCGCGG 1 cut(s) 295
SaqAI TTAA 2 cut(s) 146, 561
SatI GCNGC 1 cut(s) 578
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 5 cut(s) 5, 228, 793, 799, 846
ScrFI CCNGG 2 cut(s) 157, 543
SfaNI GCATC 1 cut(s) 219
Sfr303I CCGCGG 1 cut(s) 295
SgrBI CCGCGG 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
SsiI CCGC 5 cut(s) 120, 292, 294, 520, 547
StyD4I CCNGG 2 cut(s) 155, 541
StyI CCWWGG 2 cut(s) 177, 596
TaaI ACNGT 3 cut(s) 614, 975, 995
TaqI TCGA 2 cut(s) 492, 609
TfiI GAWTC 2 cut(s) 182, 941
Tru1I TTAA 2 cut(s) 146, 561
Tru9I TTAA 2 cut(s) 146, 561
TscAI CASTG 1 cut(s) 980
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 1 cut(s) 577
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 7 cut(s) 150, 191, 261, 453, 875, 920, 984
TspRI CASTG 1 cut(s) 980
VspI ATTAAT 1 cut(s) 146
XagI CCTNNNNNAGG 1 cut(s) 540
XapI RAATTY 3 cut(s) 745, 842, 909
XceI RCATGY 3 cut(s) 236, 688, 1005
XmnI GAANNNNTTC 3 cut(s) 198, 306, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.